Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027306 Camellia sinensis var. sinensis HOM05D000904 ORTHO05D005281 3.9e-54 214.5 109 100.0
Dinv29675 Davidia involucrata HOM05D000904 ORTHO05D005281 4.4e-37 157.9 89 87.6
CSS0036471 Camellia sinensis var. sinensis HOM05D000904 ORTHO05D005281 5.7e-37 157.5 89 87.6
Actinidia26192 Actinidia chinensis HOM05D000904 ORTHO05D005281 1.7e-36 156.0 89 85.4
Rhsim05G0115900 Rhododendron simsii HOM05D000904 ORTHO05D005281 2.8e-36 155.2 89 85.4
Actinidia01632 Actinidia chinensis HOM05D000904 ORTHO05D005281 1.1e-35 153.3 89 83.1
Lj5A282G72 Lonicera japonica HOM05D000904 ORTHO05D005281 4.1e-35 151.4 89 82.0
Nn5g27347 Nelumbo nucifera HOM05D000904 ORTHO05D005281 5.3e-35 151.0 89 82.0
ECA248G0469 Erigeron canadensis HOM05D000904 ORTHO05D005281 7.0e-35 150.6 89 80.9
Oeu043613.1 Olea europaea HOM05D000904 ORTHO05D005281 7.0e-35 150.6 89 83.1
Dinv29676 Davidia involucrata HOM05D000904 ORTHO05D005281 9.1e-35 150.2 106 74.5
HanXRQChr12g0381691 Helianthus annuus HOM05D000904 ORTHO05D005281 3.5e-34 148.3 89 79.8
Hma1.2p1_0052F.1_g029960 Hydrangea macrophylla HOM05D000904 ORTHO05D005281 5.9e-34 147.5 88 80.7
GSVIVG01023151001 Vitis vinifera HOM05D000904 ORTHO05D005281 7.7e-34 147.1 89 79.8
CANSAT56G0278 Cannabis sativa HOM05D000904 ORTHO05D005281 1.7e-33 146.0 91 79.1
Cc02_g23520 Coffea canephora HOM05D000904 ORTHO05D005281 1.7e-33 146.0 89 79.8
Lsat_1_v5_gn_9_121801 Lactuca sativa HOM05D000904 ORTHO05D005281 1.7e-33 146.0 89 77.5
CDE02G4514 Ceratophyllum demersum HOM05D000904 ORTHO05D005281 5.0e-33 144.4 89 75.3
MBI06_g32155_MAGBIO Magnolia biondii HOM05D000904 ORTHO05D005281 6.5e-33 144.1 89 76.4
CiPaw.05G002000 Carya illinoinensis HOM05D000904 ORTHO05D005281 1.1e-32 143.3 91 78.0
Peaxi162Scf00011g01843 Petunia axillaris HOM05D006686 ORTHO05D008463 1.1e-32 143.3 89 76.4
ClCG11G000390 Citrullus lanatus HOM05D000904 ORTHO05D005281 1.9e-32 142.5 91 74.7
CsaV3_5G013960 Cucumis sativus L. HOM05D000904 ORTHO05D005281 1.9e-32 142.5 89 76.4
TAR381G0334 Trochodendron aralioides HOM05D000904 ORTHO05D005281 1.9e-32 142.5 89 75.3
Atru.chr6.331 Acer truncatum HOM05D000904 ORTHO05D005281 2.5e-32 142.1 91 76.9
SGA_v2.0_scaffold165G38271 Striga asiatica HOM05D000904 ORTHO05D005281 2.5e-32 142.1 89 76.4
Zm00001eb243890 Zea mays HOM05D000904 ORTHO05D005281 2.5e-32 142.1 89 75.3
MELO3C026450.2 Cucumis melo HOM05D000904 ORTHO05D005281 3.2e-32 141.7 91 74.7
