Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027179 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 4.8e-70 267.7 133 100.0
CSS0049457 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 1.0e-43 180.3 91 100.0
Potri.004G168400 Populus trichocarpa HOM05D005339 ORTHO05D006561 3.2e-42 175.3 91 96.7
Atru.chr5.3227 Acer truncatum HOM05D005339 ORTHO05D006561 4.2e-42 174.9 91 95.6
Nn7g36850 Nelumbo nucifera HOM05D005339 ORTHO05D006561 4.2e-42 174.9 91 95.6
Rhsim11G0187800 Rhododendron simsii HOM05D005339 ORTHO05D006561 4.2e-42 174.9 91 96.7
vmacro02249 Vaccinium macrocarpon HOM05D005339 ORTHO05D006561 4.2e-42 174.9 91 96.7
Thecc.02G066900 Theobroma cacao HOM05D005339 ORTHO05D006561 7.2e-42 174.1 91 95.6
MELO3C020783.2 Cucumis melo HOM05D005339 ORTHO05D006561 9.4e-42 173.7 92 94.6
Manes.11G090000 Manihot esculenta HOM05D005339 ORTHO05D006561 9.4e-42 173.7 91 95.6
SGA_v2.0_scaffold58G20457 Striga asiatica HOM05D005339 ORTHO05D006561 9.4e-42 173.7 107 79.4
Actinidia20485 Actinidia chinensis HOM05D005339 ORTHO05D006561 1.2e-41 173.3 91 95.6
Ciclev10028803m.g Citrus clementina HOM05D005339 ORTHO05D006561 1.2e-41 173.3 91 94.5
Dinv41975 Davidia involucrata HOM05D005339 ORTHO05D006561 1.2e-41 173.3 91 95.6
CsaV3_2G015710 Cucumis sativus L. HOM05D005339 ORTHO05D006561 2.1e-41 172.6 91 94.5
arahy.Tifrunner.gnm1.ann1.RMHT0B Arachis hypogaea HOM05D005339 ORTHO05D006561 2.7e-41 172.2 91 94.5
CANSAT25G3263 Cannabis sativa HOM05D005339 ORTHO05D006561 2.7e-41 172.2 91 94.5
CDE04G0258 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 2.7e-41 172.2 91 94.5
Glyma.08G042200 Glycine max HOM05D005339 ORTHO05D006561 2.7e-41 172.2 91 94.5
Hma1.2p1_0032F.1_g019680 Hydrangea macrophylla HOM05D005339 ORTHO05D006561 2.7e-41 172.2 91 93.4
Manes.04G078200 Manihot esculenta HOM05D005339 ORTHO05D006561 2.7e-41 172.2 91 94.5
PGR142G1539 Punica granatum HOM05D005339 ORTHO05D006561 2.7e-41 172.2 91 94.5
VMungo0251G0038 Vigna mungo HOM05D005339 ORTHO05D006561 2.7e-41 172.2 91 94.5
Duzib132G0613 Durio zibethinus HOM05D005339 ORTHO05D006561 3.6e-41 171.8 91 94.5
Cpa.g.sc37.191 Carica papaya HOM05D005339 ORTHO05D006561 6.1e-41 171.0 91 94.5
Glyma.05G234700 Glycine max HOM05D005339 ORTHO05D006561 6.1e-41 171.0 91 93.4
Gohir.A03G203200 Gossypium hirsutum HOM05D005339 ORTHO05D006561 6.1e-41 171.0 91 94.5
Gohir.D02G224500 Gossypium hirsutum HOM05D005339 ORTHO05D006561 6.1e-41 171.0 91 94.5
Gorai.005G252300 Gossypium raimondii HOM05D005339 ORTHO05D006561 6.1e-41 171.0 91 94.5
HanXRQChr15g0478851 Helianthus annuus HOM05D005339 ORTHO05D006561 6.1e-41 171.0 91 94.5
Lsat_1_v5_gn_3_45301 Lactuca sativa HOM05D005339 ORTHO05D006561 6.1e-41 171.0 91 94.5
Medtr8g105120 Medicago truncatula HOM05D005339 ORTHO05D006561 6.1e-41 171.0 91 92.3
