Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027028 Camellia sinensis var. sinensis HOM05D001776 ORTHO05D001771 1.2e-83 313.2 158 100.0
Actinidia38521 Actinidia chinensis HOM05D001776 ORTHO05D001771 6.3e-45 184.5 126 73.8
Dinv26467 Davidia involucrata HOM05D001776 ORTHO05D001771 6.3e-45 184.5 126 71.4
Dinv12597 Davidia involucrata HOM05D001776 ORTHO05D001771 1.0e-42 177.2 126 69.0
CSS0006410 Camellia sinensis var. sinensis HOM05D001776 ORTHO05D001771 2.2e-42 176.0 132 68.9
Actinidia31883 Actinidia chinensis HOM05D001776 ORTHO05D001771 5.5e-41 171.4 128 71.9
Actinidia02483 Actinidia chinensis HOM05D001776 ORTHO05D001771 2.0e-38 162.9 121 69.4
Nn8g41094 Nelumbo nucifera HOM05D001776 ORTHO05D001771 1.0e-34 150.6 124 65.3
GSVIVG01032322001 Vitis vinifera HOM05D001776 ORTHO05D001771 2.9e-34 149.1 127 63.0
Hma1.2p1_0314F.1_g121970 Hydrangea macrophylla HOM05D001776 ORTHO05D001771 1.9e-33 146.4 133 62.4
Hma1.2p1_0284F.1_g113830 Hydrangea macrophylla HOM05D001776 ORTHO05D001771 2.5e-33 146.0 125 64.8
TAR383G0816 Trochodendron aralioides HOM05D001776 ORTHO05D001771 1.6e-32 143.3 125 59.2
vmacro22291 Vaccinium macrocarpon HOM05D001776 ORTHO05D001771 4.7e-32 141.7 124 62.9
Rhsim03G0268500 Rhododendron simsii HOM05D001776 ORTHO05D001771 1.8e-31 139.8 123 62.6
QL11p009249 Quercus lobata HOM05D001776 ORTHO05D001771 2.3e-31 139.4 125 56.8
Atru.chr7.974 Acer truncatum HOM05D001776 ORTHO05D001771 3.0e-31 139.0 130 58.5
TAR626G1512 Trochodendron aralioides HOM05D001776 ORTHO05D001771 5.2e-31 138.3 126 58.7
Manes.15G099400 Manihot esculenta HOM05D001776 ORTHO05D001771 3.4e-30 135.6 120 60.8
Actinidia13370 Actinidia chinensis HOM05D001776 ORTHO05D001771 2.2e-29 132.9 104 66.3
Thecc.09G194000 Theobroma cacao HOM05D001776 ORTHO05D001771 2.2e-29 132.9 127 58.3
Cfa020736 Carpinus fangiana HOM05D001776 ORTHO05D001771 2.4e-28 129.4 126 57.9
Hund19364 Selenicereus undatus HOM05D001776 ORTHO05D001771 2.4e-28 129.4 133 51.9
MSTRG.26521 Avicennia marina HOM05D001776 ORTHO05D001771 1.2e-27 127.1 124 54.8
Ciclev10008843m.g Citrus clementina HOM05D001776 ORTHO05D001771 1.6e-27 126.7 127 55.9
CsaV3_2G009010 Cucumis sativus L. HOM05D001776 ORTHO05D001771 3.5e-27 125.6 125 51.2
Eucgr.C00067 Eucalyptus grandis HOM05D001776 ORTHO05D001771 5.9e-27 124.8 119 52.9
FvH4_4g06240 Fragaria vesca HOM05D001776 ORTHO05D001771 5.9e-27 124.8 122 57.4
FAN07G0851 Fragaria x ananassa HOM05D001776 ORTHO05D001771 5.9e-27 124.8 122 57.4
FAN12G2880 Fragaria x ananassa HOM05D001776 ORTHO05D001771 5.9e-27 124.8 122 57.4
FAN17G1350 Fragaria x ananassa HOM05D001776 ORTHO05D001771 5.9e-27 124.8 122 57.4
FAN22G1406 Fragaria x ananassa HOM05D001776 ORTHO05D001771 5.9e-27 124.8 122 57.4
RcHm_v2.0_Chr4g0397961 Rosa chinensis HOM05D001776 ORTHO05D001771 5.9e-27 124.8 122 56.6
CDE04G2318 Ceratophyllum demersum HOM05D001776 ORTHO05D001771 7.8e-27 124.4 125 52.0
