Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0026074 Camellia sinensis var. sinensis HOM05D004558 ORTHO05D005647 5.3e-221 770.8 405 100.0
CSS0045826 Camellia sinensis var. sinensis HOM05D004558 ORTHO05D005647 5.3e-221 770.8 405 100.0
Nitab4.5_0000123g0170 Nicotiana tabacum HOM05D004558 ORTHO05D005647 2.2e-198 695.7 406 86.5
Aqoxy2G00035_Aqoxy2G00036 Aquilegia oxysepala HOM05D004558 ORTHO05D005647 2.8e-198 695.3 411 86.4
Thecc.05G130200 Theobroma cacao HOM05D004558 ORTHO05D005647 2.8e-198 695.3 405 86.9
Nitab4.5_0001270g0120 Nicotiana tabacum HOM05D004558 ORTHO05D005647 4.8e-198 694.5 407 86.5
Cpa.g.sc92.57 Carica papaya HOM05D004558 ORTHO05D005647 6.3e-198 694.1 411 85.6
Phvul.001G108700 Phaseolus vulgaris HOM05D004558 ORTHO05D005647 1.8e-197 692.6 407 86.0
TWI53G2040 Tripterygium wilfordii HOM05D004558 ORTHO05D005647 1.8e-197 692.6 409 85.8
QL07p015188 Quercus lobata HOM05D004558 ORTHO05D005647 3.1e-197 691.8 409 86.6
Hund24509 Selenicereus undatus HOM05D004558 ORTHO05D005647 3.1e-197 691.8 408 88.7
VMungo1383G3341 Vigna mungo HOM05D004558 ORTHO05D005647 3.1e-197 691.8 418 84.0
Duzib128G1152 Durio zibethinus HOM05D004558 ORTHO05D005647 5.3e-197 691.0 405 86.2
AUR62020990 Chenopodium quinoa HOM05D004558 ORTHO05D005647 9.1e-197 690.3 405 84.9
TAR369G0680 Trochodendron aralioides HOM05D004558 ORTHO05D005647 1.6e-196 689.5 405 86.7
arahy.Tifrunner.gnm1.ann1.VDKY5W Arachis hypogaea HOM05D004558 ORTHO05D005647 2.0e-196 689.1 410 84.9
Duzib093G1273 Durio zibethinus HOM05D004558 ORTHO05D005647 2.6e-196 688.7 405 85.9
Prupe.7G022500 Prunus persica HOM05D004558 ORTHO05D005647 2.6e-196 688.7 418 83.7
FAN19G1019 Fragaria x ananassa HOM05D004558 ORTHO05D005647 3.5e-196 688.3 410 84.9
Potri.006G027300 Populus trichocarpa HOM05D004558 ORTHO05D005647 3.5e-196 688.3 408 85.3
Cc06_g22740 Coffea canephora HOM05D004558 ORTHO05D005647 4.5e-196 688.0 356 94.9
MBI13_g30268_MAGBIO Magnolia biondii HOM05D004558 ORTHO05D005647 7.7e-196 687.2 409 86.1
arahy.Tifrunner.gnm1.ann1.XE2WF0 Arachis hypogaea HOM05D004558 ORTHO05D005647 1.0e-195 686.8 421 86.2
AUR62018443 Chenopodium quinoa HOM05D004558 ORTHO05D005647 1.0e-195 686.8 405 84.7
ClCG04G004930 Citrullus lanatus HOM05D004558 ORTHO05D005647 1.0e-195 686.8 412 85.2
Manes.09G073800 Manihot esculenta HOM05D004558 ORTHO05D005647 1.0e-195 686.8 405 85.2
Actinidia00883 Actinidia chinensis HOM05D004558 ORTHO05D005647 1.7e-195 686.0 357 93.8
FAN23G1063 Fragaria x ananassa HOM05D004558 ORTHO05D005647 1.7e-195 686.0 355 94.6
Actinidia38207 Actinidia chinensis HOM05D004558 ORTHO05D005647 2.2e-195 685.6 357 94.1
FvH4_1g28960 Fragaria vesca HOM05D004558 ORTHO05D005647 3.8e-195 684.9 407 85.0