Oeu055639.3 Olea europaea HOM05D005339 ORTHO05D006561 6.1e-41 171.0 91 92.3
Psat7g008680 Pisum sativum HOM05D005339 ORTHO05D006561 6.1e-41 171.0 91 92.3
TWI31G0803 Tripterygium wilfordii HOM05D005339 ORTHO05D006561 6.1e-41 171.0 91 93.4
GSVIVG01024083001 Vitis vinifera HOM05D005339 ORTHO05D006561 6.1e-41 171.0 91 94.5
ATR0810G182 Amborella trichopoda HOM05D005339 ORTHO05D006561 8.0e-41 170.6 91 93.4
Lj4g0026543 Lotus japonicus HOM05D005339 ORTHO05D006561 8.0e-41 170.6 91 93.4
QL11p047539 Quercus lobata HOM05D005339 ORTHO05D006561 8.0e-41 170.6 91 94.5
QL11p047573 Quercus lobata HOM05D005339 ORTHO05D006561 8.0e-41 170.6 91 94.5
TAR376G0223 Trochodendron aralioides HOM05D005339 ORTHO05D006561 8.0e-41 170.6 91 93.4
unitig_744.g24266 Utricularia gibba HOM05D005339 ORTHO05D006561 8.0e-41 170.6 94 88.3
Potri.009G129700 Populus trichocarpa HOM05D005339 ORTHO05D006561 1.0e-40 170.2 91 93.4
Sabra04G0112800 Salix brachista HOM05D005339 ORTHO05D006561 1.0e-40 170.2 91 92.3
Aqoxy5G01796 Aquilegia oxysepala HOM05D005339 ORTHO05D006561 1.4e-40 169.9 91 93.4
CDE02G2588 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 1.4e-40 169.9 91 94.5
Cfa005184 Carpinus fangiana HOM05D005339 ORTHO05D006561 1.8e-40 169.5 91 93.4
ClCG02G011380 Citrullus lanatus HOM05D005339 ORTHO05D006561 1.8e-40 169.5 91 93.4
ECA246G3996 Erigeron canadensis HOM05D005339 ORTHO05D006561 1.8e-40 169.5 91 93.4
LjContig00310g0009118 Lotus japonicus HOM05D005339 ORTHO05D006561 1.8e-40 169.5 91 91.2
Phvul.002G320300 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 1.8e-40 169.5 91 93.4
THA.LOC104807785 Tarenaya hassleriana HOM05D005339 ORTHO05D006561 1.8e-40 169.5 91 92.3
TPR.G17076 Trifolium pratense HOM05D005339 ORTHO05D006561 1.8e-40 169.5 91 91.2
Lalb_Chr11g0072011 Lupinus albus HOM05D005339 ORTHO05D006561 2.3e-40 169.1 91 91.2
Haze_02197 Corylus avellana HOM05D005339 ORTHO05D006561 3.9e-40 168.3 91 92.3
Lj9C389T6 Lonicera japonica HOM05D005339 ORTHO05D006561 5.2e-40 167.9 91 92.3
Eucgr.I01375 Eucalyptus grandis HOM05D005339 ORTHO05D006561 6.7e-40 167.5 91 91.2
Ca_17265_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 8.8e-40 167.2 91 90.1
Ca_17286_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 8.8e-40 167.2 91 90.1
CAN.G588.26 Capsicum annuum HOM05D005339 ORTHO05D006561 1.1e-39 166.8 91 90.1
Lalb_Chr23g0275171 Lupinus albus HOM05D005339 ORTHO05D006561 1.1e-39 166.8 91 89.0
Nitab4.5_0000283g0140 Nicotiana tabacum HOM05D005339 ORTHO05D006561 1.1e-39 166.8 91 90.1
Nitab4.5_0000980g0240 Nicotiana tabacum HOM05D005339 ORTHO05D006561 1.1e-39 166.8 91 90.1
Solyc01g111140.3 Solanum lycopersicum HOM05D005339 ORTHO05D006561 1.1e-39 166.8 91 90.1
