Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028385 Camellia sinensis var. sinensis HOM05D006077 ORTHO05D007499 2.6e-33 144.8 73 100.0
CSS0011852 Camellia sinensis var. sinensis HOM05D006077 ORTHO05D007499 1.1e-20 102.8 54 96.3
Actinidia26028 Actinidia chinensis HOM05D006077 ORTHO05D007499 4.2e-20 100.9 54 94.4
Dinv37869 Davidia involucrata HOM05D006077 ORTHO05D007499 5.5e-20 100.5 54 94.4
TAR636G2213 Trochodendron aralioides HOM05D006077 ORTHO05D007499 5.5e-20 100.5 54 92.6
Glyma.16G007300 Glycine max HOM05D006077 ORTHO05D007499 1.2e-19 99.4 54 90.7
Gohir.D04G009800 Gossypium hirsutum HOM05D006077 ORTHO05D007499 2.1e-19 98.6 54 90.7
Gorai.012G011600 Gossypium raimondii HOM05D006077 ORTHO05D007499 2.1e-19 98.6 54 90.7
PSO421G0038 Papaver somniferum HOM05D006077 ORTHO05D007499 2.8e-19 98.2 54 88.9
GSVIVG01016766001 Vitis vinifera HOM05D006077 ORTHO05D007499 2.8e-19 98.2 54 90.7
Aqoxy7G01092 Aquilegia oxysepala HOM05D006077 ORTHO05D007499 4.7e-19 97.4 54 88.9
Phvul.010G130300 Phaseolus vulgaris HOM05D006077 ORTHO05D007499 4.7e-19 97.4 54 87.0
arahy.Tifrunner.gnm1.ann1.G5XP6S Arachis hypogaea HOM05D006077 ORTHO05D007499 6.1e-19 97.1 54 88.9
arahy.Tifrunner.gnm1.ann1.G7AU8E Arachis hypogaea HOM05D006077 ORTHO05D007499 6.1e-19 97.1 54 88.9
Lalb_Chr01g0013591 Lupinus albus HOM05D006077 ORTHO05D007499 6.1e-19 97.1 54 88.9
Nn4g24846 Nelumbo nucifera HOM05D006077 ORTHO05D007499 6.1e-19 97.1 54 88.9
Sc15g0000510 Simmondsia chinensis HOM05D006077 ORTHO05D007499 6.1e-19 97.1 54 87.0
vmacro15032 Vaccinium macrocarpon HOM05D006077 ORTHO05D007499 6.1e-19 97.1 54 90.7
FAN02G4125 Fragaria x ananassa HOM05D006077 ORTHO05D007499 8.0e-19 96.7 60 78.3
Glyma.07G038100 Glycine max HOM05D006077 ORTHO05D007499 8.0e-19 96.7 54 88.9
VMungo0331G1077 Vigna mungo HOM05D006077 ORTHO05D007499 1.0e-18 96.3 54 87.0
Haze_16030 Corylus avellana HOM05D006077 ORTHO05D007499 1.4e-18 95.9 54 88.9
Gohir.A05G405800 Gossypium hirsutum HOM05D006077 ORTHO05D007499 1.4e-18 95.9 54 87.0
Psat4g182400 Pisum sativum HOM05D006077 ORTHO05D007499 1.4e-18 95.9 54 87.0
Thecc.06G119600 Theobroma cacao HOM05D006077 ORTHO05D007499 1.4e-18 95.9 54 87.0
ATR0598G320 Amborella trichopoda HOM05D006077 ORTHO05D007499 1.8e-18 95.5 54 87.0
Duzib235G0120 Durio zibethinus HOM05D006077 ORTHO05D007499 1.8e-18 95.5 54 87.0
ECA232G1087 Erigeron canadensis HOM05D006077 ORTHO05D007499 1.8e-18 95.5 53 86.8
Lj3g0010947 Lotus japonicus HOM05D006077 ORTHO05D007499 1.8e-18 95.5 54 87.0
