Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025050 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 8.9e-207 723.4 372 100.0
CSS0024885 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 4.9e-197 691.0 396 91.9
Actinidia12791 Actinidia chinensis HOM05D004008 ORTHO05D005383 1.0e-165 587.0 369 83.5
Rhsim06G0054400 Rhododendron simsii HOM05D004008 ORTHO05D005383 1.6e-163 579.7 374 83.2
Dinv19616 Davidia involucrata HOM05D004008 ORTHO05D005383 1.8e-162 576.2 369 82.4
Dinv42507 Davidia involucrata HOM05D004008 ORTHO05D005383 1.3e-160 570.1 373 80.4
Hma1.2p1_0637F.1_g193530 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 2.1e-160 569.3 370 80.8
vmacro11667 Vaccinium macrocarpon HOM05D004008 ORTHO05D005383 3.2e-156 555.4 458 67.9
TAR626G0539 Trochodendron aralioides HOM05D004008 ORTHO05D005383 2.7e-155 552.4 365 79.2
TAR626G1776 Trochodendron aralioides HOM05D004008 ORTHO05D005383 2.7e-155 552.4 365 79.2
Oeu052004.1 Olea europaea HOM05D004008 ORTHO05D005383 1.3e-154 550.1 369 78.6
Haze_11762 Corylus avellana HOM05D004008 ORTHO05D005383 1.9e-153 546.2 377 79.3
Lsat_1_v5_gn_7_112100 Lactuca sativa HOM05D004008 ORTHO05D005383 4.3e-153 545.0 361 78.9
Cfa008746 Carpinus fangiana HOM05D004008 ORTHO05D005383 9.7e-153 543.9 377 79.0
Hma1.2p1_0334F.1_g128730 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 4.8e-152 541.6 376 77.9
Lj1A905T43 Lonicera japonica HOM05D004008 ORTHO05D005383 1.4e-151 540.0 369 78.3
Peaxi162Scf00452g00831 Petunia axillaris HOM05D004008 ORTHO05D005383 1.4e-151 540.0 369 76.7
Nitab4.5_0001749g0010 Nicotiana tabacum HOM05D004008 ORTHO05D005383 1.8e-151 539.7 352 77.8
Manes.11G103000 Manihot esculenta HOM05D004008 ORTHO05D005383 6.9e-151 537.7 374 77.3
Cc05_g16090 Coffea canephora HOM05D004008 ORTHO05D005383 1.5e-150 536.6 376 77.1
arahy.Tifrunner.gnm1.ann1.416KLQ Arachis hypogaea HOM05D004008 ORTHO05D005383 2.0e-150 536.2 356 80.1
CiPaw.01G129500 Carya illinoinensis HOM05D004008 ORTHO05D005383 2.6e-150 535.8 348 82.8
CANSAT78G1304 Cannabis sativa HOM05D004008 ORTHO05D005383 3.4e-150 535.4 367 79.0
GSVIVG01002505001 Vitis vinifera HOM05D004008 ORTHO05D005383 5.9e-150 534.6 321 86.3
Nitab4.5_0001791g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 1.3e-149 533.5 365 77.5
Sopen07g034650 Solanum pennellii HOM05D004008 ORTHO05D005383 1.3e-149 533.5 369 75.6
Cpa.g.sc43.43 Carica papaya HOM05D004008 ORTHO05D005383 2.9e-149 532.3 375 76.5
Solyc07g066470.3 Solanum lycopersicum HOM05D004008 ORTHO05D005383 2.9e-149 532.3 369 75.3
Nitab4.5_0000134g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 3.8e-149 531.9 341 81.2
arahy.Tifrunner.gnm1.ann1.KXDS8S Arachis hypogaea HOM05D004008 ORTHO05D005383 8.5e-149 530.8 356 79.8
Peaxi162Scf00006g00139 Petunia axillaris HOM05D004008 ORTHO05D005383 8.5e-149 530.8 389 74.0
Potri.007G072500 Populus trichocarpa HOM05D004008 ORTHO05D005383 1.1e-148 530.4 342 81.3
TWI75G1091 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 1.9e-148 529.6 340 81.2
PGSC0003DMG400022126 Solanum tuberosum HOM05D004008 ORTHO05D005383 2.5e-148 529.3 369 75.1
