Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025417 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D043322 7.0e-44 180.3 93 100.0
CSS0023490 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D002980 3.8e-13 78.2 78 60.3
CSS0045110 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D002980 3.8e-13 78.2 78 60.3
CAN.G899.12 Capsicum annuum HOM05D001670 ORTHO05D002980 2.7e-11 72.0 86 48.8
Dinv44111 Davidia involucrata HOM05D001670 ORTHO05D002980 2.7e-11 72.0 87 48.3
Peaxi162Scf00377g00038 Petunia axillaris HOM05D001670 ORTHO05D002980 2.7e-11 72.0 86 48.8
Rhsim01G0135600 Rhododendron simsii HOM05D001670 ORTHO05D002980 4.6e-11 71.2 81 51.9
Nitab4.5_0002304g0030 Nicotiana tabacum HOM05D001670 ORTHO05D002980 6.0e-11 70.9 83 50.6
Solyc01g090780.3 Solanum lycopersicum HOM05D001670 ORTHO05D002980 1.3e-10 69.7 86 47.7
Sopen01g036510 Solanum pennellii HOM05D001670 ORTHO05D002980 1.3e-10 69.7 86 47.7
HanXRQChr04g0123421 Helianthus annuus HOM05D001670 ORTHO05D002980 2.3e-10 68.9 87 44.8
CiPaw.13G031300 Carya illinoinensis HOM05D001670 ORTHO05D002980 3.0e-10 68.6 89 42.7
Nitab4.5_0000706g0120 Nicotiana tabacum HOM05D001670 ORTHO05D002980 3.0e-10 68.6 83 49.4
Gohir.A12G095700 Gossypium hirsutum HOM05D001670 ORTHO05D002980 5.1e-10 67.8 88 42.0
QL04p035871 Quercus lobata HOM05D001670 ORTHO05D002980 5.1e-10 67.8 87 42.5
Duzib268G0141 Durio zibethinus HOM05D001670 ORTHO05D002980 6.6e-10 67.4 85 45.9
Gohir.D12G098300 Gossypium hirsutum HOM05D001670 ORTHO05D002980 8.7e-10 67.0 87 42.5
Gorai.008G107100 Gossypium raimondii HOM05D001670 ORTHO05D002980 8.7e-10 67.0 87 42.5
Hma1.2p1_0341F.1_g130250 Hydrangea macrophylla HOM05D001670 ORTHO05D002980 1.1e-09 66.6 80 50.0
Rhsim04G0099300 Rhododendron simsii HOM05D004426 ORTHO05D005417 1.1e-09 66.6 47 76.6
Ciclev10018430m.g Citrus clementina HOM05D001670 ORTHO05D002980 1.9e-09 65.9 87 43.7
Manes.05G050200 Manihot esculenta HOM05D001670 ORTHO05D002980 1.9e-09 65.9 82 47.6
Thecc.01G385600 Theobroma cacao HOM05D001670 ORTHO05D002980 1.9e-09 65.9 87 43.7
Rhsim04G0126200 Rhododendron simsii HOM05D001670 ORTHO05D043322 2.5e-09 65.5 52 71.2
Sabra02G0111500 Salix brachista HOM05D001670 ORTHO05D002980 2.5e-09 65.5 87 41.4
Duzib133G0195 Durio zibethinus HOM05D001670 ORTHO05D002980 3.3e-09 65.1 84 45.2
SHI13578 Sapria himalayana HOM05D001670 ORTHO05D002980 3.3e-09 65.1 83 43.4
CiPaw.14G024400 Carya illinoinensis HOM05D001670 ORTHO05D002980 4.3e-09 64.7 84 42.9
Prupe.2G135900 Prunus persica HOM05D001670 ORTHO05D002980 5.6e-09 64.3 88 42.0
Cfa011137 Carpinus fangiana HOM05D001670 ORTHO05D002980 7.3e-09 63.9 85 42.4
Lalb_Chr07g0195691 Lupinus albus HOM05D001670 ORTHO05D002980 7.3e-09 63.9 89 43.8
ECA236G0609 Erigeron canadensis HOM05D001670 ORTHO05D002980 9.6e-09 63.5 87 42.5
Lsat_1_v5_gn_7_10221 Lactuca sativa HOM05D001670 ORTHO05D002980 9.6e-09 63.5 78 46.2
TWI14G1227 Tripterygium wilfordii HOM05D001670 ORTHO05D002980 9.6e-09 63.5 87 43.7
Gohir.A11G078000 Gossypium hirsutum HOM05D001670 ORTHO05D002980 2.1e-08 62.4 78 46.2
Gohir.D11G082400 Gossypium hirsutum HOM05D001670 ORTHO05D002980 2.1e-08 62.4 78 46.2
Gorai.007G088100 Gossypium raimondii HOM05D001670 ORTHO05D002980 2.1e-08 62.4 78 46.2
Atru.chr5.219 Acer truncatum HOM05D001670 ORTHO05D002980 3.6e-08 61.6 54 55.6
Lalb_Chr13g0290371 Lupinus albus HOM05D001670 ORTHO05D002980 3.6e-08 61.6 82 41.5
Ca_23116_v3 Cicer arietinum L. HOM05D001670 ORTHO05D002980 4.8e-08 61.2 45 71.1
Phvul.010G056800 Phaseolus vulgaris HOM05D001670 ORTHO05D002980 4.8e-08 61.2 87 42.5