Sabra16G0030900 Salix brachista HOM05D004558 ORTHO05D005647 5.0e-195 684.5 408 85.3
Eucgr.A02177 Eucalyptus grandis HOM05D004558 ORTHO05D005647 6.5e-195 684.1 410 85.4
FAN26G0634 Fragaria x ananassa HOM05D004558 ORTHO05D005647 6.5e-195 684.1 355 94.4
FAN28G2842 Fragaria x ananassa HOM05D004558 ORTHO05D005647 6.5e-195 684.1 355 94.4
Gohir.A01G192400 Gossypium hirsutum HOM05D004558 ORTHO05D005647 6.5e-195 684.1 409 85.1
Potri.016G025000 Populus trichocarpa HOM05D004558 ORTHO05D005647 6.5e-195 684.1 408 85.3
RcHm_v2.0_Chr3g0494361 Rosa chinensis HOM05D004558 ORTHO05D005647 6.5e-195 684.1 401 85.5
TWI77G0093 Tripterygium wilfordii HOM05D004558 ORTHO05D005647 6.5e-195 684.1 407 84.5
CsaV3_4G031720 Cucumis sativus L. HOM05D004558 ORTHO05D005647 8.5e-195 683.7 409 84.4
TPR.G23197 Trifolium pratense HOM05D004558 ORTHO05D005647 1.1e-194 683.3 409 84.1
CiPaw.09G162600 Carya illinoinensis HOM05D004558 ORTHO05D005647 1.9e-194 682.6 406 85.2
Rhsim04G0119100 Rhododendron simsii HOM05D004558 ORTHO05D005647 1.9e-194 682.6 352 94.3
Cfa019915 Carpinus fangiana HOM05D004558 ORTHO05D005647 2.5e-194 682.2 409 84.4
THA.LOC104803235 Tarenaya hassleriana HOM05D004558 ORTHO05D005647 2.5e-194 682.2 406 84.0
TAR546G0001 Trochodendron aralioides HOM05D004558 ORTHO05D005647 2.5e-194 682.2 405 85.4
Sc19g0007850 Simmondsia chinensis HOM05D004558 ORTHO05D005647 3.2e-194 681.8 364 91.8
Ciclev10011842m.g Citrus clementina HOM05D004558 ORTHO05D005647 4.2e-194 681.4 420 83.1
Glyma.03G119500 Glycine max HOM05D004558 ORTHO05D005647 4.2e-194 681.4 357 92.7
GSVIVG01025841001 Vitis vinifera HOM05D004558 ORTHO05D005647 7.2e-194 680.6 356 93.8
ATR1096G103 Amborella trichopoda HOM05D004558 ORTHO05D005647 1.2e-193 679.9 405 84.9
PGSC0003DMG400007188 Solanum tuberosum HOM05D004558 ORTHO05D005647 1.2e-193 679.9 407 85.0
vmacro08967 Vaccinium macrocarpon HOM05D004558 ORTHO05D005647 1.2e-193 679.9 352 94.0
Oeu060750.2 Olea europaea HOM05D004558 ORTHO05D005647 1.6e-193 679.5 420 82.6
Haze_20335 Corylus avellana HOM05D004558 ORTHO05D005647 2.1e-193 679.1 405 84.2
ECA247G1747 Erigeron canadensis HOM05D004558 ORTHO05D005647 2.1e-193 679.1 410 83.2
Lj1g0019045 Lotus japonicus HOM05D004558 ORTHO05D005647 2.1e-193 679.1 405 84.7
THA.LOC104824384 Tarenaya hassleriana HOM05D004558 ORTHO05D005647 2.1e-193 679.1 406 83.7
Sopen10g028720 Solanum pennellii HOM05D004558 ORTHO05D005647 3.6e-193 678.3 407 84.8
Hma1.2p1_0251F.1_g102500 Hydrangea macrophylla HOM05D004558 ORTHO05D005647 4.7e-193 677.9 361 92.0
DCAR_016944 Daucus carota HOM05D004558 ORTHO05D005647 8.0e-193 677.2 408 84.1
PSO384G3158 Papaver somniferum HOM05D004558 ORTHO05D005647 8.0e-193 677.2 405 83.2
Sabra06G0020200 Salix brachista HOM05D004558 ORTHO05D005647 8.0e-193 677.2 406 83.7
