Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025079 Camellia sinensis var. sinensis HOM05D005531 ORTHO05D006332 3.2e-116 421.8 212 100.0
CSS0024284 Camellia sinensis var. sinensis HOM05D005531 ORTHO05D006332 5.4e-116 421.0 211 99.5
Actinidia12100 Actinidia chinensis HOM05D005531 ORTHO05D006332 5.8e-102 374.4 212 89.2
Dinv09088 Davidia involucrata HOM05D005531 ORTHO05D006332 1.3e-98 363.2 211 88.2
GSVIVG01038136001 Vitis vinifera HOM05D005531 ORTHO05D006332 1.2e-96 356.7 208 84.6
MSTRG.22027 Avicennia marina HOM05D005531 ORTHO05D006332 3.1e-95 352.1 195 89.2
Oeu021570.1 Olea europaea HOM05D005531 ORTHO05D006332 3.1e-95 352.1 212 84.0
TAR362G0104 Trochodendron aralioides HOM05D005531 ORTHO05D006332 4.0e-95 351.7 205 83.9
Cc01_g03590 Coffea canephora HOM05D005531 ORTHO05D006332 6.8e-95 350.9 185 91.9
Thecc.04G166800 Theobroma cacao HOM05D005531 ORTHO05D006332 1.2e-94 350.1 210 83.8
SGA_v2.0_scaffold25G10999 Striga asiatica HOM05D005531 ORTHO05D006332 5.8e-94 347.8 200 85.0
Gohir.A02G090900 Gossypium hirsutum HOM05D005531 ORTHO05D006332 3.8e-93 345.1 210 81.9
Gohir.D02G109600 Gossypium hirsutum HOM05D005531 ORTHO05D006332 1.4e-92 343.2 210 81.4
Gorai.005G123800 Gossypium raimondii HOM05D005531 ORTHO05D006332 1.4e-92 343.2 210 81.4
CiPaw.01G171100 Carya illinoinensis HOM05D005531 ORTHO05D006332 2.4e-92 342.4 208 83.7
HanXRQChr14g0432131 Helianthus annuus HOM05D005531 ORTHO05D006332 2.4e-92 342.4 211 82.0
CAN.G87.3 Capsicum annuum HOM05D005531 ORTHO05D006332 3.2e-92 342.0 188 88.3
TWI15G0620 Tripterygium wilfordii HOM05D005531 ORTHO05D006332 4.2e-92 341.7 192 88.0
Cfa015263 Carpinus fangiana HOM05D005531 ORTHO05D006332 7.1e-92 340.9 208 82.2
COL.COLO4_07535 Corchorus olitorius HOM05D005531 ORTHO05D006332 7.1e-92 340.9 189 87.8
Sopen03g015200 Solanum pennellii HOM05D005531 ORTHO05D006332 1.2e-91 340.1 188 87.2
Eucgr.A00006 Eucalyptus grandis HOM05D005531 ORTHO05D006332 1.6e-91 339.7 200 84.0
Ca_18643_v3 Cicer arietinum L. HOM05D005531 ORTHO05D006332 3.5e-91 338.6 192 86.5
Lsat_1_v5_gn_2_38340 Lactuca sativa HOM05D005531 ORTHO05D006332 6.0e-91 337.8 211 80.1
ECA238G0637 Erigeron canadensis HOM05D005531 ORTHO05D006332 1.0e-90 337.0 211 81.5
Atru.chr4.1396 Acer truncatum HOM05D005531 ORTHO05D006332 2.3e-90 335.9 205 82.0
MD04G1048800 Malus domestica HOM05D005531 ORTHO05D006332 3.9e-90 335.1 197 85.8
Phvul.003G296200 Phaseolus vulgaris HOM05D005531 ORTHO05D006332 6.6e-90 334.3 192 85.4
TPR.G23541 Trifolium pratense HOM05D005531 ORTHO05D006332 6.6e-90 334.3 192 85.9