Lsat_1_v5_gn_4_92920 Lactuca sativa HOM05D006077 ORTHO05D007499 2.3e-18 95.1 54 87.0
TPR.G32491 Trifolium pratense HOM05D006077 ORTHO05D007499 2.3e-18 95.1 54 85.2
EL10Ac7g16407 Beta vulgaris HOM05D006077 ORTHO05D007499 3.0e-18 94.7 54 83.3
CiPaw.01G218900 Carya illinoinensis HOM05D006077 ORTHO05D007499 3.0e-18 94.7 52 90.4
PSO063G4040 Papaver somniferum HOM05D006077 ORTHO05D007499 3.0e-18 94.7 54 87.0
TWI79G1574 Tripterygium wilfordii HOM05D006077 ORTHO05D007499 4.0e-18 94.4 54 87.0
COL.COLO4_30761 Corchorus olitorius HOM05D006077 ORTHO05D007499 6.8e-18 93.6 54 85.2
Duzib192G0164 Durio zibethinus HOM05D006077 ORTHO05D007499 6.8e-18 93.6 54 85.2
Rhsim08G0238900 Rhododendron simsii HOM05D006077 ORTHO05D007499 6.8e-18 93.6 54 87.0
TWI75G1673 Tripterygium wilfordii HOM05D006077 ORTHO05D007499 6.8e-18 93.6 54 85.2
FvH4_6g34660 Fragaria vesca HOM05D006077 ORTHO05D007499 8.9e-18 93.2 53 83.0
FAN14G4463 Fragaria x ananassa HOM05D006077 ORTHO05D007499 8.9e-18 93.2 53 83.0
RcHm_v2.0_Chr2g0145211 Rosa chinensis HOM05D006077 ORTHO05D007499 1.2e-17 92.8 52 84.6
Ah.08g216780 Amaranthus hybridus HOM05D006077 ORTHO05D007499 1.5e-17 92.4 54 81.5
CiPaw.02G136000 Carya illinoinensis HOM05D006077 ORTHO05D007499 2.0e-17 92.0 52 86.5
CDE11G1182 Ceratophyllum demersum HOM05D006077 ORTHO05D007499 2.0e-17 92.0 51 86.3
Eucgr.F03177 Eucalyptus grandis HOM05D006077 ORTHO05D007499 2.0e-17 92.0 54 83.3
Prupe.3G042200 Prunus persica HOM05D006077 ORTHO05D007499 2.0e-17 92.0 51 88.2
Hund05739 Selenicereus undatus HOM05D006077 ORTHO05D007499 2.0e-17 92.0 54 83.3
THA.LOC104822655 Tarenaya hassleriana HOM05D006077 ORTHO05D007499 4.4e-17 90.9 54 83.3
CANSAT25G1718 Cannabis sativa HOM05D006077 ORTHO05D007499 5.7e-17 90.5 51 84.3
CANSAT64G0122 Cannabis sativa HOM05D006077 ORTHO05D007499 5.7e-17 90.5 51 84.3
CANSAT64G2602 Cannabis sativa HOM05D006077 ORTHO05D007499 5.7e-17 90.5 51 84.3
FAN09G3570 Fragaria x ananassa HOM05D006077 ORTHO05D007499 5.7e-17 90.5 53 83.0
BcaB07g33246 Brassica carinata HOM05D006077 ORTHO05D007499 1.3e-16 89.4 54 81.5
Carub.0001s4344 Capsella rubella HOM05D006077 ORTHO05D007499 1.3e-16 89.4 54 81.5
CDE05G1235 Ceratophyllum demersum HOM05D006077 ORTHO05D007499 1.3e-16 89.4 55 81.8
Thhalv10011896m.g Eutrema salsugineum HOM05D006077 ORTHO05D007499 1.3e-16 89.4 54 81.5
Hma1.2p1_0291F.1_g115130 Hydrangea macrophylla HOM05D006077 ORTHO05D007499 1.3e-16 89.4 55 83.6
CARHR044580 Cardamine hirsuta HOM05D006077 ORTHO05D007499 1.7e-16 89.0 54 81.5