Sed0025713 Sechium edule HOM05D004558 ORTHO05D005647 8.0e-193 677.2 409 83.9
DCAR_013513 Daucus carota HOM05D004558 ORTHO05D005647 1.0e-192 676.8 405 84.0
Solyc10g077040.2 Solanum lycopersicum HOM05D004558 ORTHO05D005647 1.0e-192 676.8 407 84.5
CANSAT78G1575 Cannabis sativa HOM05D004558 ORTHO05D005647 1.4e-192 676.4 410 85.1
PGR042G2423 Punica granatum HOM05D004558 ORTHO05D005647 1.8e-192 676.0 409 83.9
PSO339G0825 Papaver somniferum HOM05D004558 ORTHO05D005647 2.3e-192 675.6 405 83.0
Lalb_Chr14g0365301 Lupinus albus HOM05D004558 ORTHO05D005647 5.2e-192 674.5 409 82.9
Migut.K00174 Erythranthe guttata HOM05D004558 ORTHO05D005647 6.7e-192 674.1 407 82.6
Rhsim04G0119000 Rhododendron simsii HOM05D004558 ORTHO05D005647 1.5e-191 672.9 366 90.7
Gohir.D01G177500 Gossypium hirsutum HOM05D004558 ORTHO05D005647 2.0e-191 672.5 409 84.6
CAN.G959.37 Capsicum annuum HOM05D004558 ORTHO05D005647 3.3e-191 671.8 405 84.2
Aa31LG10G11840 Aethionema arabicum HOM05D004558 ORTHO05D005647 4.4e-191 671.4 406 82.8
BcaC07g40007 Brassica carinata HOM05D004558 ORTHO05D005647 7.5e-191 670.6 412 82.3
MSTRG.6287 Avicennia marina HOM05D004558 ORTHO05D005647 9.7e-191 670.2 407 85.0
Thhalv10006009m.g Eutrema salsugineum HOM05D004558 ORTHO05D005647 3.7e-190 668.3 410 82.2
A09p49810 Brassica napus HOM05D004558 ORTHO05D005647 4.8e-190 667.9 410 83.4
BraA09t40434Z Brassica rapa HOM05D004558 ORTHO05D005647 4.8e-190 667.9 410 83.4
BcaC08g44811 Brassica carinata HOM05D004558 ORTHO05D005647 6.3e-190 667.5 412 81.8
SGA_v2.0_scaffold66G22316 Striga asiatica HOM05D004558 ORTHO05D005647 8.2e-190 667.2 409 82.9
HPP92_000696 Vanilla planifolia HOM05D004558 ORTHO05D005647 1.4e-189 666.4 405 83.7
BcaB02g07634 Brassica carinata HOM05D004558 ORTHO05D005647 1.8e-189 666.0 412 81.6
BraA07t29976Z Brassica rapa HOM05D004558 ORTHO05D005647 1.8e-189 666.0 412 81.8
BolC6t37555H Brassica oleracea HOM05D004558 ORTHO05D005647 2.4e-189 665.6 412 81.6
BcaC07g40105 Brassica carinata HOM05D004558 ORTHO05D005647 4.1e-189 664.8 410 82.9
Os01g0279100 Oryza sativa ssp. japonica HOM05D004558 ORTHO05D005647 4.1e-189 664.8 356 90.7
Peaxi162Scf00003g05355 Petunia axillaris HOM05D004558 ORTHO05D005647 4.1e-189 664.8 426 81.0
A07p23140 Brassica napus HOM05D004558 ORTHO05D005647 5.3e-189 664.5 412 81.6
CARHR167090 Cardamine hirsuta HOM05D004558 ORTHO05D005647 5.3e-189 664.5 412 80.8
Gorai.002G225700 Gossypium raimondii HOM05D004558 ORTHO05D005647 5.3e-189 664.5 418 82.8
Oeu023011.1 Olea europaea HOM05D004558 ORTHO05D005647 5.3e-189 664.5 371 88.9
Zm00001eb332650 Zea mays HOM05D004558 ORTHO05D005647 5.3e-189 664.5 356 90.7
Zm00001eb129000 Zea mays HOM05D004558 ORTHO05D005647 7.0e-189 664.1 356 90.7