FvH4_5g12060 Fragaria vesca HOM05D005531 ORTHO05D006332 1.9e-89 332.8 195 84.6
FAN04G0151 Fragaria x ananassa HOM05D005531 ORTHO05D006332 1.9e-89 332.8 195 84.6
FAN08G1892 Fragaria x ananassa HOM05D005531 ORTHO05D006332 1.9e-89 332.8 195 84.6
FAN18G3014 Fragaria x ananassa HOM05D005531 ORTHO05D006332 1.9e-89 332.8 195 84.6
FAN18G3485 Fragaria x ananassa HOM05D005531 ORTHO05D006332 1.9e-89 332.8 195 84.6
Lj4g0014314 Lotus japonicus HOM05D005531 ORTHO05D006332 1.9e-89 332.8 187 87.7
Aa31LG10G7090 Aethionema arabicum HOM05D005531 ORTHO05D006332 2.8e-88 328.9 212 77.8
RcHm_v2.0_Chr4g0406021 Rosa chinensis HOM05D005531 ORTHO05D006332 3.6e-88 328.6 195 84.1
Glyma.02G137000 Glycine max HOM05D005531 ORTHO05D006332 1.4e-87 326.6 196 82.7
Lalb_Chr16g0384491 Lupinus albus HOM05D005531 ORTHO05D006332 1.4e-87 326.6 195 83.1
Manes.04G036700 Manihot esculenta HOM05D005531 ORTHO05D006332 1.8e-87 326.2 200 82.5
FAN13G1713 Fragaria x ananassa HOM05D005531 ORTHO05D006332 3.1e-87 325.5 195 82.6
arahy.Tifrunner.gnm1.ann1.6AY0JN Arachis hypogaea HOM05D005531 ORTHO05D006332 9.0e-87 323.9 185 88.1
SalBow6G4103 Salvia bowleyana HOM05D005531 ORTHO05D006332 9.0e-87 323.9 249 69.5
Medtr4g087250 Medicago truncatula HOM05D005531 ORTHO05D006332 1.5e-86 323.2 180 87.8
THA.LOC104817577 Tarenaya hassleriana HOM05D005531 ORTHO05D006332 1.5e-86 323.2 186 86.0
Rhsim02G0083700 Rhododendron simsii HOM05D005531 ORTHO05D006332 4.4e-86 321.6 253 69.2
Sp5g10250 Schrenkiella parvula HOM05D005531 ORTHO05D006332 3.8e-85 318.5 205 78.5
Hund12388 Selenicereus undatus HOM05D005531 ORTHO05D006332 3.8e-85 318.5 199 80.4
AT3G52050 Arabidopsis thaliana HOM05D005531 ORTHO05D006332 4.9e-85 318.2 210 75.7
AL5G32590 Arabidopsis lyrata HOM05D005531 ORTHO05D006332 1.1e-84 317.0 206 77.2
A09p45110 Brassica napus HOM05D005531 ORTHO05D006332 2.1e-83 312.8 182 84.6
Prupe.1G206500 Prunus persica HOM05D005531 ORTHO05D006332 2.1e-83 312.8 208 77.9
BcaNung06967 Brassica carinata HOM05D005531 ORTHO05D006332 2.7e-83 312.4 182 84.1
C08p27300 Brassica napus HOM05D005531 ORTHO05D006332 2.7e-83 312.4 182 84.1
Aqoxy1G02291 Aquilegia oxysepala HOM05D005531 ORTHO05D006332 3.5e-83 312.0 208 74.5
Carub.0005s1837 Capsella rubella HOM05D005531 ORTHO05D006332 4.6e-83 311.6 198 78.3
MBI08_g25563_MAGBIO Magnolia biondii HOM05D005531 ORTHO05D006332 4.6e-83 311.6 182 83.5
MELO3C033213.2 Cucumis melo HOM05D005531 ORTHO05D006332 6.0e-83 311.2 200 77.0
Sed0016017 Sechium edule HOM05D005531 ORTHO05D006332 6.0e-83 311.2 200 79.5