MSTRG.13067 Avicennia marina HOM05D004008 ORTHO05D005383 5.5e-148 528.1 366 75.1
MSTRG.14544 Avicennia marina HOM05D004008 ORTHO05D005383 7.2e-148 527.7 366 75.7
VMungo1215G1012 Vigna mungo HOM05D004008 ORTHO05D005383 7.2e-148 527.7 352 79.8
SalBow8G2118 Salvia bowleyana HOM05D004008 ORTHO05D005383 9.4e-148 527.3 359 76.3
QL12p007515 Quercus lobata HOM05D004008 ORTHO05D005383 1.2e-147 526.9 333 83.5
Glyma.12G021100 Glycine max HOM05D004008 ORTHO05D005383 2.1e-147 526.2 318 85.2
Prupe.1G348400 Prunus persica HOM05D004008 ORTHO05D005383 2.1e-147 526.2 377 76.4
Glyma.01G227400 Glycine max HOM05D004008 ORTHO05D005383 3.6e-147 525.4 351 78.6
CAN.G943.40 Capsicum annuum HOM05D004008 ORTHO05D005383 4.6e-147 525.0 369 75.1
Phvul.002G034500 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 6.1e-147 524.6 352 78.4
Glyma.11G094700 Glycine max HOM05D004008 ORTHO05D005383 3.0e-146 522.3 318 84.6
MD13G1004100 Malus domestica HOM05D004008 ORTHO05D005383 3.0e-146 522.3 368 75.5
unitig_21.g20251 Utricularia gibba HOM05D004008 ORTHO05D005383 3.9e-146 521.9 370 74.6
TWI12G0055 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 6.7e-146 521.2 339 80.8
Lalb_Chr09g0320431 Lupinus albus HOM05D004008 ORTHO05D005383 2.0e-145 519.6 363 75.8
Potri.005G091600 Populus trichocarpa HOM05D004008 ORTHO05D005383 2.0e-145 519.6 342 79.8
CsaV3_3G031800 Cucumis sativus L. HOM05D004008 ORTHO05D005383 3.3e-145 518.8 355 77.2
Ca_26057_v3 Cicer arietinum L. HOM05D004008 ORTHO05D005383 4.4e-145 518.5 356 77.2
Gohir.A03G165100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 5.7e-145 518.1 359 76.9
Nitab4.5_0001080g0030 Nicotiana tabacum HOM05D004008 ORTHO05D005383 5.7e-145 518.1 385 70.9
Medtr4g076600 Medicago truncatula HOM05D004008 ORTHO05D005383 1.3e-144 516.9 318 83.3
HanXRQChr01g0007731 Helianthus annuus HOM05D004008 ORTHO05D005383 1.7e-144 516.5 336 80.7
Sed0006741 Sechium edule HOM05D004008 ORTHO05D005383 1.7e-144 516.5 356 77.0
MD16G1003400 Malus domestica HOM05D004008 ORTHO05D005383 2.2e-144 516.2 348 78.7
Gohir.D02G188300 Gossypium hirsutum HOM05D004008 ORTHO05D005383 3.7e-144 515.4 376 74.5
LjContig00222g0009052 Lotus japonicus HOM05D004008 ORTHO05D005383 3.7e-144 515.4 340 80.0
Gorai.005G211000 Gossypium raimondii HOM05D004008 ORTHO05D005383 4.8e-144 515.0 376 74.5
SGA_v2.0_scaffold186G40215 Striga asiatica HOM05D004008 ORTHO05D005383 6.3e-144 514.6 387 71.3
Aqoxy6G00207 Aquilegia oxysepala HOM05D004008 ORTHO05D005383 8.2e-144 514.2 335 80.0
Eucgr.C00142 Eucalyptus grandis HOM05D004008 ORTHO05D005383 1.1e-143 513.8 355 76.3
Ciclev10031858m.g Citrus clementina HOM05D004008 ORTHO05D005383 1.4e-143 513.5 371 74.4
Duzib132G0865 Durio zibethinus HOM05D004008 ORTHO05D005383 1.4e-143 513.5 369 75.1
RcHm_v2.0_Chr4g0446801 Rosa chinensis HOM05D004008 ORTHO05D005383 2.4e-143 512.7 346 78.3
arahy.Tifrunner.gnm1.ann1.6Z73IP Arachis hypogaea HOM05D004008 ORTHO05D005383 3.1e-143 512.3 352 76.4
Phvul.011G177100 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 4.1e-143 511.9 319 83.4
