Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024885 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 3.0e-221 771.5 396 100.0
CSS0025050 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 1.2e-196 689.9 396 91.9
Actinidia12791 Actinidia chinensis HOM05D004008 ORTHO05D005383 7.3e-175 617.5 367 87.2
Rhsim06G0054400 Rhododendron simsii HOM05D004008 ORTHO05D005383 1.2e-172 610.1 369 87.3
Dinv19616 Davidia involucrata HOM05D004008 ORTHO05D005383 3.8e-171 605.1 364 86.5
Dinv42507 Davidia involucrata HOM05D004008 ORTHO05D005383 9.3e-170 600.5 368 84.8
Hma1.2p1_0637F.1_g193530 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 2.7e-169 599.0 368 84.0
TAR626G0539 Trochodendron aralioides HOM05D004008 ORTHO05D005383 3.1e-165 585.5 366 82.0
TAR626G1776 Trochodendron aralioides HOM05D004008 ORTHO05D005383 3.1e-165 585.5 366 82.0
Oeu052004.1 Olea europaea HOM05D004008 ORTHO05D005383 3.4e-164 582.0 367 82.6
vmacro11667 Vaccinium macrocarpon HOM05D004008 ORTHO05D005383 4.5e-164 581.6 454 70.5
Haze_11762 Corylus avellana HOM05D004008 ORTHO05D005383 9.9e-164 580.5 372 83.9
Lsat_1_v5_gn_7_112100 Lactuca sativa HOM05D004008 ORTHO05D005383 2.9e-163 578.9 362 82.3
Cfa008746 Carpinus fangiana HOM05D004008 ORTHO05D005383 4.9e-163 578.2 372 83.6
Hma1.2p1_0334F.1_g128730 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 3.2e-162 575.5 374 82.4
Peaxi162Scf00452g00831 Petunia axillaris HOM05D004008 ORTHO05D005383 9.3e-162 573.9 351 83.2
CiPaw.01G129500 Carya illinoinensis HOM05D004008 ORTHO05D005383 2.1e-161 572.8 343 87.8
Cc05_g16090 Coffea canephora HOM05D004008 ORTHO05D005383 7.9e-161 570.9 347 85.0
arahy.Tifrunner.gnm1.ann1.416KLQ Arachis hypogaea HOM05D004008 ORTHO05D005383 1.3e-160 570.1 357 83.8
GSVIVG01002505001 Vitis vinifera HOM05D004008 ORTHO05D005383 2.3e-160 569.3 322 90.1
Nitab4.5_0001791g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 3.0e-160 568.9 366 81.4
CANSAT78G1304 Cannabis sativa HOM05D004008 ORTHO05D005383 3.9e-160 568.5 368 82.3
Lj1A905T43 Lonicera japonica HOM05D004008 ORTHO05D005383 3.9e-160 568.5 367 81.5
Manes.11G103000 Manihot esculenta HOM05D004008 ORTHO05D005383 3.9e-160 568.5 348 84.5
Nitab4.5_0001749g0010 Nicotiana tabacum HOM05D004008 ORTHO05D005383 1.5e-159 566.6 350 81.4
Nitab4.5_0000134g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 1.9e-159 566.2 342 85.1
Sopen07g034650 Solanum pennellii HOM05D004008 ORTHO05D005383 1.9e-159 566.2 351 81.8
Solyc07g066470.3 Solanum lycopersicum HOM05D004008 ORTHO05D005383 4.3e-159 565.1 351 81.5
arahy.Tifrunner.gnm1.ann1.KXDS8S Arachis hypogaea HOM05D004008 ORTHO05D005383 5.6e-159 564.7 357 83.5
MSTRG.13067 Avicennia marina HOM05D004008 ORTHO05D005383 7.4e-159 564.3 367 79.3
TWI75G1091 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 7.4e-159 564.3 341 85.3
Peaxi162Scf00006g00139 Petunia axillaris HOM05D004008 ORTHO05D005383 9.6e-159 563.9 369 79.9
VMungo1215G1012 Vigna mungo HOM05D004008 ORTHO05D005383 2.1e-158 562.8 353 83.6
Potri.007G072500 Populus trichocarpa HOM05D004008 ORTHO05D005383 2.8e-158 562.4 343 84.8