Potri.013G125700 Populus trichocarpa HOM05D005531 ORTHO05D006332 7.9e-83 310.8 203 76.4
CsaV3_4G029900 Cucumis sativus L. HOM05D005531 ORTHO05D006332 1.3e-82 310.1 200 76.5
PGR042G0031 Punica granatum HOM05D005531 ORTHO05D006332 2.3e-82 309.3 200 80.0
BraA09t39972Z Brassica rapa HOM05D005531 ORTHO05D006332 1.3e-80 303.5 188 81.4
CDE07G1035 Ceratophyllum demersum HOM05D005531 ORTHO05D006332 1.3e-80 303.5 196 77.0
Os03g0227300 Oryza sativa ssp. japonica HOM05D005531 ORTHO05D006332 2.8e-80 302.4 208 70.7
Migut.N03071 Erythranthe guttata HOM05D005531 ORTHO05D006332 3.6e-80 302.0 202 76.2
BcaB01g00451 Brassica carinata HOM05D005531 ORTHO05D006332 4.8e-80 301.6 176 83.5
DCAR_028442 Daucus carota HOM05D005531 ORTHO05D006332 4.8e-80 301.6 187 81.3
Nn7g37674 Nelumbo nucifera HOM05D005531 ORTHO05D006332 6.2e-80 301.2 212 75.9
BolC8t50347H Brassica oleracea HOM05D005531 ORTHO05D006332 1.4e-79 300.1 192 79.7
CANSAT54G2817 Cannabis sativa HOM05D005531 ORTHO05D006332 1.8e-79 299.7 189 81.5
Psat7g121280 Pisum sativum HOM05D005531 ORTHO05D006332 2.4e-79 299.3 194 78.9
Duzib151G0770 Durio zibethinus HOM05D005531 ORTHO05D006332 1.2e-78 297.0 165 87.9
Thhalv10010410m.g Eutrema salsugineum HOM05D005531 ORTHO05D006332 7.6e-78 294.3 206 72.8
Glyma.07G208400 Glycine max HOM05D005531 ORTHO05D006332 9.9e-78 293.9 187 79.7
arahy.Tifrunner.gnm1.ann1.77ZG52 Arachis hypogaea HOM05D005531 ORTHO05D006332 1.6e-75 286.6 185 80.5
HPP92_024943 Vanilla planifolia HOM05D005531 ORTHO05D006332 1.8e-74 283.1 195 70.8
Sabra13G0104500 Salix brachista HOM05D005531 ORTHO05D006332 2.4e-71 272.7 277 55.2
ATR0743G039 Amborella trichopoda HOM05D005531 ORTHO05D006332 3.1e-71 272.3 182 74.7
PSO017G5810 Papaver somniferum HOM05D005531 ORTHO05D006332 5.8e-70 268.1 206 65.0
PSO675G8407 Papaver somniferum HOM05D005531 ORTHO05D006332 1.9e-68 263.1 188 69.1
SEGI_01886 Sequoiadendron giganteum HOM05D005531 ORTHO05D006332 4.6e-67 258.5 181 68.0
HPP92_024926 Vanilla planifolia HOM05D005531 ORTHO05D006332 1.6e-64 250.0 174 70.1
EL10Ac3g06068 Beta vulgaris HOM05D005531 ORTHO05D006332 2.4e-63 246.1 183 71.0
PSO675G6185 Papaver somniferum HOM05D005531 ORTHO05D006332 9.3e-60 234.2 191 64.4
Oeu016608.2 Olea europaea HOM05D005531 ORTHO05D006332 5.7e-57 224.9 119 92.4
SMO232G0046 Selaginella moellendorffii HOM05D005531 ORTHO05D006332 3.4e-54 215.7 179 56.4
Zm00001eb399280 Zea mays HOM05D005531 ORTHO05D006332 5.9e-54 214.9 128 81.2
Ciclev10021434m.g Citrus clementina HOM05D005531 ORTHO05D006332 3.2e-52 209.1 113 88.5