Migut.D00939 Erythranthe guttata HOM05D006077 ORTHO05D007499 1.7e-16 89.0 54 87.0
BcaB06g25414 Brassica carinata HOM05D006077 ORTHO05D007499 2.2e-16 88.6 54 79.6
MD09G1183900 Malus domestica HOM05D006077 ORTHO05D007499 2.2e-16 88.6 52 80.8
Peaxi162Scf00177g00511 Petunia axillaris HOM05D006077 ORTHO05D007499 2.8e-16 88.2 54 85.2
BcaC05g29136 Brassica carinata HOM05D006077 ORTHO05D007499 3.7e-16 87.8 54 79.6
C05p53730 Brassica napus HOM05D006077 ORTHO05D007499 3.7e-16 87.8 54 79.6
Oeu015484.1 Olea europaea HOM05D006077 ORTHO05D007499 3.7e-16 87.8 54 85.2
Manes.11G020500 Manihot esculenta HOM05D006077 ORTHO05D007499 6.3e-16 87.0 53 81.1
Solyc12g049310.2 Solanum lycopersicum HOM05D006077 ORTHO05D007499 6.3e-16 87.0 46 91.3
Sopen12g023790 Solanum pennellii HOM05D006077 ORTHO05D007499 6.3e-16 87.0 46 91.3
Sp3g12220 Schrenkiella parvula HOM05D006077 ORTHO05D007499 1.1e-15 86.3 54 75.9
AL3G26170 Arabidopsis lyrata HOM05D006077 ORTHO05D007499 2.4e-15 85.1 54 75.9
AT1G54210 Arabidopsis thaliana HOM05D006077 ORTHO05D007499 2.4e-15 85.1 52 80.8
CAN.G1368.2 Capsicum annuum HOM05D006077 ORTHO05D007499 2.4e-15 85.1 46 89.1
CARHR088790 Cardamine hirsuta HOM05D006077 ORTHO05D007499 2.4e-15 85.1 54 74.1
RcHm_v2.0_Chr5g0053491 Rosa chinensis HOM05D006077 ORTHO05D007499 2.4e-15 85.1 52 80.8
AT3G13970 Arabidopsis thaliana HOM05D006077 ORTHO05D007499 3.2e-15 84.7 55 70.9
unitig_699.g19648 Utricularia gibba HOM05D002868 ORTHO05D003477 3.2e-15 84.7 54 81.5
BolC5t34043H Brassica oleracea HOM05D006077 ORTHO05D007499 4.1e-15 84.3 52 78.8
Cc00_g21000 Coffea canephora HOM05D006077 ORTHO05D007499 9.2e-15 83.2 54 81.5
Medtr8g020500 Medicago truncatula HOM05D006077 ORTHO05D007499 1.2e-14 82.8 43 93.0
AL1G62920 Arabidopsis lyrata HOM05D006077 ORTHO05D007499 2.0e-14 82.0 54 75.9
SalBow6G4082 Salvia bowleyana HOM05D006077 ORTHO05D007499 2.0e-14 82.0 54 79.6
SalBow6G4389 Salvia bowleyana HOM05D006077 ORTHO05D007499 2.0e-14 82.0 54 79.6
Carub.0003s1355 Capsella rubella HOM05D006077 ORTHO05D007499 2.7e-14 81.6 51 74.5
Ciclev10026605m.g Citrus clementina HOM05D006077 ORTHO05D007499 2.7e-14 81.6 53 77.4
Hma1.2p1_0496F.1_g166240 Hydrangea macrophylla HOM05D006077 ORTHO05D007499 2.7e-14 81.6 43 93.0
Potri.003G064300 Populus trichocarpa HOM05D006077 ORTHO05D007499 4.6e-14 80.9 54 75.9
Sabra03G0038000 Salix brachista HOM05D006077 ORTHO05D007499 5.9e-14 80.5 54 74.1
SalBow6G7202 Salvia bowleyana HOM05D006077 ORTHO05D007499 5.9e-14 80.5 45 88.9
Pp3c4_29920 Physcomitrium patens HOM05D006077 ORTHO05D007499 7.8e-14 80.1 55 74.5