SalBow8G2118 Salvia bowleyana HOM05D004008 ORTHO05D005383 2.8e-158 562.4 360 80.0
Cpa.g.sc43.43 Carica papaya HOM05D004008 ORTHO05D005383 3.7e-158 562.0 347 84.1
PGSC0003DMG400022126 Solanum tuberosum HOM05D004008 ORTHO05D005383 3.7e-158 562.0 351 81.2
MSTRG.14544 Avicennia marina HOM05D004008 ORTHO05D005383 4.8e-158 561.6 367 79.3
Prupe.1G348400 Prunus persica HOM05D004008 ORTHO05D005383 4.8e-158 561.6 349 84.2
QL12p007515 Quercus lobata HOM05D004008 ORTHO05D005383 6.2e-158 561.2 334 87.4
Glyma.12G021100 Glycine max HOM05D004008 ORTHO05D005383 8.1e-158 560.8 319 89.3
Phvul.002G034500 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 1.8e-157 559.7 353 82.2
Glyma.01G227400 Glycine max HOM05D004008 ORTHO05D005383 9.0e-157 557.4 352 81.8
Glyma.11G094700 Glycine max HOM05D004008 ORTHO05D005383 1.2e-156 557.0 319 88.7
TWI12G0055 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 1.2e-156 557.0 340 85.0
CAN.G943.40 Capsicum annuum HOM05D004008 ORTHO05D005383 1.5e-156 556.6 351 80.9
MD13G1004100 Malus domestica HOM05D004008 ORTHO05D005383 1.5e-156 556.6 359 81.1
unitig_21.g20251 Utricularia gibba HOM05D004008 ORTHO05D005383 2.6e-156 555.8 367 78.2
Potri.005G091600 Populus trichocarpa HOM05D004008 ORTHO05D005383 9.9e-156 553.9 343 83.7
Gohir.A03G165100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 1.3e-155 553.5 360 80.6
Ca_26057_v3 Cicer arietinum L. HOM05D004008 ORTHO05D005383 2.2e-155 552.7 357 81.0
CsaV3_3G031800 Cucumis sativus L. HOM05D004008 ORTHO05D005383 2.2e-155 552.7 356 80.6
HanXRQChr01g0007731 Helianthus annuus HOM05D004008 ORTHO05D005383 2.9e-155 552.4 337 84.6
Lalb_Chr09g0320431 Lupinus albus HOM05D004008 ORTHO05D005383 2.9e-155 552.4 364 79.1
LjContig00222g0009052 Lotus japonicus HOM05D004008 ORTHO05D005383 4.9e-155 551.6 341 84.2
Medtr4g076600 Medicago truncatula HOM05D004008 ORTHO05D005383 4.9e-155 551.6 319 87.5
MD16G1003400 Malus domestica HOM05D004008 ORTHO05D005383 8.4e-155 550.8 349 82.5
Gohir.D02G188300 Gossypium hirsutum HOM05D004008 ORTHO05D005383 1.1e-154 550.4 360 80.0
Sed0006741 Sechium edule HOM05D004008 ORTHO05D005383 1.1e-154 550.4 357 80.7
Gorai.005G211000 Gossypium raimondii HOM05D004008 ORTHO05D005383 1.4e-154 550.1 360 80.0
Nitab4.5_0001080g0030 Nicotiana tabacum HOM05D004008 ORTHO05D005383 1.4e-154 550.1 397 72.3
SGA_v2.0_scaffold186G40215 Striga asiatica HOM05D004008 ORTHO05D005383 1.4e-154 550.1 389 74.6
ECA248G2166 Erigeron canadensis HOM05D004008 ORTHO05D005383 3.2e-154 548.9 329 84.5
Aqoxy6G00207 Aquilegia oxysepala HOM05D004008 ORTHO05D005383 4.2e-154 548.5 336 83.9
Duzib132G0865 Durio zibethinus HOM05D004008 ORTHO05D005383 5.5e-154 548.1 370 78.4
arahy.Tifrunner.gnm1.ann1.6Z73IP Arachis hypogaea HOM05D004008 ORTHO05D005383 7.1e-154 547.7 353 80.2
ClCG10G012060 Citrullus lanatus HOM05D004008 ORTHO05D005383 1.2e-153 547.0 363 80.4
Ciclev10031858m.g Citrus clementina HOM05D004008 ORTHO05D005383 1.6e-153 546.6 364 79.1
Phvul.011G177100 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 2.1e-153 546.2 320 87.2