AagrBONN_evm.TU.Sc2ySwM_228.5815 Anthoceros agrestis HOM05D005531 ORTHO05D006332 1.1e-44 184.1 178 52.2
QL10p054586 Quercus lobata HOM05D005531 ORTHO05D006332 1.4e-44 183.7 94 95.7
QL93p1902_0778 Quercus lobata HOM05D005531 ORTHO05D006332 1.4e-44 183.7 94 95.7
PSO017G4245 Papaver somniferum HOM05D005531 ORTHO05D006332 2.5e-44 183.0 112 76.8
Pp3c16_17520 Physcomitrium patens HOM05D005531 ORTHO05D006332 3.2e-44 182.6 179 50.3
AagrBONN_evm.TU.Sc2ySwM_228.1809 Anthoceros agrestis HOM05D005531 ORTHO05D006332 7.2e-44 181.4 194 49.5
Haze_01370 Corylus avellana HOM05D005531 ORTHO05D006332 3.6e-43 179.1 94 93.6
Sabra13G0105100 Salix brachista HOM05D005531 ORTHO05D006332 7.0e-39 164.9 95 86.3
Mapoly0001s0155 Marchantia polymorpha HOM05D005531 ORTHO05D006332 9.1e-39 164.5 183 48.6
VMungo0251G0056 Vigna mungo HOM05D005531 ORTHO05D006332 4.5e-38 162.2 126 69.8
AUR62002375 Chenopodium quinoa HOM05D005531 ORTHO05D006332 1.9e-36 156.8 88 87.5
AUR62023806 Chenopodium quinoa HOM05D005531 ORTHO05D006332 1.9e-36 156.8 88 87.5
HPP92_024946 Vanilla planifolia HOM05D005531 ORTHO05D006332 7.5e-33 144.8 88 78.4
BolC7t45193H Brassica oleracea HOM05D005531 ORTHO05D006332 2.8e-32 142.9 103 68.9
unitig_0.g2525 Utricularia gibba HOM05D005531 ORTHO05D006332 9.1e-31 137.9 152 53.9
ClCG04G002830 Citrullus lanatus HOM05D005531 ORTHO05D006332 2.0e-30 136.7 88 76.1
Cpa.g.sc9.359 Carica papaya HOM05D005531 ORTHO05D006332 1.3e-29 134.0 94 74.5
CARHR161680 Cardamine hirsuta HOM05D005531 ORTHO05D006332 1.7e-29 133.7 97 68.0
MD17G1177600 Malus domestica HOM05D005531 ORTHO05D006332 4.2e-28 129.0 86 75.6
QL93p1902_0765 Quercus lobata HOM05D005531 ORTHO05D006332 7.2e-28 128.3 71 87.3
C07p46750 Brassica napus HOM05D005531 ORTHO05D006332 4.7e-27 125.6 103 64.1
QL10p054599 Quercus lobata HOM05D005531 ORTHO05D006332 1.8e-26 123.6 72 86.1
Sabra13G0104900 Salix brachista HOM05D001493 ORTHO05D006332 4.0e-26 122.5 75 82.7
Peaxi162Scf00568g00522 Petunia axillaris HOM05D005531 ORTHO05D006332 8.8e-26 121.3 93 67.7
MD17G1177500 Malus domestica HOM05D005531 ORTHO05D006332 7.5e-25 118.2 95 68.4
MCO14G121 Micromonas commoda HOM05D005531 ORTHO05D006332 3.7e-24 115.9 179 37.4
Nitab4.5_0005427g0050 Nicotiana tabacum HOM05D005531 ORTHO05D006332 3.7e-24 115.9 93 69.9
Cpa.g.sc9.358 Carica papaya HOM05D005531 ORTHO05D006332 3.1e-23 112.8 59 94.9
Ah.14g081000 Amaranthus hybridus HOM05D005531 ORTHO05D006332 7.0e-23 111.7 85 68.2
CBR_g41469 Chara braunii HOM05D000019 ORTHO05D009492 7.0e-23 111.7 87 59.8
Nitab4.5_0005427g0020 Nicotiana tabacum HOM05D005531 ORTHO05D006332 5.9e-22 108.6 67 82.1