CiPaw.15G155200 Carya illinoinensis HOM05D001776 ORTHO05D001771 1.0e-26 124.0 119 58.0
MELO3C003942.2 Cucumis melo HOM05D001776 ORTHO05D001771 1.0e-26 124.0 125 51.2
Duzib168G1817 Durio zibethinus HOM05D001776 ORTHO05D001771 1.3e-26 123.6 131 55.0
Prupe.1G065600 Prunus persica HOM05D001776 ORTHO05D001771 1.3e-26 123.6 126 55.6
CANSAT80G0007 Cannabis sativa HOM05D001776 ORTHO05D001771 1.7e-26 123.2 118 59.3
MSTRG.10463 Avicennia marina HOM05D001776 ORTHO05D001771 2.3e-26 122.9 98 60.2
Oeu036947.1 Olea europaea HOM05D001776 ORTHO05D001771 2.3e-26 122.9 99 64.6
EL10Ac2g03640 Beta vulgaris HOM05D001776 ORTHO05D001771 3.0e-26 122.5 125 55.2
ClCG11G011500 Citrullus lanatus HOM05D001776 ORTHO05D001771 3.9e-26 122.1 125 51.2
Phvul.004G177500 Phaseolus vulgaris HOM05D001776 ORTHO05D001771 3.9e-26 122.1 126 55.6
CiPaw.16G103200 Carya illinoinensis HOM05D001776 ORTHO05D001771 6.6e-26 121.3 127 53.5
SGA_v2.0_scaffold21G09625 Striga asiatica HOM05D001776 ORTHO05D001771 8.6e-26 120.9 128 53.1
AUR62020710 Chenopodium quinoa HOM05D001776 ORTHO05D001771 1.1e-25 120.6 122 52.5
Potri.018G146700 Populus trichocarpa HOM05D001776 ORTHO05D001771 1.1e-25 120.6 125 55.2
PGR142G2549 Punica granatum HOM05D001776 ORTHO05D001771 1.1e-25 120.6 99 62.6
Potri.018G145500 Populus trichocarpa HOM05D001776 ORTHO05D001771 1.5e-25 120.2 125 55.2
AUR62028014 Chenopodium quinoa HOM05D001776 ORTHO05D001771 2.5e-25 119.4 96 61.5
ECA234G3906 Erigeron canadensis HOM05D001776 ORTHO05D001771 2.5e-25 119.4 115 49.6
TWI32G0050 Tripterygium wilfordii HOM05D001776 ORTHO05D001771 5.6e-25 118.2 127 55.9
MBI13_g34294_MAGBIO Magnolia biondii HOM05D001776 ORTHO05D001771 7.3e-25 117.9 126 52.4
PSO063G5421 Papaver somniferum HOM05D001776 ORTHO05D001771 7.3e-25 117.9 128 51.6
Sed0013888 Sechium edule HOM05D001776 ORTHO05D001771 7.3e-25 117.9 125 50.4
Cpa.g.sc115.32 Carica papaya HOM05D001776 ORTHO05D001771 1.2e-24 117.1 128 52.3
Aa31LG9G5220 Aethionema arabicum HOM05D001776 ORTHO05D001771 1.6e-24 116.7 95 62.1
AL7G44140 Arabidopsis lyrata HOM05D001776 ORTHO05D001771 1.6e-24 116.7 117 54.7
Duzib150G1194 Durio zibethinus HOM05D001776 ORTHO05D001771 2.8e-24 115.9 120 53.3
Aqoxy7G02693 Aquilegia oxysepala HOM05D001776 ORTHO05D001771 3.6e-24 115.5 118 52.5
Gohir.A05G001300 Gossypium hirsutum HOM05D001776 ORTHO05D001771 4.7e-24 115.2 125 51.2
Nn2g12782 Nelumbo nucifera HOM05D001776 ORTHO05D001771 4.7e-24 115.2 75 70.7
Peaxi162Scf00954g00319 Petunia axillaris HOM05D001776 ORTHO05D001771 1.0e-23 114.0 125 52.8
Haze_19051 Corylus avellana HOM05D001776 ORTHO05D001771 1.4e-23 113.6 126 54.8
Gohir.D05G001600 Gossypium hirsutum HOM05D001776 ORTHO05D001771 1.4e-23 113.6 125 51.2
Gorai.009G001500 Gossypium raimondii HOM05D001776 ORTHO05D001771 1.4e-23 113.6 125 51.2
Lj2g0010885 Lotus japonicus HOM05D001776 ORTHO05D001771 1.8e-23 113.2 126 48.4