Carub.0005s2368 Capsella rubella HOM05D004558 ORTHO05D005647 1.6e-188 662.9 410 81.5
SEGI_29193 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 1.6e-188 662.9 356 90.2
Medtr7g088340 Medicago truncatula HOM05D004558 ORTHO05D005647 2.0e-188 662.5 408 84.8
CDE02G2354 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 1.7e-187 659.4 406 81.0
Sp5g05650 Schrenkiella parvula HOM05D004558 ORTHO05D005647 2.2e-187 659.1 356 90.4
AL5G38370 Arabidopsis lyrata HOM05D004558 ORTHO05D005647 6.5e-187 657.5 356 89.3
Lsat_1_v5_gn_9_30221 Lactuca sativa HOM05D004558 ORTHO05D005647 6.5e-187 657.5 411 82.2
HanXRQChr10g0291961 Helianthus annuus HOM05D004558 ORTHO05D005647 8.5e-187 657.1 353 90.4
Lj1A1078T64 Lonicera japonica HOM05D004558 ORTHO05D005647 1.5e-186 656.4 412 81.8
unitig_46.g18485 Utricularia gibba HOM05D004558 ORTHO05D005647 1.2e-185 653.3 405 83.0
C06p23840 Brassica napus HOM05D004558 ORTHO05D005647 2.1e-185 652.5 416 80.0
Lalb_Chr24g0400681 Lupinus albus HOM05D004558 ORTHO05D005647 2.8e-182 642.1 407 77.6
Mapoly0124s0017 Marchantia polymorpha HOM05D004558 ORTHO05D005647 3.6e-177 625.2 354 84.5
AT3G56940 Arabidopsis thaliana HOM05D004558 ORTHO05D005647 1.4e-176 623.2 333 90.1
SMO119G0375 Selaginella moellendorffii HOM05D004558 ORTHO05D005647 4.4e-175 618.2 356 83.4
unitig_37.g12773 Utricularia gibba HOM05D004558 ORTHO05D005647 1.1e-173 613.6 372 83.6
Pp3c11_7910 Physcomitrium patens HOM05D004558 ORTHO05D005647 1.2e-172 610.1 356 82.3
AagrBONN_evm.TU.Sc2ySwM_228.50 Anthoceros agrestis HOM05D004558 ORTHO05D005647 3.5e-172 608.6 355 82.0
EL10Ac3g07349 Beta vulgaris HOM05D004558 ORTHO05D005647 3.5e-172 608.6 407 79.4
CDE04G3757 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 4.3e-170 601.7 408 75.7
Atru.chr1.1539 Acer truncatum HOM05D004558 ORTHO05D005647 2.8e-161 572.4 338 88.8
SGA_v2.0_scaffold69G23196 Striga asiatica HOM05D004558 ORTHO05D005647 1.2e-156 557.0 402 72.1
PRCOL_00006479 Prasinoderma coloniale HOM05D004558 ORTHO05D005647 3.7e-150 535.4 356 72.5
Ca_08344_v3 Cicer arietinum L. HOM05D004558 ORTHO05D005647 4.9e-150 535.0 329 83.0
Psat3g082520 Pisum sativum HOM05D004558 ORTHO05D005647 9.2e-149 530.8 324 85.2
Dinv11638 Davidia involucrata HOM05D004558 ORTHO05D005647 6.6e-147 524.6 317 83.3
Cre12.g510050 Chlamydomonas reinhardtii HOM05D004558 ORTHO05D005647 2.5e-146 522.7 360 68.9
Pp3c7_26570 Physcomitrium patens HOM05D004558 ORTHO05D005647 1.9e-141 506.5 272 88.6
HPP92_000650 Vanilla planifolia HOM05D004558 ORTHO05D005647 1.9e-141 506.5 309 82.8
Ah.04g150190 Amaranthus hybridus HOM05D004558 ORTHO05D005647 1.7e-139 500.0 407 67.1
MCO13G411 Micromonas commoda HOM05D004558 ORTHO05D005647 4.3e-138 495.4 345 70.4
SMO115G0161 Selaginella moellendorffii HOM05D004558 ORTHO05D005647 6.2e-137 491.5 356 69.1