VMungo0251G0293 Vigna mungo HOM05D005531 ORTHO05D006332 3.2e-20 102.8 85 63.5
CARHR161690 Cardamine hirsuta HOM05D005531 ORTHO05D006332 3.6e-19 99.4 61 78.7
PSO017G1590 Papaver somniferum HOM05D005531 ORTHO05D006332 3.0e-18 96.3 78 60.3
PRCOL_00004663 Prasinoderma coloniale HOM05D005531 ORTHO05D006332 4.3e-12 75.9 164 31.1
Solyc03g062930.3 Solanum lycopersicum HOM05D005531 ORTHO05D006332 3.0e-10 69.7 37 89.2
MELO3C008115.2 Cucumis melo HOM05D005981 ORTHO05D007551 1.7e-08 63.9 101 34.7
CsaV3_2G033430 Cucumis sativus L. HOM05D005981 ORTHO05D007551 1.7e-08 63.9 101 35.6
Os01g0874800 Oryza sativa ssp. japonica HOM05D005981 ORTHO05D007551 2.2e-08 63.5 91 37.4
Oeu021010.1 Olea europaea HOM05D005981 ORTHO05D007551 4.9e-08 62.4 103 30.1
Aqoxy5G02601 Aquilegia oxysepala HOM05D005981 ORTHO05D007551 8.3e-08 61.6 99 33.3
Ca_14000_v3 Cicer arietinum L. HOM05D005981 ORTHO05D007551 8.3e-08 61.6 100 34.0
arahy.Tifrunner.gnm1.ann1.SEU8EV Arachis hypogaea HOM05D005981 ORTHO05D007551 1.1e-07 61.2 103 32.0
arahy.Tifrunner.gnm1.ann1.VB64T6 Arachis hypogaea HOM05D005981 ORTHO05D007551 1.1e-07 61.2 103 32.0
Psat1g098600 Pisum sativum HOM05D005981 ORTHO05D007551 1.8e-07 60.5 103 32.0
ClCG11G008230 Citrullus lanatus HOM05D005981 ORTHO05D007551 2.4e-07 60.1 101 32.7
Glyma.16G156300 Glycine max HOM05D005981 ORTHO05D007551 2.4e-07 60.1 103 33.0
BcaC08g43776 Brassica carinata HOM05D005981 ORTHO05D007551 3.2e-07 59.7 115 32.2
C06p11540 Brassica napus HOM05D005981 ORTHO05D007551 3.2e-07 59.7 115 33.0
BolC6t36287H Brassica oleracea HOM05D005981 ORTHO05D007551 3.2e-07 59.7 115 32.2
Haze_01368 Corylus avellana HOM05D005531 ORTHO05D006332 3.2e-07 59.7 89 43.8
EL10Ac1g00070 Beta vulgaris HOM05D005981 ORTHO05D007551 4.1e-07 59.3 118 35.6
Lsat_1_v5_gn_1_10481 Lactuca sativa HOM05D005981 ORTHO05D007551 4.1e-07 59.3 96 30.2
Medtr6g033525 Medicago truncatula HOM05D005981 ORTHO05D007551 4.1e-07 59.3 102 32.4
THA.LOC104806782 Tarenaya hassleriana HOM05D005981 ORTHO05D007551 4.1e-07 59.3 94 35.1
A09p32090 Brassica napus HOM05D005981 ORTHO05D007551 5.4e-07 58.9 115 32.2
BraA09t38748Z Brassica rapa HOM05D005981 ORTHO05D007551 5.4e-07 58.9 115 32.2
BcaB07g33127 Brassica carinata HOM05D005981 ORTHO05D007551 7.0e-07 58.5 115 32.2
SHI30281 Sapria himalayana HOM05D005531 ORTHO05D006332 7.0e-07 58.5 85 43.5
Phvul.004G084494 Phaseolus vulgaris HOM05D005981 ORTHO05D007551 9.2e-07 58.2 102 33.3
AL1G48940 Arabidopsis lyrata HOM05D005981 ORTHO05D007551 1.2e-06 57.8 115 32.2