Sopen01g053200 Solanum pennellii HOM05D005339 ORTHO05D006561 1.1e-39 166.8 91 90.1
PGSC0003DMG400001633 Solanum tuberosum HOM05D005339 ORTHO05D006561 1.1e-39 166.8 91 90.1
Thhalv10000232m.g Eutrema salsugineum HOM05D005339 ORTHO05D006561 1.5e-39 166.4 91 90.1
Peaxi162Scf00362g01036 Petunia axillaris HOM05D005339 ORTHO05D006561 1.5e-39 166.4 91 89.0
BcaB08g34965 Brassica carinata HOM05D005339 ORTHO05D006561 2.0e-39 166.0 91 90.1
Carub.0004s0017 Capsella rubella HOM05D005339 ORTHO05D006561 2.0e-39 166.0 91 90.1
QL11p047601 Quercus lobata HOM05D005339 ORTHO05D006561 2.6e-39 165.6 93 91.4
Sed0019675 Sechium edule HOM05D005339 ORTHO05D006561 2.6e-39 165.6 91 91.2
AL4G10240 Arabidopsis lyrata HOM05D005339 ORTHO05D006561 3.3e-39 165.2 91 90.1
AT2G21150 Arabidopsis thaliana HOM05D005339 ORTHO05D006561 3.3e-39 165.2 91 90.1
Cc11_g02780 Coffea canephora HOM05D005339 ORTHO05D006561 4.4e-39 164.9 91 89.0
BcaC07g41172 Brassica carinata HOM05D005339 ORTHO05D006561 5.7e-39 164.5 91 89.0
Os09g0535300 Oryza sativa ssp. japonica HOM05D005339 ORTHO05D006561 5.7e-39 164.5 90 90.0
SalBow6G1349 Salvia bowleyana HOM05D005339 ORTHO05D006561 5.7e-39 164.5 90 90.0
Sc08g0003210 Simmondsia chinensis HOM05D005339 ORTHO05D006561 5.7e-39 164.5 91 89.0
CiPaw.06G125300 Carya illinoinensis HOM05D005339 ORTHO05D006561 7.4e-39 164.1 91 91.2
MBI19_g09243_MAGBIO Magnolia biondii HOM05D005339 ORTHO05D006561 7.4e-39 164.1 91 93.4
Sp4g00300 Schrenkiella parvula HOM05D005339 ORTHO05D006561 7.4e-39 164.1 91 89.0
Migut.B00167 Erythranthe guttata HOM05D005339 ORTHO05D006561 9.7e-39 163.7 91 89.0
Sabra09G0099200 Salix brachista HOM05D005339 ORTHO05D006561 9.7e-39 163.7 91 90.1
Ah.01g009160 Amaranthus hybridus HOM05D005339 ORTHO05D006561 1.3e-38 163.3 91 86.8
Hund06405 Selenicereus undatus HOM05D005339 ORTHO05D006561 1.3e-38 163.3 91 86.8
DCAR_022955 Daucus carota HOM05D005339 ORTHO05D006561 1.7e-38 162.9 92 89.1
DCAR_022956 Daucus carota HOM05D005339 ORTHO05D006561 1.7e-38 162.9 92 89.1
RcHm_v2.0_Chr2g0122771 Rosa chinensis HOM05D005339 ORTHO05D006561 1.7e-38 162.9 91 87.9
Zm00001eb103630 Zea mays HOM05D005339 ORTHO05D006561 1.7e-38 162.9 90 88.9
Prupe.7G010600 Prunus persica HOM05D005339 ORTHO05D006561 2.2e-38 162.5 91 87.9
arahy.Tifrunner.gnm1.ann1.UV505Z Arachis hypogaea HOM05D005339 ORTHO05D006561 3.7e-38 161.8 107 80.4
PSO170G1371 Papaver somniferum HOM05D005339 ORTHO05D006561 4.8e-38 161.4 91 87.9
PSO700G0269 Papaver somniferum HOM05D005339 ORTHO05D006561 4.8e-38 161.4 91 87.9
CiPaw.05G077200 Carya illinoinensis HOM05D005339 ORTHO05D006561 8.2e-38 160.6 91 86.8
FvH4_1g25110 Fragaria vesca HOM05D005339 ORTHO05D006561 1.1e-37 160.2 91 86.8
Mapoly0015s0022 Marchantia polymorpha HOM05D005339 ORTHO05D006561 1.1e-37 160.2 90 88.9