Cre07.g346050 Chlamydomonas reinhardtii HOM05D004558 ORTHO05D005647 1.9e-130 469.9 344 65.7
Glyma.19G123800 Glycine max HOM05D004558 ORTHO05D005647 3.6e-129 465.7 299 81.3
MELO3C026802.2 Cucumis melo HOM05D004558 ORTHO05D005647 4.8e-129 465.3 289 81.3
SalBow6G0122 Salvia bowleyana HOM05D004558 ORTHO05D005647 5.3e-128 461.8 248 91.1
SalBow1G4785 Salvia bowleyana HOM05D004558 ORTHO05D005647 4.5e-119 432.2 285 77.9
CDE02G0342 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 4.8e-113 412.1 231 85.3
CBR_g50688 Chara braunii HOM05D004558 ORTHO05D005647 3.8e-102 375.9 235 76.2
Oeu021019.1 Olea europaea HOM05D004558 ORTHO05D005647 3.1e-96 356.3 319 61.1
BolC4t25242H Brassica oleracea HOM05D004558 ORTHO05D005647 1.7e-57 227.6 132 84.1
C04p35620 Brassica napus HOM05D004558 ORTHO05D005647 2.2e-57 227.3 132 83.3
CBR_g55376 Chara braunii HOM05D004558 ORTHO05D005647 2.4e-56 223.8 354 39.3
SEGI_05566 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 2.4e-48 197.2 118 81.4
SEGI_20922 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 3.2e-48 196.8 118 80.5
C08p32210 Brassica napus HOM05D004558 ORTHO05D005647 5.8e-42 176.0 104 84.6
A04p03620 Brassica napus HOM05D004558 ORTHO05D005647 3.7e-41 173.3 103 84.5
BraA04t16073Z Brassica rapa HOM05D004558 ORTHO05D005647 3.7e-41 173.3 103 84.5
BcaC02g09879 Brassica carinata HOM05D004558 ORTHO05D005647 1.4e-35 154.8 94 81.9
Pp3c2_30650 Physcomitrium patens HOM05D004558 ORTHO05D005647 1.4e-35 154.8 106 74.5
CDE02G4696 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 7.1e-32 142.5 94 74.5
BcaB02g08342 Brassica carinata HOM05D004558 ORTHO05D005647 6.8e-27 125.9 105 67.6
Lalb_Chr22g0357681 Lupinus albus HOM05D004558 ORTHO05D005647 3.4e-26 123.6 77 79.2
Ah.13g077400 Amaranthus hybridus HOM05D004558 ORTHO05D000435 1.3e-25 121.7 164 46.3
ClCG10G010310 Citrullus lanatus HOM05D004558 ORTHO05D005647 5.4e-24 116.3 71 73.2
AagrBONN_evm.TU.Sc2ySwM_368.2127 Anthoceros agrestis HOM05D004558 ORTHO05D005647 6.6e-22 109.4 59 86.4
ClCG10G010320 Citrullus lanatus HOM05D004558 ORTHO05D005647 8.7e-22 109.0 81 70.4
MD00G1107700 Malus domestica HOM05D004558 ORTHO05D005647 1.6e-20 104.8 62 85.5
Lalb_Chr22g0358091 Lupinus albus HOM05D004558 ORTHO05D005647 1.1e-19 102.1 47 93.6
AagrBONN_evm.TU.Sc2ySwM_344.4282 Anthoceros agrestis HOM05D004558 ORTHO05D000003 3.4e-18 97.1 59 81.4
SEGI_00644 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 7.3e-13 79.3 42 92.9
Lalb_Chr22g0358081 Lupinus albus HOM05D004558 ORTHO05D005647 3.1e-11 73.9 39 89.7
MSTRG.26191 Avicennia marina HOM05D004558 ORTHO05D087779 5.1e-06 56.6 53 56.6


User provided reference genes

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