ClCG10G012060 Citrullus lanatus HOM05D004008 ORTHO05D005383 5.3e-143 511.5 362 76.8
HanXRQChr05g0153591 Helianthus annuus HOM05D004008 ORTHO05D005383 5.3e-143 511.5 366 74.6
PGR142G0362 Punica granatum HOM05D004008 ORTHO05D005383 2.0e-142 509.6 347 76.7
Sc10g0004580 Simmondsia chinensis HOM05D004008 ORTHO05D005383 2.0e-142 509.6 332 78.9
Thecc.02G158900 Theobroma cacao HOM05D004008 ORTHO05D005383 2.0e-142 509.6 346 78.0
Psat7g172760 Pisum sativum HOM05D004008 ORTHO05D005383 2.6e-142 509.2 318 82.4
Migut.M01552 Erythranthe guttata HOM05D004008 ORTHO05D005383 3.4e-142 508.8 351 76.1
MBI18_g03839_MAGBIO Magnolia biondii HOM05D004008 ORTHO05D005383 5.9e-142 508.1 372 74.5
TPR.G11683 Trifolium pratense HOM05D004008 ORTHO05D005383 7.7e-142 507.7 356 75.3
ECA248G2166 Erigeron canadensis HOM05D004008 ORTHO05D005383 1.0e-141 507.3 316 82.3
EL10Ac2g02758 Beta vulgaris HOM05D004008 ORTHO05D005383 2.2e-141 506.1 326 78.8
Ah.10g029970 Amaranthus hybridus HOM05D004008 ORTHO05D005383 8.5e-141 504.2 336 78.0
HPP92_002271 Vanilla planifolia HOM05D004008 ORTHO05D005383 1.1e-140 503.8 333 78.7
VMungo1127G2017 Vigna mungo HOM05D004008 ORTHO05D005383 1.1e-140 503.8 318 82.1
COL.COLO4_33043 Corchorus olitorius HOM05D004008 ORTHO05D005383 1.4e-140 503.4 384 72.1
THA.LOC104800860 Tarenaya hassleriana HOM05D004008 ORTHO05D005383 1.9e-140 503.1 365 75.6
ATR0763G059 Amborella trichopoda HOM05D004008 ORTHO05D005383 3.2e-140 502.3 347 76.9
Hund13394 Selenicereus undatus HOM05D004008 ORTHO05D005383 5.5e-140 501.5 326 78.2
AT5G08280 Arabidopsis thaliana HOM05D004008 ORTHO05D005383 1.6e-139 500.0 357 74.5
Migut.H01689 Erythranthe guttata HOM05D004008 ORTHO05D005383 2.1e-139 499.6 373 72.1
Duzib248G1235 Durio zibethinus HOM05D004008 ORTHO05D005383 2.7e-139 499.2 372 73.1
Aa31LG3G18290 Aethionema arabicum HOM05D004008 ORTHO05D005383 3.6e-139 498.8 356 75.3
AL6G18680 Arabidopsis lyrata HOM05D004008 ORTHO05D005383 6.1e-139 498.0 357 75.1
FAN07G1552 Fragaria x ananassa HOM05D004008 ORTHO05D005383 6.1e-139 498.0 343 76.4
RcHm_v2.0_Chr1g0330101 Rosa chinensis HOM05D004008 ORTHO05D005383 7.9e-139 497.7 363 73.6
CARHR204850 Cardamine hirsuta HOM05D004008 ORTHO05D005383 1.0e-138 497.3 357 75.1
Gorai.012G134300 Gossypium raimondii HOM05D004008 ORTHO05D005383 1.4e-138 496.9 346 76.0
C02p03470 Brassica napus HOM05D004008 ORTHO05D005383 1.8e-138 496.5 354 74.9
Thhalv10013814m.g Eutrema salsugineum HOM05D004008 ORTHO05D005383 1.8e-138 496.5 357 74.5
FAN12G0417 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.8e-138 496.5 343 75.8
Carub.0006s0716 Capsella rubella HOM05D004008 ORTHO05D005383 2.3e-138 496.1 357 75.1
CDE05G3126 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 2.3e-138 496.1 367 73.8
Sabra07G0061100 Salix brachista HOM05D004008 ORTHO05D005383 3.0e-138 495.7 420 66.2
C09p68660 Brassica napus HOM05D004008 ORTHO05D005383 2.0e-137 493.0 347 76.7
BraA02t04947Z Brassica rapa HOM05D004008 ORTHO05D005383 2.0e-137 493.0 354 73.7
Sp6g34680 Schrenkiella parvula HOM05D004008 ORTHO05D005383 2.0e-137 493.0 347 75.5