TWI34G1874 Tripterygium wilfordii HOM05D001776 ORTHO05D001771 1.8e-23 113.2 86 69.8
arahy.Tifrunner.gnm1.ann1.N90ILP Arachis hypogaea HOM05D001776 ORTHO05D001771 2.3e-23 112.8 124 50.8
arahy.Tifrunner.gnm1.ann1.QSQE7C Arachis hypogaea HOM05D001776 ORTHO05D001771 2.3e-23 112.8 124 50.8
A08p09650 Brassica napus HOM05D001776 ORTHO05D001771 3.1e-23 112.5 108 56.5
BraA08t32962Z Brassica rapa HOM05D001776 ORTHO05D001771 3.1e-23 112.5 108 56.5
BcaB04g18054 Brassica carinata HOM05D001776 ORTHO05D001771 4.0e-23 112.1 110 59.1
Glyma.07G130300 Glycine max HOM05D001776 ORTHO05D001771 5.2e-23 111.7 118 53.4
vmacro20780 Vaccinium macrocarpon HOM05D001776 ORTHO05D001771 5.2e-23 111.7 136 51.5
BcaC07g37670 Brassica carinata HOM05D001776 ORTHO05D001771 6.8e-23 111.3 108 57.4
BolC8t48040H Brassica oleracea HOM05D001776 ORTHO05D001771 6.8e-23 111.3 108 57.4
AT5G35330 Arabidopsis thaliana HOM05D001776 ORTHO05D001771 1.2e-22 110.5 100 58.0
Lalb_Chr24g0401801 Lupinus albus HOM05D001776 ORTHO05D001771 1.5e-22 110.2 130 51.5
COL.COLO4_33454 Corchorus olitorius HOM05D001776 ORTHO05D001771 2.0e-22 109.8 127 52.8
Potri.006G077600 Populus trichocarpa HOM05D001776 ORTHO05D001771 2.0e-22 109.8 124 51.6
CARHR217370 Cardamine hirsuta HOM05D001776 ORTHO05D001771 2.6e-22 109.4 105 57.1
Nitab4.5_0004188g0070 Nicotiana tabacum HOM05D001776 ORTHO05D001771 2.6e-22 109.4 125 50.4
Oeu021032.1 Olea europaea HOM05D001776 ORTHO05D001771 3.4e-22 109.0 128 50.0
Glyma.01G002200 Glycine max HOM05D001776 ORTHO05D001771 4.4e-22 108.6 121 51.2
SGA_v2.0_scaffold31G12721 Striga asiatica HOM05D001776 ORTHO05D001771 4.4e-22 108.6 97 58.8
TPR.G21354 Trifolium pratense HOM05D001776 ORTHO05D001771 4.4e-22 108.6 122 50.0
SGA_v2.0_scaffold693G53460 Striga asiatica HOM05D001776 ORTHO05D001771 9.8e-22 107.5 128 47.7
unitig_899.g15185 Utricularia gibba HOM05D005244 ORTHO05D006539 9.8e-22 107.5 98 54.1
VMungo0464G1505 Vigna mungo HOM05D001776 ORTHO05D001771 9.8e-22 107.5 90 62.2
Thhalv10003457m.g Eutrema salsugineum HOM05D001776 ORTHO05D001771 1.3e-21 107.1 95 55.8
Ca_25630_v3 Cicer arietinum L. HOM05D001776 ORTHO05D001771 2.9e-21 105.9 122 50.8
CDE07G1244 Ceratophyllum demersum HOM05D002718 ORTHO05D003027 4.9e-21 105.1 73 68.5
Nitab4.5_0000413g0060 Nicotiana tabacum HOM05D001776 ORTHO05D001771 4.9e-21 105.1 99 57.6
Nitab4.5_0001205g0020 Nicotiana tabacum HOM05D001776 ORTHO05D001771 4.9e-21 105.1 99 57.6
Ah.11g044270 Amaranthus hybridus HOM05D001776 ORTHO05D001771 6.4e-21 104.8 90 58.9
MD16G1239500 Malus domestica HOM05D001776 ORTHO05D001771 6.4e-21 104.8 132 48.5
HanXRQChr12g0359211 Helianthus annuus HOM05D001776 ORTHO05D001771 1.1e-20 104.0 92 51.1
Sc23g0004330 Simmondsia chinensis HOM05D001776 ORTHO05D001771 1.1e-20 104.0 124 51.6
CAN.G106.15 Capsicum annuum HOM05D001776 ORTHO05D001771 1.4e-20 103.6 126 46.8