Nitab4.5_0001057g0010 Nicotiana tabacum HOM05D000904 ORTHO05D005281 3.2e-32 141.7 89 75.3
Os02g0557700 Oryza sativa ssp. japonica HOM05D000904 ORTHO05D005281 5.5e-32 141.0 89 74.2
Sopen01g045520 Solanum pennellii HOM05D000904 ORTHO05D005281 5.5e-32 141.0 89 75.3
PGSC0003DMG401024871 Solanum tuberosum HOM05D000904 ORTHO05D005281 7.2e-32 140.6 89 75.3
Cfa004449 Carpinus fangiana HOM05D000904 ORTHO05D005281 9.4e-32 140.2 91 74.7
Sed0012472 Sechium edule HOM05D000904 ORTHO05D005281 9.4e-32 140.2 91 73.6
Lj4g0025399 Lotus japonicus HOM05D000904 ORTHO05D005281 1.2e-31 139.8 91 73.6
Potri.004G228533 Populus trichocarpa HOM05D000904 ORTHO05D005281 1.2e-31 139.8 91 74.7
Sabra01G0173500 Salix brachista HOM05D000904 ORTHO05D005281 1.2e-31 139.8 91 74.7
Aqoxy5G01864 Aquilegia oxysepala HOM05D000904 ORTHO05D005281 1.6e-31 139.4 89 70.8
HPP92_024399 Vanilla planifolia HOM05D000904 ORTHO05D005281 1.6e-31 139.4 89 71.9
Eucgr.I02794 Eucalyptus grandis HOM05D000904 ORTHO05D005281 2.1e-31 139.0 91 72.5
Solyc01g103100.3 Solanum lycopersicum HOM05D000904 ORTHO05D005281 2.7e-31 138.7 89 74.2
TWI14G0421 Tripterygium wilfordii HOM05D000904 ORTHO05D005281 2.7e-31 138.7 91 73.6
CAN.G855.46 Capsicum annuum HOM05D000904 ORTHO05D005281 3.6e-31 138.3 89 73.0
AUR62034943 Chenopodium quinoa HOM05D000904 ORTHO05D005281 3.6e-31 138.3 89 75.3
Medtr4g134660 Medicago truncatula HOM05D000904 ORTHO05D005281 4.7e-31 137.9 93 73.1
Migut.B00726 Erythranthe guttata HOM05D000904 ORTHO05D005281 8.0e-31 137.1 89 74.2
THA.LOC104810194 Tarenaya hassleriana HOM05D000904 ORTHO05D005281 8.0e-31 137.1 89 71.9
THA.LOC104821580 Tarenaya hassleriana HOM05D000904 ORTHO05D005281 8.0e-31 137.1 89 71.9
TPR.G5962 Trifolium pratense HOM05D000904 ORTHO05D005281 8.0e-31 137.1 94 70.2
MSTRG.16471 Avicennia marina HOM05D000904 ORTHO05D005281 1.0e-30 136.7 89 71.9
arahy.Tifrunner.gnm1.ann1.87EYQC Arachis hypogaea HOM05D000904 ORTHO05D005281 1.4e-30 136.3 92 75.0
arahy.Tifrunner.gnm1.ann1.R3DQKX Arachis hypogaea HOM05D000904 ORTHO05D005281 1.4e-30 136.3 92 75.0
Ciclev10002114m.g Citrus clementina HOM05D000904 ORTHO05D005281 1.4e-30 136.3 91 73.6
Lalb_Chr07g0176801 Lupinus albus HOM05D000904 ORTHO05D005281 1.4e-30 136.3 94 71.3
Sc03g0004970 Simmondsia chinensis HOM05D000904 ORTHO05D005281 1.4e-30 136.3 89 73.0
Manes.07G028700 Manihot esculenta HOM05D000904 ORTHO05D005281 1.8e-30 136.0 89 71.9
ATR1089G061 Amborella trichopoda HOM05D000904 ORTHO05D005281 2.3e-30 135.6 89 70.8