Eucgr.C00142 Eucalyptus grandis HOM05D004008 ORTHO05D005383 2.7e-153 545.8 356 79.8
RcHm_v2.0_Chr4g0446801 Rosa chinensis HOM05D004008 ORTHO05D005383 2.7e-153 545.8 347 82.1
Thecc.02G158900 Theobroma cacao HOM05D004008 ORTHO05D005383 3.5e-153 545.4 347 82.1
Migut.M01552 Erythranthe guttata HOM05D004008 ORTHO05D005383 6.0e-153 544.7 352 80.1
HanXRQChr05g0153591 Helianthus annuus HOM05D004008 ORTHO05D005383 6.0e-153 544.7 348 80.7
Psat7g172760 Pisum sativum HOM05D004008 ORTHO05D005383 1.0e-152 543.9 319 86.5
Sc10g0004580 Simmondsia chinensis HOM05D004008 ORTHO05D005383 5.1e-152 541.6 333 82.3
MBI18_g03839_MAGBIO Magnolia biondii HOM05D004008 ORTHO05D005383 8.7e-152 540.8 373 77.7
PGR142G0362 Punica granatum HOM05D004008 ORTHO05D005383 8.7e-152 540.8 348 79.9
Ah.10g029970 Amaranthus hybridus HOM05D004008 ORTHO05D005383 1.1e-151 540.4 337 82.2
TPR.G11683 Trifolium pratense HOM05D004008 ORTHO05D005383 1.5e-151 540.0 364 78.0
EL10Ac2g02758 Beta vulgaris HOM05D004008 ORTHO05D005383 2.5e-151 539.3 327 82.6
COL.COLO4_33043 Corchorus olitorius HOM05D004008 ORTHO05D005383 4.3e-151 538.5 385 75.6
VMungo1127G2017 Vigna mungo HOM05D004008 ORTHO05D005383 7.4e-151 537.7 329 84.2
ATR0763G059 Amborella trichopoda HOM05D004008 ORTHO05D005383 1.3e-150 537.0 348 80.5
Hund13394 Selenicereus undatus HOM05D004008 ORTHO05D005383 1.6e-150 536.6 327 82.6
THA.LOC104800860 Tarenaya hassleriana HOM05D004008 ORTHO05D005383 1.6e-150 536.6 366 79.2
HPP92_002271 Vanilla planifolia HOM05D004008 ORTHO05D005383 2.1e-150 536.2 335 81.5
AT5G08280 Arabidopsis thaliana HOM05D004008 ORTHO05D005383 4.8e-150 535.0 358 78.5
Migut.H01689 Erythranthe guttata HOM05D004008 ORTHO05D005383 8.2e-150 534.3 370 76.2
RcHm_v2.0_Chr1g0330101 Rosa chinensis HOM05D004008 ORTHO05D005383 8.2e-150 534.3 364 77.7
Aa31LG3G18290 Aethionema arabicum HOM05D004008 ORTHO05D005383 1.1e-149 533.9 357 79.3
Duzib248G1235 Durio zibethinus HOM05D004008 ORTHO05D005383 1.8e-149 533.1 370 76.5
AL6G18680 Arabidopsis lyrata HOM05D004008 ORTHO05D005383 2.4e-149 532.7 358 78.2
Gorai.012G134300 Gossypium raimondii HOM05D004008 ORTHO05D005383 3.1e-149 532.3 347 79.8
CARHR204850 Cardamine hirsuta HOM05D004008 ORTHO05D005383 4.0e-149 531.9 358 78.2
Thhalv10013814m.g Eutrema salsugineum HOM05D004008 ORTHO05D005383 5.3e-149 531.6 358 78.5
FAN07G1552 Fragaria x ananassa HOM05D004008 ORTHO05D005383 5.3e-149 531.6 344 80.2
C02p03470 Brassica napus HOM05D004008 ORTHO05D005383 6.9e-149 531.2 355 78.9
Carub.0006s0716 Capsella rubella HOM05D004008 ORTHO05D005383 1.2e-148 530.4 358 78.2
FAN12G0417 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.5e-148 530.0 344 79.7
CDE05G3126 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 2.0e-148 529.6 361 78.1
FAN03G0704 Fragaria x ananassa HOM05D004008 ORTHO05D005383 2.6e-148 529.3 386 73.1
BraA02t04947Z Brassica rapa HOM05D004008 ORTHO05D005383 7.6e-148 527.7 355 78.3
FvH4_7g04700 Fragaria vesca HOM05D004008 ORTHO05D005383 7.6e-148 527.7 361 76.7
FAN10G2193 Fragaria x ananassa HOM05D004008 ORTHO05D005383 7.6e-148 527.7 361 76.7
Sabra07G0061100 Salix brachista HOM05D004008 ORTHO05D005383 7.6e-148 527.7 421 69.1