Medtr6g093020 Medicago truncatula HOM05D001776 ORTHO05D001771 1.9e-20 103.2 122 48.4
Carub.0007s3115 Capsella rubella HOM05D001776 ORTHO05D001771 2.4e-20 102.8 87 58.6
THA.LOC104815317 Tarenaya hassleriana HOM05D001776 ORTHO05D001771 2.4e-20 102.8 127 46.5
SalBow6G0354 Salvia bowleyana HOM05D001776 ORTHO05D001771 4.1e-20 102.1 141 44.0
Cc00_g00460 Coffea canephora HOM05D001776 ORTHO05D001771 5.4e-20 101.7 126 44.4
Sabra06G0058700 Salix brachista HOM05D001776 ORTHO05D001771 5.4e-20 101.7 63 74.6
PSO017G4274 Papaver somniferum HOM05D001776 ORTHO05D001771 7.0e-20 101.3 122 52.5
Sopen05g027760 Solanum pennellii HOM05D000002 ORTHO05D000001 7.0e-20 101.3 126 46.0
PGSC0003DMG400013699 Solanum tuberosum HOM05D001776 ORTHO05D001771 1.2e-19 100.5 126 46.0
PSO478G1737 Papaver somniferum HOM05D001776 ORTHO05D001771 2.7e-19 99.4 122 51.6
Migut.B00848 Erythranthe guttata HOM05D001776 ORTHO05D001771 3.5e-19 99.0 87 56.3
Oeu057461.1 Olea europaea HOM05D001776 ORTHO05D001771 3.5e-19 99.0 99 55.6
THA.LOC104808910 Tarenaya hassleriana HOM05D001776 ORTHO05D001771 3.5e-19 99.0 120 48.3
Nitab4.5_0005411g0070 Nicotiana tabacum HOM05D001776 ORTHO05D001771 6.0e-19 98.2 61 73.8
QL11p011525 Quercus lobata HOM05D001776 ORTHO05D001771 1.7e-18 96.7 113 46.0
HPP92_028347 Vanilla planifolia HOM05D005445 ORTHO05D007043 1.7e-18 96.7 84 58.3
Oeu000375.3 Olea europaea HOM05D001776 ORTHO05D001771 8.6e-18 94.4 106 53.8
Lj5A743T19 Lonicera japonica HOM05D001776 ORTHO05D001771 1.5e-17 93.6 68 67.6
ECA240G0360 Erigeron canadensis HOM05D001776 ORTHO05D001771 1.9e-17 93.2 110 46.4
Os09g0494300 Oryza sativa ssp. japonica HOM05D001776 ORTHO05D001771 7.3e-17 91.3 84 47.6
HPP92_017094 Vanilla planifolia HOM05D001776 ORTHO05D001771 9.5e-17 90.9 124 41.9
HPP92_010798 Vanilla planifolia HOM05D001776 ORTHO05D001771 2.1e-16 89.7 120 40.8
Lsat_1_v5_gn_5_82421 Lactuca sativa HOM05D001776 ORTHO05D001771 2.8e-16 89.4 59 64.4
SEGI_01377 Sequoiadendron giganteum HOM05D001776 ORTHO05D001771 3.6e-16 89.0 95 47.4
Medtr3g435470 Medicago truncatula HOM05D001776 ORTHO05D001771 1.4e-15 87.0 117 41.9
Peaxi162Scf00320g00413 Petunia axillaris HOM05D001776 ORTHO05D001771 1.4e-15 87.0 100 50.0
Medtr3g435450 Medicago truncatula HOM05D001776 ORTHO05D001771 3.1e-15 85.9 117 43.6
HanXRQChr03g0067341 Helianthus annuus HOM05D001776 ORTHO05D001771 4.0e-15 85.5 92 47.8
Oeu015727.1 Olea europaea HOM05D001776 ORTHO05D001771 4.0e-15 85.5 106 49.1
Zm00001eb102090 Zea mays HOM05D001776 ORTHO05D001771 4.0e-15 85.5 80 46.2
TPR.G21362 Trifolium pratense HOM05D001776 ORTHO05D001771 5.2e-15 85.1 52 71.2
Os06g0702100 Oryza sativa ssp. japonica HOM05D001776 ORTHO05D001771 8.9e-15 84.3 90 46.7
Zm00001eb317100 Zea mays HOM05D001776 ORTHO05D001771 2.6e-14 82.8 65 50.8
Oeu052293.1 Olea europaea HOM05D001776 ORTHO05D001771 3.4e-14 82.4 99 50.5
AL7G44150 Arabidopsis lyrata HOM05D001776 ORTHO05D001771 9.8e-14 80.9 66 57.6