EL10Ac5g12512 Beta vulgaris HOM05D000904 ORTHO05D005281 2.3e-30 135.6 89 71.9
Cpa.g.sc192.24 Carica papaya HOM05D000904 ORTHO05D005281 2.3e-30 135.6 91 70.3
Psat4g001040 Pisum sativum HOM05D000904 ORTHO05D005281 2.3e-30 135.6 91 71.4
Zm00001eb378920 Zea mays HOM05D000904 ORTHO05D005281 2.3e-30 135.6 91 71.4
AUR62022331 Chenopodium quinoa HOM05D000904 ORTHO05D005281 3.0e-30 135.2 89 73.0
Hund15393 Selenicereus undatus HOM05D000904 ORTHO05D005281 3.0e-30 135.2 101 64.4
SEGI_40058 Sequoiadendron giganteum HOM05D000904 ORTHO05D005281 3.0e-30 135.2 92 66.3
BcaNung05165 Brassica carinata HOM05D000904 ORTHO05D005281 4.0e-30 134.8 89 68.5
BcaNung05227 Brassica carinata HOM05D000904 ORTHO05D005281 4.0e-30 134.8 89 68.5
A08p34030 Brassica napus HOM05D000904 ORTHO05D006931 4.0e-30 134.8 89 68.5
C08p13580 Brassica napus HOM05D000904 ORTHO05D006931 4.0e-30 134.8 89 68.5
BolC8t48998H Brassica oleracea HOM05D000904 ORTHO05D005281 4.0e-30 134.8 89 68.5
BraA08t35316Z Brassica rapa HOM05D000904 ORTHO05D005281 4.0e-30 134.8 89 68.5
Ca_13531_v3 Cicer arietinum L. HOM05D000904 ORTHO05D005281 4.0e-30 134.8 99 66.7
Eucgr.I02792 Eucalyptus grandis HOM05D000904 ORTHO05D005281 5.2e-30 134.4 89 71.9
Aa31LG1G4630 Aethionema arabicum HOM05D000904 ORTHO05D005281 6.8e-30 134.0 89 67.4
AL1G21040 Arabidopsis lyrata HOM05D000904 ORTHO05D005281 6.8e-30 134.0 89 67.4
AT1G10310 Arabidopsis thaliana HOM05D000904 ORTHO05D005281 6.8e-30 134.0 89 67.4
Sp1g08910 Schrenkiella parvula HOM05D000904 ORTHO05D005281 6.8e-30 134.0 89 67.4
Ah.14g085600 Amaranthus hybridus HOM05D000904 ORTHO05D005281 8.8e-30 133.7 89 70.8
Medtr4g066050 Medicago truncatula HOM05D000904 ORTHO05D005281 8.8e-30 133.7 93 68.8
PSO210G7568 Papaver somniferum HOM05D000904 ORTHO05D005281 8.8e-30 133.7 89 68.5
PSO447G0087 Papaver somniferum HOM05D000904 ORTHO05D005281 8.8e-30 133.7 89 68.5
Ah.09g231850 Amaranthus hybridus HOM05D000904 ORTHO05D005281 1.2e-29 133.3 89 69.7
COL.COLO4_22860 Corchorus olitorius HOM05D000904 ORTHO05D005281 1.2e-29 133.3 91 69.2
Thhalv10008625m.g Eutrema salsugineum HOM05D000904 ORTHO05D005281 1.2e-29 133.3 89 67.4
unitig_37.g12401 Utricularia gibba HOM05D000904 ORTHO05D005281 1.2e-29 133.3 90 73.3
Eucgr.I02793 Eucalyptus grandis HOM05D000904 ORTHO05D005281 1.5e-29 132.9 89 68.5
vmacro19833 Vaccinium macrocarpon HOM05D000904 ORTHO05D005281 1.5e-29 132.9 130 55.4
Duzib192G0673 Durio zibethinus HOM05D000904 ORTHO05D005281 2.0e-29 132.5 91 68.1