Potri.001G169700 Populus trichocarpa HOM05D006077 ORTHO05D007499 1.0e-13 79.7 54 70.4
A05p35440 Brassica napus HOM05D006077 ORTHO05D007499 1.7e-13 79.0 54 72.2
RcHm_v2.0_Chr3g0490611 Rosa chinensis HOM05D006077 ORTHO05D007499 1.7e-13 79.0 52 73.1
Sed0008411 Sechium edule HOM05D006077 ORTHO05D007499 1.7e-13 79.0 53 71.7
A06p00460 Brassica napus HOM05D006077 ORTHO05D007499 2.3e-13 78.6 60 70.0
AUR62009882 Chenopodium quinoa HOM05D006077 ORTHO05D007499 6.6e-13 77.0 44 77.3
HPP92_019155 Vanilla planifolia HOM05D006077 ORTHO05D007499 8.6e-13 76.6 54 72.2
BolC6t36071H Brassica oleracea HOM05D006077 ORTHO05D007499 1.5e-12 75.9 52 75.0
BraA06t23260Z Brassica rapa HOM05D006077 ORTHO05D007499 1.5e-12 75.9 52 75.0
ClCG07G014030 Citrullus lanatus HOM05D006077 ORTHO05D007499 1.5e-12 75.9 53 69.8
CsaV3_3G043520 Cucumis sativus L. HOM05D006077 ORTHO05D007499 1.5e-12 75.9 53 69.8
BcaB07g33245 Brassica carinata HOM05D006077 ORTHO05D007499 3.3e-12 74.7 43 83.7
BcaC08g43600 Brassica carinata HOM05D006077 ORTHO05D007499 3.3e-12 74.7 43 83.7
C06p09980 Brassica napus HOM05D006077 ORTHO05D007499 3.3e-12 74.7 43 83.7
MELO3C025809.2 Cucumis melo HOM05D006077 ORTHO05D007499 3.3e-12 74.7 53 67.9
Zm00001eb256700 Zea mays HOM05D006077 ORTHO05D007499 3.3e-12 74.7 54 68.5
FAN05G2137 Fragaria x ananassa HOM05D006077 ORTHO05D007499 4.3e-12 74.3 79 54.4
Mapoly0025s0134 Marchantia polymorpha HOM05D006077 ORTHO05D007499 4.3e-12 74.3 48 77.1
BraA05t22354Z Brassica rapa HOM05D006077 ORTHO05D007499 7.3e-12 73.6 43 83.7
Aa31LG8G1170 Aethionema arabicum HOM05D006077 ORTHO05D007499 9.5e-12 73.2 62 61.3
AagrBONN_evm.TU.Sc2ySwM_228.485 Anthoceros agrestis HOM05D006077 ORTHO05D007499 1.0e-10 69.7 44 75.0
CBR_g34185 Chara braunii HOM05D000019 ORTHO05D001702 4.0e-10 67.8 52 65.4
Os06g0205000 Oryza sativa ssp. japonica HOM05D006077 ORTHO05D007499 5.2e-10 67.4 45 64.4
Sed0025034 Sechium edule HOM05D006077 ORTHO05D007499 5.2e-10 67.4 53 64.2
Manes.04G144301 Manihot esculenta HOM05D006077 ORTHO05D007499 5.8e-09 63.9 42 76.2
SGA_v2.0_scaffold4G02063 Striga asiatica HOM05D006077 ORTHO05D007499 1.1e-07 59.7 31 90.3
FAN24G1797 Fragaria x ananassa HOM05D006077 ORTHO05D007499 1.9e-07 58.9 36 75.0
PRCOL_00003774 Prasinoderma coloniale HOM05D006077 ORTHO05D007499 2.0e-06 55.5 44 56.8
MCO16G375 Micromonas commoda HOM05D006077 ORTHO05D007499 3.5e-06 54.7 39 69.2


User provided reference genes

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