Psat4g209400 Pisum sativum HOM05D001670 ORTHO05D002980 4.8e-08 61.2 45 71.1
Lj9C563G7 Lonicera japonica HOM05D001670 ORTHO05D002980 8.1e-08 60.5 67 53.7
Manes.01G270100 Manihot esculenta HOM05D001670 ORTHO05D002980 8.1e-08 60.5 89 42.7
arahy.Tifrunner.gnm1.ann1.1V1Y36 Arachis hypogaea HOM05D001670 ORTHO05D002980 1.1e-07 60.1 84 45.2
arahy.Tifrunner.gnm1.ann1.5NE8AH Arachis hypogaea HOM05D001670 ORTHO05D002980 1.1e-07 60.1 84 45.2
ClCG05G000260 Citrullus lanatus HOM05D001670 ORTHO05D002980 1.4e-07 59.7 75 46.7
Lj7C538G19 Lonicera japonica HOM05D001670 ORTHO05D002980 1.4e-07 59.7 54 55.6
Lj3g0005567 Lotus japonicus HOM05D001670 ORTHO05D002980 1.4e-07 59.7 45 68.9
TPR.G28734 Trifolium pratense HOM05D001670 ORTHO05D002980 1.4e-07 59.7 78 46.2
MSTRG.20721 Avicennia marina HOM05D001670 ORTHO05D002980 1.8e-07 59.3 88 42.0
PGR042G0136 Punica granatum HOM05D001670 ORTHO05D002980 1.8e-07 59.3 85 42.4
Sed0002470 Sechium edule HOM05D001670 ORTHO05D002980 1.8e-07 59.3 70 47.1
Cpa.g.sc914.1 Carica papaya HOM05D001670 ORTHO05D002980 2.4e-07 58.9 82 42.7
HanXRQChr06g0168951 Helianthus annuus HOM05D001670 ORTHO05D002980 2.4e-07 58.9 78 46.2
Hund27384 Selenicereus undatus HOM05D001670 ORTHO05D002980 2.4e-07 58.9 88 44.3
Potri.014G058800 Populus trichocarpa HOM05D001670 ORTHO05D002980 3.1e-07 58.5 75 45.3
DCAR_015867 Daucus carota HOM05D001670 ORTHO05D002980 4.0e-07 58.2 47 63.8
CsaV3_3G007410 Cucumis sativus L. HOM05D001670 ORTHO05D002980 5.3e-07 57.8 82 42.7
Glyma.07G108700 Glycine max HOM05D001670 ORTHO05D002980 5.3e-07 57.8 79 43.0
Glyma.03G118400 Glycine max HOM05D001670 ORTHO05D002980 6.9e-07 57.4 79 43.0
TWI59G0301 Tripterygium wilfordii HOM05D001670 ORTHO05D002980 6.9e-07 57.4 53 54.7
VMungo0331G0876 Vigna mungo HOM05D001670 ORTHO05D002980 6.9e-07 57.4 88 42.0
Sc13g0006690 Simmondsia chinensis HOM05D001670 ORTHO05D002980 9.0e-07 57.0 87 41.4
MD02G1214300 Malus domestica HOM05D001670 ORTHO05D002980 1.2e-06 56.6 68 44.1
Eucgr.E01609 Eucalyptus grandis HOM05D001670 ORTHO05D002980 1.5e-06 56.2 78 42.3
Potri.002G143000 Populus trichocarpa HOM05D001670 ORTHO05D002980 1.5e-06 56.2 87 39.1
RcHm_v2.0_Chr1g0348711 Rosa chinensis HOM05D001670 ORTHO05D002980 1.5e-06 56.2 89 41.6
GSVIVG01018178001 Vitis vinifera HOM05D001670 ORTHO05D002980 1.5e-06 56.2 85 37.6
Migut.B01578 Erythranthe guttata HOM05D001670 ORTHO05D002980 2.6e-06 55.5 88 40.9
FvH4_7g10770 Fragaria vesca HOM05D001670 ORTHO05D002980 2.6e-06 55.5 89 40.4
FAN01G0667 Fragaria x ananassa HOM05D001670 ORTHO05D002980 2.6e-06 55.5 89 40.4
FAN03G2300 Fragaria x ananassa HOM05D001670 ORTHO05D002980 2.6e-06 55.5 89 40.4
FAN06G0311 Fragaria x ananassa HOM05D001670 ORTHO05D002980 2.6e-06 55.5 89 40.4
FAN06G1683 Fragaria x ananassa HOM05D001670 ORTHO05D002980 2.6e-06 55.5 89 40.4
FAN10G0390 Fragaria x ananassa HOM05D001670 ORTHO05D002980 2.6e-06 55.5 89 40.4
FAN10G2564 Fragaria x ananassa HOM05D001670 ORTHO05D002980 2.6e-06 55.5 89 40.4
Cc02_g24610 Coffea canephora HOM05D001670 ORTHO05D002980 4.4e-06 54.7 94 40.4
AT1G02080 Arabidopsis thaliana HOM05D001670 ORTHO05D002980 5.8e-06 54.3 37 73.0
Oeu064574.1 Olea europaea HOM05D001670 ORTHO05D002980 5.8e-06 54.3 56 62.5
CANSAT21G0618 Cannabis sativa HOM05D001670 ORTHO05D002980 7.6e-06 53.9 77 39.0
EL10Ac1g00822 Beta vulgaris HOM05D001670 ORTHO05D002980 9.9e-06 53.5 87 40.2
THA.LOC104814077 Tarenaya hassleriana HOM05D001670 ORTHO05D002980 9.9e-06 53.5 70 42.9


User provided reference genes

Program Settings