Carub.0001s0972 Capsella rubella HOM05D000904 ORTHO05D005281 2.6e-29 132.1 89 66.3
SEGI_19846 Sequoiadendron giganteum HOM05D000904 ORTHO05D005281 2.6e-29 132.1 89 66.3
CARHR010440 Cardamine hirsuta HOM05D000904 ORTHO05D005281 4.4e-29 131.3 89 66.3
PSO210G6890 Papaver somniferum HOM05D000904 ORTHO05D005281 4.4e-29 131.3 89 67.4
VMungo1215G2691 Vigna mungo HOM05D000904 ORTHO05D005281 4.4e-29 131.3 93 67.7
Migut.B00727 Erythranthe guttata HOM05D000904 ORTHO05D005281 5.7e-29 131.0 89 69.7
SMO196G0063 Selaginella moellendorffii HOM05D000904 ORTHO05D005281 5.7e-29 131.0 88 70.5
Phvul.003G075700 Phaseolus vulgaris HOM05D000904 ORTHO05D005281 7.5e-29 130.6 93 68.8
Thecc.06G016900 Theobroma cacao HOM05D000904 ORTHO05D005281 7.5e-29 130.6 89 67.4
Gohir.A10G003300 Gossypium hirsutum HOM05D000904 ORTHO05D005281 2.8e-28 128.6 91 65.9
Gohir.D10G003300 Gossypium hirsutum HOM05D000904 ORTHO05D005281 2.8e-28 128.6 91 65.9
Gorai.011G003700 Gossypium raimondii HOM05D000904 ORTHO05D005281 2.8e-28 128.6 91 65.9
Sp6g10930 Schrenkiella parvula HOM05D000904 ORTHO05D005281 6.3e-28 127.5 89 64.0
Glyma.03G006500 Glycine max HOM05D000904 ORTHO05D005281 1.2e-26 123.2 93 63.4
DCAR_031994 Daucus carota HOM05D000904 ORTHO05D005281 2.0e-26 122.5 81 71.6
Prupe.1G584900 Prunus persica HOM05D000904 ORTHO05D005281 2.3e-25 119.0 95 65.3
FAN04G1787 Fragaria x ananassa HOM05D000904 ORTHO05D005281 2.9e-25 118.6 94 66.0
FvH4_5g27970 Fragaria vesca HOM05D000904 ORTHO05D005281 3.8e-25 118.2 94 66.0
FAN18G2944 Fragaria x ananassa HOM05D000904 ORTHO05D005281 3.8e-25 118.2 94 66.0
MELO3C034313.2 Cucumis melo HOM05D000904 ORTHO05D005281 8.6e-25 117.1 93 63.4
RcHm_v2.0_Chr7g0220131 Rosa chinensis HOM05D000904 ORTHO05D005281 1.1e-24 116.7 94 64.9
MD08G1247500 Malus domestica HOM05D000904 ORTHO05D005281 2.5e-24 115.5 95 62.1
Medtr4g070490 Medicago truncatula HOM05D000904 ORTHO05D005281 3.3e-24 115.2 95 58.9
ClCG11G000350 Citrullus lanatus HOM05D000904 ORTHO05D005281 8.0e-23 110.5 91 60.4
CsaV3_5G013950 Cucumis sativus L. HOM05D000904 ORTHO05D005281 1.4e-22 109.8 89 60.7
ClCG11G000320 Citrullus lanatus HOM05D000904 ORTHO05D005281 6.8e-22 107.5 91 56.0
Sed0015061 Sechium edule HOM05D000904 ORTHO05D005281 2.0e-21 105.9 91 53.8
CsaV3_5G013930 Cucumis sativus L. HOM05D000904 ORTHO05D005281 3.4e-21 105.1 89 56.2
Sed0015991 Sechium edule HOM05D000904 ORTHO05D005281 1.3e-20 103.2 89 55.1
CsaV3_1G039120 Cucumis sativus L. HOM05D000904 ORTHO05D005281 2.2e-20 102.4 91 60.4