MD14G1006100 Malus domestica HOM05D005339 ORTHO05D006561 1.8e-37 159.5 91 85.7
SMO117G0089 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 5.3e-37 157.9 90 87.8
AagrBONN_evm.TU.Sc2ySwM_344.4430 Anthoceros agrestis HOM05D005339 ORTHO05D006561 7.0e-37 157.5 90 87.8
A09p58500 Brassica napus HOM05D005339 ORTHO05D006561 7.0e-37 157.5 98 82.7
Pp3c17_13560 Physcomitrium patens HOM05D005339 ORTHO05D006561 7.0e-37 157.5 90 87.8
A04p15920 Brassica napus HOM05D005339 ORTHO05D006561 9.1e-37 157.1 92 87.0
C04p50370 Brassica napus HOM05D005339 ORTHO05D006561 1.2e-36 156.8 91 87.9
C08p41800 Brassica napus HOM05D005339 ORTHO05D006561 1.2e-36 156.8 100 81.0
BolC4t26635H Brassica oleracea HOM05D005339 ORTHO05D006561 1.2e-36 156.8 91 87.9
BolC8t51743H Brassica oleracea HOM05D005339 ORTHO05D006561 1.2e-36 156.8 100 81.0
Pp3c2_11550 Physcomitrium patens HOM05D005339 ORTHO05D006561 4.5e-36 154.8 100 80.0
Aa31LG7G15530 Aethionema arabicum HOM05D005339 ORTHO05D006561 5.9e-36 154.5 91 86.8
MD12G1008800 Malus domestica HOM05D005339 ORTHO05D006561 5.9e-36 154.5 91 83.5
AUR62013089 Chenopodium quinoa HOM05D005339 ORTHO05D006561 5.0e-35 151.4 92 83.7
BraA04t17225Z Brassica rapa HOM05D005339 ORTHO05D006561 1.1e-34 150.2 91 86.8
AUR62010093 Chenopodium quinoa HOM05D005339 ORTHO05D006561 2.5e-34 149.1 91 83.5
BraA09t41237Z Brassica rapa HOM05D005339 ORTHO05D006561 9.7e-31 137.1 120 65.0
VMungo0251G1189 Vigna mungo HOM05D005339 ORTHO05D006561 2.4e-29 132.5 65 95.4
FAN23G1071 Fragaria x ananassa HOM05D005339 ORTHO05D006561 6.8e-24 114.4 91 72.5
Cre07.g341300 Chlamydomonas reinhardtii HOM05D005339 ORTHO05D006561 1.2e-23 113.6 90 58.9
FAN26G3137 Fragaria x ananassa HOM05D005339 ORTHO05D006561 4.4e-23 111.7 91 71.4
EL10Ac9g21438 Beta vulgaris HOM05D005339 ORTHO05D006561 1.6e-20 103.2 122 53.3
FAN28G0542 Fragaria x ananassa HOM05D005339 ORTHO05D006561 1.6e-20 103.2 119 54.6
FAN28G2786 Fragaria x ananassa HOM05D005339 ORTHO05D006561 1.6e-20 103.2 119 54.6
MCO15G465 Micromonas commoda HOM05D005339 ORTHO05D006561 1.3e-19 100.1 90 52.2
COL.COLO4_17257 Corchorus olitorius HOM05D005339 ORTHO05D003646 9.5e-18 94.0 53 88.7
PRCOL_00006995 Prasinoderma coloniale HOM05D005339 ORTHO05D006561 2.1e-17 92.8 90 48.9
FAN19G3054 Fragaria x ananassa HOM05D005339 ORTHO05D006561 8.9e-16 87.4 45 91.1
CBR_g47091 Chara braunii HOM05D005339 ORTHO05D006561 3.7e-14 82.0 44 90.9
TPR.G35331 Trifolium pratense HOM05D005339 ORTHO05D006561 2.7e-12 75.9 37 97.3
SEGI_00782 Sequoiadendron giganteum HOM05D005339 ORTHO05D006561 4.5e-12 75.1 46 73.9
HPP92_028582 Vanilla planifolia HOM05D005339 ORTHO05D006561 2.9e-06 55.8 38 73.7


User provided reference genes

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