PSO541G2232 Papaver somniferum HOM05D004008 ORTHO05D005383 3.3e-137 492.3 363 71.3
A10p28400 Brassica napus HOM05D004008 ORTHO05D005383 4.4e-137 491.9 347 76.4
BraA10t44887Z Brassica rapa HOM05D004008 ORTHO05D005383 4.4e-137 491.9 347 76.4
FAN03G0704 Fragaria x ananassa HOM05D004008 ORTHO05D005383 4.4e-137 491.9 370 71.1
BcaB01g05618 Brassica carinata HOM05D004008 ORTHO05D005383 5.7e-137 491.5 347 75.8
BolC3t12952H Brassica oleracea HOM05D004008 ORTHO05D005383 5.7e-137 491.5 347 75.8
C03p04200 Brassica napus HOM05D004008 ORTHO05D005383 7.4e-137 491.1 347 75.8
BolC9t59612H Brassica oleracea HOM05D004008 ORTHO05D005383 7.4e-137 491.1 347 76.7
AUR62031735 Chenopodium quinoa HOM05D004008 ORTHO05D005383 7.4e-137 491.1 346 72.8
FvH4_7g04700 Fragaria vesca HOM05D004008 ORTHO05D005383 1.3e-136 490.3 360 72.5
FAN10G2193 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.3e-136 490.3 360 72.5
BcaNung05097 Brassica carinata HOM05D004008 ORTHO05D005383 1.7e-136 490.0 347 75.5
PSO675G0755 Papaver somniferum HOM05D004008 ORTHO05D005383 1.7e-136 490.0 363 71.1
CDE11G0020 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 2.2e-136 489.6 367 72.8
A03p03710 Brassica napus HOM05D004008 ORTHO05D005383 3.7e-136 488.8 347 76.4
BraA03t09719Z Brassica rapa HOM05D004008 ORTHO05D005383 3.7e-136 488.8 347 76.4
BolC2t06308H Brassica oleracea HOM05D004008 ORTHO05D005383 4.8e-136 488.4 354 73.2
DCAR_013737 Daucus carota HOM05D004008 ORTHO05D005383 4.8e-136 488.4 344 76.7
AUR62032620 Chenopodium quinoa HOM05D004008 ORTHO05D005383 6.3e-136 488.0 351 71.8
Gohir.A04G108500 Gossypium hirsutum HOM05D004008 ORTHO05D005383 1.8e-135 486.5 345 75.1
Lj4g0025599 Lotus japonicus HOM05D004008 ORTHO05D005383 2.0e-134 483.0 352 73.6
Sabra05G0076100 Salix brachista HOM05D004008 ORTHO05D005383 5.9e-134 481.5 406 66.3
CDE02G2123 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 5.0e-133 478.4 320 77.2
TAR624G0715 Trochodendron aralioides HOM05D004008 ORTHO05D005383 2.5e-132 476.1 330 77.9
FAN06G1123 Fragaria x ananassa HOM05D004008 ORTHO05D005383 9.4e-132 474.2 360 71.1
FAN06G2867 Fragaria x ananassa HOM05D004008 ORTHO05D005383 9.4e-132 474.2 360 71.1
SGA_v2.0_scaffold7G03592 Striga asiatica HOM05D004008 ORTHO05D005383 1.6e-131 473.4 370 69.2
FAN17G0554 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.8e-130 469.9 295 80.7
MELO3C024010.2 Cucumis melo HOM05D004008 ORTHO05D005383 3.7e-128 462.2 279 83.9
Zm00001eb207370 Zea mays HOM05D004008 ORTHO05D005383 6.3e-128 461.5 328 72.6
Os02g0168800 Oryza sativa ssp. japonica HOM05D004008 ORTHO05D005383 1.8e-127 459.9 331 71.9
BcaB08g37268 Brassica carinata HOM05D004008 ORTHO05D005383 8.5e-125 451.1 347 72.0
Gohir.D04G148100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 1.1e-124 450.7 279 82.8
BcaC03g13214 Brassica carinata HOM05D004008 ORTHO05D005383 8.8e-122 441.0 354 68.1
Pp3c6_15990 Physcomitrium patens HOM05D004008 ORTHO05D005383 7.5e-121 438.0 350 67.7
SEGI_21965 Sequoiadendron giganteum HOM05D004008 ORTHO05D005383 1.3e-120 437.2 294 76.2