Sed0005829 Sechium edule HOM05D000904 ORTHO05D005281 2.2e-20 102.4 91 53.8
MELO3C026455.2 Cucumis melo HOM05D000904 ORTHO05D005281 2.8e-20 102.1 89 53.9
CsaV3_5G014070 Cucumis sativus L. HOM05D000904 ORTHO05D005281 2.8e-20 102.1 91 53.8
CsaV3_5G015540 Cucumis sativus L. HOM05D000904 ORTHO05D005281 4.9e-20 101.3 92 53.3
ClCG11G000250 Citrullus lanatus HOM05D000904 ORTHO05D005281 8.3e-20 100.5 89 53.9
Sed0023226 Sechium edule HOM05D000904 ORTHO05D005281 8.3e-20 100.5 91 50.5
ClCG11G000420 Citrullus lanatus HOM05D000904 ORTHO05D005281 1.1e-19 100.1 90 54.4
MELO3C022941.2 Cucumis melo HOM05D000904 ORTHO05D005281 1.2e-18 96.7 93 52.7
Sed0008301 Sechium edule HOM05D000904 ORTHO05D005281 1.6e-18 96.3 89 53.9
ClCG11G000340 Citrullus lanatus HOM05D000904 ORTHO05D005281 2.7e-18 95.5 85 51.8
ClCG11G000610 Citrullus lanatus HOM05D000904 ORTHO05D005281 2.7e-18 95.5 80 57.5
CsaV3_5G015620 Cucumis sativus L. HOM05D000904 ORTHO05D005281 3.5e-18 95.1 89 52.8
ClCG11G000220 Citrullus lanatus HOM05D004159 ORTHO05D005858 5.9e-18 94.4 91 53.8
MELO3C027175.2 Cucumis melo HOM05D000904 ORTHO05D005281 1.0e-17 93.6 89 47.2
MELO3C015337.2 Cucumis melo HOM05D000904 ORTHO05D005281 1.3e-17 93.2 77 61.0
Medtr4g070500 Medicago truncatula HOM05D000904 ORTHO05D005281 1.3e-17 93.2 91 51.6
CsaV3_1G039110 Cucumis sativus L. HOM05D000904 ORTHO05D005281 1.7e-17 92.8 93 54.8
CsaV3_5G015290 Cucumis sativus L. HOM05D000904 ORTHO05D005281 2.3e-17 92.4 89 47.2
RcHm_v2.0_Chr7g0220301 Rosa chinensis HOM05D000904 ORTHO05D005281 2.9e-17 92.0 94 56.4
Sed0012640 Sechium edule HOM05D000904 ORTHO05D005281 6.6e-17 90.9 74 56.8
MELO3C026468.2 Cucumis melo HOM05D000904 ORTHO05D005281 1.9e-16 89.4 91 47.3
MELO3C034532.2 Cucumis melo HOM05D000904 ORTHO05D005281 1.6e-15 86.3 103 46.6
CsaV3_5G015550 Cucumis sativus L. HOM05D000904 ORTHO05D005281 4.7e-15 84.7 91 48.4
Gohir.D06G101100 Gossypium hirsutum HOM05D000904 ORTHO05D005281 2.3e-14 82.4 112 44.6
CsaV3_UNG162230 Cucumis sativus L. HOM05D000904 ORTHO05D005281 5.2e-14 81.3 91 48.4
Zm00001eb182190 Zea mays HOM05D000904 ORTHO05D005281 5.2e-14 81.3 86 50.0
Gorai.010G129200 Gossypium raimondii HOM05D000904 ORTHO05D005281 5.8e-13 77.8 60 60.0
QL02p103229 Quercus lobata HOM05D000001 ORTHO05D000003 2.3e-09 65.9 45 71.1
Lsat_1_v5_gn_6_74660 Lactuca sativa HOM05D000911 ORTHO05D005281 1.9e-08 62.8 41 75.6


User provided reference genes

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