Thhalv10008072m.g Eutrema salsugineum HOM05D005981 ORTHO05D007551 1.2e-06 57.8 115 33.0
Sed0004103 Sechium edule HOM05D005981 ORTHO05D007551 1.2e-06 57.8 96 33.3
TPR.G36660 Trifolium pratense HOM05D005981 ORTHO05D007551 1.6e-06 57.4 97 33.0
AT1G34380 Arabidopsis thaliana HOM05D005981 ORTHO05D007551 2.0e-06 57.0 115 31.3
Carub.0001s3253 Capsella rubella HOM05D005981 ORTHO05D007551 2.0e-06 57.0 115 31.3
Migut.C01243 Erythranthe guttata HOM05D005981 ORTHO05D007551 2.0e-06 57.0 99 32.3
Sp1g29600 Schrenkiella parvula HOM05D005981 ORTHO05D007551 2.0e-06 57.0 115 32.2
Zm00001eb146190 Zea mays HOM05D005981 ORTHO05D007551 2.0e-06 57.0 91 35.2
CANSAT56G4197 Cannabis sativa HOM05D005981 ORTHO05D007551 2.7e-06 56.6 92 32.6
CARHR033840 Cardamine hirsuta HOM05D005981 ORTHO05D007551 2.7e-06 56.6 115 32.2
AUR62023576 Chenopodium quinoa HOM05D005981 ORTHO05D007551 2.7e-06 56.6 102 34.3
Lj2g0016315 Lotus japonicus HOM05D005981 ORTHO05D007551 2.7e-06 56.6 103 32.0
PGR119G0141 Punica granatum HOM05D005981 ORTHO05D007551 2.7e-06 56.6 103 31.1
HPP92_000088 Vanilla planifolia HOM05D005981 ORTHO05D007551 2.7e-06 56.6 101 35.6
PSO017G5512 Papaver somniferum HOM05D005981 ORTHO05D007551 3.5e-06 56.2 121 28.1
RcHm_v2.0_Chr6g0272141 Rosa chinensis HOM05D005981 ORTHO05D007551 3.5e-06 56.2 93 35.5
SMO308G0008 Selaginella moellendorffii HOM05D005981 ORTHO05D007551 3.5e-06 56.2 96 37.5
Hund27079 Selenicereus undatus HOM05D005981 ORTHO05D007551 3.5e-06 56.2 104 33.7
Aa31LG6G8450 Aethionema arabicum HOM05D005981 ORTHO05D007551 4.6e-06 55.8 89 34.8
AUR62004659 Chenopodium quinoa HOM05D005981 ORTHO05D007551 5.9e-06 55.5 96 34.4
Pp3c1_23520 Physcomitrium patens HOM05D005981 ORTHO05D007551 5.9e-06 55.5 104 31.7
Prupe.8G055700 Prunus persica HOM05D005981 ORTHO05D007551 5.9e-06 55.5 93 33.3
SGA_v2.0_scaffold118G32466 Striga asiatica HOM05D005981 ORTHO05D007551 5.9e-06 55.5 96 30.2
Eucgr.F04135 Eucalyptus grandis HOM05D005981 ORTHO05D007551 7.8e-06 55.1 115 31.3
MD10G1046800 Malus domestica HOM05D005981 ORTHO05D007551 7.8e-06 55.1 92 35.9
Manes.18G100000 Manihot esculenta HOM05D005981 ORTHO05D007551 7.8e-06 55.1 96 32.3
Sc23g0001130 Simmondsia chinensis HOM05D005981 ORTHO05D007551 7.8e-06 55.1 115 31.3
Solyc11g017230.2 Solanum lycopersicum HOM05D005981 ORTHO05D007551 7.8e-06 55.1 103 30.1
Sopen11g009130 Solanum pennellii HOM05D005981 ORTHO05D007551 7.8e-06 55.1 103 30.1
Thecc.08G202800 Theobroma cacao HOM05D005981 ORTHO05D007551 7.8e-06 55.1 94 33.0


User provided reference genes

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