unitig_8.g4679 Utricularia gibba HOM05D001776 ORTHO05D001771 1.3e-13 80.5 59 61.0
AT5G35338 Arabidopsis thaliana HOM05D001776 ORTHO05D001771 2.2e-13 79.7 66 57.6
Thhalv10003468m.g Eutrema salsugineum HOM05D001776 ORTHO05D001771 3.7e-13 79.0 55 65.5
ATR0626G029 Amborella trichopoda HOM05D001776 ORTHO05D001771 4.9e-13 78.6 137 36.5
Oeu028810.1 Olea europaea HOM05D001776 ORTHO05D001771 8.3e-13 77.8 99 44.4
Ca_25603_v3 Cicer arietinum L. HOM05D001776 ORTHO05D001771 1.1e-12 77.4 102 47.1
Medtr3g037440 Medicago truncatula HOM05D001776 ORTHO05D001771 1.1e-12 77.4 68 54.4
HanXRQChr09g0245901 Helianthus annuus HOM05D001776 ORTHO05D001771 1.4e-12 77.0 92 41.3
Migut.K00354 Erythranthe guttata HOM05D001776 ORTHO05D001771 4.1e-12 75.5 52 67.3
Migut.K01233 Erythranthe guttata HOM05D001776 ORTHO05D001771 4.1e-12 75.5 52 67.3
Migut.K01234 Erythranthe guttata HOM05D001776 ORTHO05D001771 4.1e-12 75.5 52 67.3
Lsat_1_v5_gn_7_57621 Lactuca sativa HOM05D001776 ORTHO05D001771 5.4e-12 75.1 92 40.2
Ca_25632_v3 Cicer arietinum L. HOM05D001776 ORTHO05D001771 1.2e-11 73.9 106 44.3
Zm00001eb120500 Zea mays HOM05D001776 ORTHO05D001771 1.2e-11 73.9 93 44.1
Migut.K00353 Erythranthe guttata HOM05D001776 ORTHO05D001771 2.7e-11 72.8 64 59.4
Medtr3g037400 Medicago truncatula HOM05D008161 ORTHO05D001771 4.6e-11 72.0 69 52.2
SGA_v2.0_scaffold229G43362 Striga asiatica HOM05D001776 ORTHO05D001771 5.1e-10 68.6 75 46.7
Oeu015364.1 Olea europaea HOM05D001776 ORTHO05D001771 6.6e-10 68.2 51 64.7
Sopen04g008850 Solanum pennellii HOM05D001776 ORTHO05D001771 6.6e-10 68.2 70 48.6
SEGI_11634 Sequoiadendron giganteum HOM05D001776 ORTHO05D001771 1.1e-09 67.4 63 44.4
Solyc07g015930.3 Solanum lycopersicum HOM05D001776 ORTHO05D001771 7.3e-09 64.7 70 47.1
SGA_v2.0_scaffold45G17055 Striga asiatica HOM05D001776 ORTHO05D001771 9.5e-09 64.3 60 48.3
PGSC0003DMG400006275 Solanum tuberosum HOM05D001776 ORTHO05D001771 8.1e-08 61.2 49 51.0
Migut.J00832 Erythranthe guttata HOM05D001776 ORTHO05D001771 1.8e-07 60.1 100 41.0
Lalb_Chr14g0361701 Lupinus albus HOM05D001776 ORTHO05D001771 6.8e-07 58.2 118 36.4
Solyc10g018460.1 Solanum lycopersicum HOM05D001776 ORTHO05D001771 2.6e-06 56.2 70 42.9
CDE01G0196 Ceratophyllum demersum HOM05D001776 ORTHO05D001771 3.4e-06 55.8 61 39.3
CDE12G0897 Ceratophyllum demersum HOM05D001776 ORTHO05D001771 3.4e-06 55.8 61 41.0
SMO111G0066 Selaginella moellendorffii HOM05D001776 ORTHO05D001771 5.8e-06 55.1 48 45.8
Carub.0007s3165 Capsella rubella HOM05D001776 ORTHO05D001771 7.6e-06 54.7 56 53.6
PGSC0003DMG400006274 Solanum tuberosum HOM05D001776 ORTHO05D001771 7.6e-06 54.7 49 46.9
MBI19_g46384_MAGBIO Magnolia biondii HOM05D001776 ORTHO05D001771 9.9e-06 54.3 60 35.0
HPP92_015811 Vanilla planifolia HOM05D001776 ORTHO05D001771 9.9e-06 54.3 61 49.2


User provided reference genes

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