Sp6g34680 Schrenkiella parvula HOM05D004008 ORTHO05D005383 7.6e-148 527.7 348 79.6
C09p68660 Brassica napus HOM05D004008 ORTHO05D005383 1.3e-147 526.9 348 80.5
A10p28400 Brassica napus HOM05D004008 ORTHO05D005383 1.7e-147 526.6 348 79.6
BraA10t44887Z Brassica rapa HOM05D004008 ORTHO05D005383 1.7e-147 526.6 348 79.6
BcaB01g05618 Brassica carinata HOM05D004008 ORTHO05D005383 2.2e-147 526.2 348 79.9
BolC3t12952H Brassica oleracea HOM05D004008 ORTHO05D005383 2.2e-147 526.2 348 79.9
C03p04200 Brassica napus HOM05D004008 ORTHO05D005383 2.9e-147 525.8 348 79.9
BolC9t59612H Brassica oleracea HOM05D004008 ORTHO05D005383 2.9e-147 525.8 348 79.9
PSO541G2232 Papaver somniferum HOM05D004008 ORTHO05D005383 3.8e-147 525.4 347 77.2
BcaNung05097 Brassica carinata HOM05D004008 ORTHO05D005383 6.5e-147 524.6 348 79.6
CDE11G0020 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 8.4e-147 524.2 384 73.7
AUR62031735 Chenopodium quinoa HOM05D004008 ORTHO05D005383 8.4e-147 524.2 347 76.4
BolC2t06308H Brassica oleracea HOM05D004008 ORTHO05D005383 1.9e-146 523.1 355 77.7
A03p03710 Brassica napus HOM05D004008 ORTHO05D005383 3.2e-146 522.3 348 80.2
BraA03t09719Z Brassica rapa HOM05D004008 ORTHO05D005383 3.2e-146 522.3 348 80.2
PSO675G0755 Papaver somniferum HOM05D004008 ORTHO05D005383 3.2e-146 522.3 347 76.7
AUR62032620 Chenopodium quinoa HOM05D004008 ORTHO05D005383 4.2e-146 521.9 352 75.6
Gohir.A04G108500 Gossypium hirsutum HOM05D004008 ORTHO05D005383 1.0e-144 517.3 346 78.6
Lj4g0025599 Lotus japonicus HOM05D004008 ORTHO05D005383 2.3e-144 516.2 353 77.1
Sabra05G0076100 Salix brachista HOM05D004008 ORTHO05D005383 3.0e-144 515.8 407 69.5
DCAR_013737 Daucus carota HOM05D004008 ORTHO05D005383 2.5e-143 512.7 341 79.8
CDE02G2123 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 5.7e-143 511.5 327 79.5
FAN06G1123 Fragaria x ananassa HOM05D004008 ORTHO05D005383 5.7e-143 511.5 361 75.3
FAN06G2867 Fragaria x ananassa HOM05D004008 ORTHO05D005383 5.7e-143 511.5 361 75.3
SGA_v2.0_scaffold7G03592 Striga asiatica HOM05D004008 ORTHO05D005383 6.3e-142 508.1 371 73.0
TAR624G0715 Trochodendron aralioides HOM05D004008 ORTHO05D005383 5.3e-141 505.0 326 81.3
FAN17G0554 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.2e-140 503.8 296 85.1
MELO3C024010.2 Cucumis melo HOM05D004008 ORTHO05D005383 8.5e-139 497.7 280 88.6
Zm00001eb207370 Zea mays HOM05D004008 ORTHO05D005383 5.1e-136 488.4 329 75.4
Gohir.D04G148100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 2.5e-135 486.1 280 87.5
BcaB08g37268 Brassica carinata HOM05D004008 ORTHO05D005383 4.3e-135 485.3 348 75.9
Os02g0168800 Oryza sativa ssp. japonica HOM05D004008 ORTHO05D005383 4.3e-135 485.3 332 74.4
BcaC03g13214 Brassica carinata HOM05D004008 ORTHO05D005383 3.4e-132 475.7 355 72.7
Pp3c5_16770 Physcomitrium patens HOM05D004008 ORTHO05D005383 3.8e-131 472.2 324 74.1
Mapoly0015s0060 Marchantia polymorpha HOM05D004008 ORTHO05D005383 4.2e-130 468.8 329 72.3
Pp3c15_6300 Physcomitrium patens HOM05D004008 ORTHO05D005383 4.2e-130 468.8 310 76.5