Pp3c5_16770 Physcomitrium patens HOM05D004008 ORTHO05D005383 2.2e-120 436.4 323 69.7
Mapoly0015s0060 Marchantia polymorpha HOM05D004008 ORTHO05D005383 3.7e-120 435.6 327 68.8
Pp3c15_6300 Physcomitrium patens HOM05D004008 ORTHO05D005383 8.3e-120 434.5 309 72.5
SMO364G0819 Selaginella moellendorffii HOM05D004008 ORTHO05D005383 5.4e-119 431.8 338 68.3
CBR_g48425 Chara braunii HOM05D004008 ORTHO05D005383 7.7e-118 427.9 333 67.9
Zm00001eb233020 Zea mays HOM05D004008 ORTHO05D005383 2.9e-117 426.0 294 73.5
Oeu001944.1 Olea europaea HOM05D004008 ORTHO05D005383 4.4e-105 385.6 256 80.9
Cre16.g663900 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D005383 1.8e-103 380.2 297 66.3
Sed0020742 Sechium edule HOM05D004008 ORTHO05D005383 6.6e-101 371.7 250 77.6
MCO01G747 Micromonas commoda HOM05D004008 ORTHO05D005383 5.6e-100 368.6 317 62.1
FvH4_4g37020 Fragaria vesca HOM05D004008 ORTHO05D005383 1.4e-95 354.0 254 75.2
PRCOL_00005560 Prasinoderma coloniale HOM05D004008 ORTHO05D005383 1.9e-87 327.0 284 59.9
AagrBONN_evm.TU.Sc2ySwM_117.3714 Anthoceros agrestis HOM05D004008 ORTHO05D005383 7.3e-84 315.1 270 65.9
Actinidia07354 Actinidia chinensis HOM05D004008 ORTHO05D005383 1.2e-83 314.3 357 54.9
Psat5g025240 Pisum sativum HOM05D004008 ORTHO05D005383 1.5e-81 307.4 297 60.3
Nn7g38125 Nelumbo nucifera HOM05D004008 ORTHO05D005383 7.3e-68 261.9 209 69.9
arahy.Tifrunner.gnm1.ann1.VI50KN Arachis hypogaea HOM05D004008 ORTHO05D005383 7.9e-62 241.9 195 69.2
Haze_26918 Corylus avellana HOM05D004008 ORTHO05D163716 8.7e-61 238.4 301 48.5
Glyma.11G015433 Glycine max HOM05D004008 ORTHO05D005383 1.8e-50 204.1 112 85.7
Psat5g278360 Pisum sativum HOM05D004008 ORTHO05D000002 6.7e-37 159.1 113 73.5
Cre02.g113850 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D145669 1.3e-32 144.8 378 31.7
C02p56520 Brassica napus HOM05D000109 ORTHO05D000210 6.5e-32 142.5 94 74.5
BcaC08g43816 Brassica carinata HOM05D004008 ORTHO05D013026 1.1e-31 141.7 96 71.9
BcaC07g39332 Brassica carinata HOM05D004008 ORTHO05D032875 1.4e-31 141.4 170 55.3
C08p23470 Brassica napus HOM05D004008 ORTHO05D032875 1.9e-31 141.0 184 52.7
BolC8t49976H Brassica oleracea HOM05D004008 ORTHO05D032875 1.9e-31 141.0 184 52.7
BcaC04g20718 Brassica carinata HOM05D004008 ORTHO05D027220 7.2e-31 139.0 94 73.4
C09p39940 Brassica napus HOM05D004008 ORTHO05D027220 7.2e-31 139.0 94 73.4
C03p57930 Brassica napus HOM05D004008 ORTHO05D027220 4.7e-30 136.3 94 72.3
BolC9t56891H Brassica oleracea HOM05D004008 ORTHO05D013026 3.9e-29 133.3 98 68.4
BcaC03g17816 Brassica carinata HOM05D003055 ORTHO05D013026 1.3e-27 128.3 99 63.6
C02p58390 Brassica napus HOM05D003055 ORTHO05D013026 1.8e-26 124.4 98 63.3
BolC3t18065H Brassica oleracea HOM05D003055 ORTHO05D013026 9.7e-20 102.1 64 75.0
TPR.G13755 Trifolium pratense HOM05D004008 ORTHO05D410752 2.4e-18 97.4 67 77.6
Rhsim06G0151600 Rhododendron simsii HOM05D001371 ORTHO05D001319 7.0e-18 95.9 61 85.2
Psat6g163360 Pisum sativum HOM05D005575 ORTHO05D000484 2.3e-13 80.9 139 43.2


User provided reference genes

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