Pp3c6_15990 Physcomitrium patens HOM05D004008 ORTHO05D005383 4.2e-130 468.8 351 70.9
SMO364G0819 Selaginella moellendorffii HOM05D004008 ORTHO05D005383 7.9e-129 464.5 345 71.0
SEGI_21965 Sequoiadendron giganteum HOM05D004008 ORTHO05D005383 1.4e-128 463.8 295 79.3
CBR_g48425 Chara braunii HOM05D004008 ORTHO05D005383 8.8e-128 461.1 334 71.6
Zm00001eb233020 Zea mays HOM05D004008 ORTHO05D005383 4.8e-126 455.3 295 76.9
Oeu001944.1 Olea europaea HOM05D004008 ORTHO05D005383 2.5e-114 416.4 256 85.5
Cre16.g663900 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D005383 3.6e-113 412.5 297 70.7
Sed0020742 Sechium edule HOM05D004008 ORTHO05D005383 3.3e-111 406.0 250 83.2
MCO01G747 Micromonas commoda HOM05D004008 ORTHO05D005383 2.7e-108 396.4 317 65.3
FvH4_4g37020 Fragaria vesca HOM05D004008 ORTHO05D005383 2.7e-105 386.3 254 80.3
PRCOL_00005560 Prasinoderma coloniale HOM05D004008 ORTHO05D005383 2.1e-97 360.1 295 62.4
AagrBONN_evm.TU.Sc2ySwM_117.3714 Anthoceros agrestis HOM05D004008 ORTHO05D005383 2.4e-93 346.7 270 70.0
Actinidia07354 Actinidia chinensis HOM05D004008 ORTHO05D005383 1.5e-82 310.8 368 53.3
Psat5g025240 Pisum sativum HOM05D004008 ORTHO05D005383 8.9e-80 301.6 310 57.7
Nn7g38125 Nelumbo nucifera HOM05D004008 ORTHO05D005383 2.7e-76 290.0 210 74.8
arahy.Tifrunner.gnm1.ann1.VI50KN Arachis hypogaea HOM05D004008 ORTHO05D005383 1.5e-71 274.2 195 75.4
Haze_26918 Corylus avellana HOM05D004008 ORTHO05D163716 1.1e-66 258.1 304 50.7
Glyma.11G015433 Glycine max HOM05D004008 ORTHO05D005383 8.7e-51 205.3 112 86.6
Psat5g278360 Pisum sativum HOM05D004008 ORTHO05D000002 4.9e-46 189.5 113 84.1
BcaC07g39332 Brassica carinata HOM05D004008 ORTHO05D032875 2.4e-40 170.6 170 62.4
C08p23470 Brassica napus HOM05D004008 ORTHO05D032875 3.1e-40 170.2 184 59.2
BolC8t49976H Brassica oleracea HOM05D004008 ORTHO05D032875 3.1e-40 170.2 184 59.2
Cre02.g113850 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D145669 1.6e-33 147.9 323 33.1
C02p56520 Brassica napus HOM05D000109 ORTHO05D000210 8.2e-33 145.6 95 75.8
BcaC08g43816 Brassica carinata HOM05D004008 ORTHO05D013026 1.1e-32 145.2 97 73.2
BcaC04g20718 Brassica carinata HOM05D004008 ORTHO05D027220 9.0e-32 142.1 95 74.7
C09p39940 Brassica napus HOM05D004008 ORTHO05D027220 9.0e-32 142.1 95 74.7
C03p57930 Brassica napus HOM05D004008 ORTHO05D027220 5.8e-31 139.4 95 73.7
BolC9t56891H Brassica oleracea HOM05D004008 ORTHO05D013026 3.8e-30 136.7 99 69.7
BcaC03g17816 Brassica carinata HOM05D003055 ORTHO05D013026 1.2e-28 131.7 100 65.0
C02p58390 Brassica napus HOM05D003055 ORTHO05D013026 1.8e-27 127.9 99 64.6
BolC3t18065H Brassica oleracea HOM05D003055 ORTHO05D013026 4.6e-20 103.2 64 76.6
TPR.G13755 Trifolium pratense HOM05D004008 ORTHO05D410752 2.5e-18 97.4 67 77.6
Rhsim06G0151600 Rhododendron simsii HOM05D001371 ORTHO05D001319 7.4e-18 95.9 61 85.2
Psat6g163360 Pisum sativum HOM05D005575 ORTHO05D000484 4.1e-16 90.1 49 89.8
C05p24790 Brassica napus HOM05D003055 ORTHO05D013026 3.8e-06 57.0 31 80.6


User provided reference genes

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