Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024351 Camellia sinensis var. sinensis HOM05D004180 ORTHO05D005323 0.0e+00 1148.7 564 100.0
Rhsim12G0172100 Rhododendron simsii HOM05D004180 ORTHO05D005323 0.0e+00 1114.4 564 96.5
Cc04_g10350 Coffea canephora HOM05D004180 ORTHO05D005323 0.0e+00 1102.4 564 95.6
Manes.06G115200 Manihot esculenta HOM05D004180 ORTHO05D005323 0.0e+00 1099.7 562 94.5
Atru.chr9.1011 Acer truncatum HOM05D004180 ORTHO05D005323 0.0e+00 1097.4 564 94.1
Oeu037582.1 Olea europaea HOM05D004180 ORTHO05D005323 0.0e+00 1095.9 564 94.3
Gohir.D11G038900 Gossypium hirsutum HOM05D004180 ORTHO05D005323 0.0e+00 1094.7 565 94.5
Hund05645 Selenicereus undatus HOM05D004180 ORTHO05D005323 0.0e+00 1094.0 564 94.0
COL.COLO4_09266 Corchorus olitorius HOM05D004180 ORTHO05D005323 0.0e+00 1092.8 565 94.3
CiPaw.12G035600 Carya illinoinensis HOM05D004180 ORTHO05D005323 0.0e+00 1092.4 562 94.5
Duzib084G0269 Durio zibethinus HOM05D004180 ORTHO05D005323 0.0e+00 1091.6 565 94.2
Gohir.A11G035300 Gossypium hirsutum HOM05D004180 ORTHO05D005323 0.0e+00 1090.9 565 94.3
Hma1.2p1_0046F.1_g027540 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 0.0e+00 1088.9 560 94.6
Lj1g0008389 Lotus japonicus HOM05D004180 ORTHO05D005323 0.0e+00 1088.9 564 93.3
Potri.015G090500 Populus trichocarpa HOM05D004180 ORTHO05D005323 0.0e+00 1088.9 562 93.8
TAR622G0515 Trochodendron aralioides HOM05D004180 ORTHO05D005323 0.0e+00 1088.9 564 93.4
AUR62001277 Chenopodium quinoa HOM05D004180 ORTHO05D005323 0.0e+00 1088.6 563 93.4
HanXRQChr02g0035141 Helianthus annuus HOM05D004180 ORTHO05D005323 0.0e+00 1087.8 565 93.6
Thecc.03G122700 Theobroma cacao HOM05D004180 ORTHO05D005323 0.0e+00 1087.0 565 94.0
Potri.012G092800 Populus trichocarpa HOM05D004180 ORTHO05D005323 0.0e+00 1085.9 562 93.8
THA.LOC104811605 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 0.0e+00 1085.5 566 93.6
Manes.14G055300 Manihot esculenta HOM05D004180 ORTHO05D005323 0.0e+00 1085.1 562 93.2
QL10p005240 Quercus lobata HOM05D004180 ORTHO05D005323 0.0e+00 1085.1 562 93.4
Cpa.g.sc4.68 Carica papaya HOM05D004180 ORTHO05D005323 0.0e+00 1084.7 565 93.8
Haze_07277 Corylus avellana HOM05D004180 ORTHO05D005323 0.0e+00 1084.7 564 93.6
AUR62025729 Chenopodium quinoa HOM05D004180 ORTHO05D005323 0.0e+00 1084.3 563 92.9
Ca_16090_v3 Cicer arietinum L. HOM05D004180 ORTHO05D005323 0.0e+00 1084.3 564 92.9
Sopen03g030100 Solanum pennellii HOM05D004180 ORTHO05D005323 0.0e+00 1084.3 563 93.4
PGSC0003DMG401015202 Solanum tuberosum HOM05D004180 ORTHO05D005323 0.0e+00 1084.3 563 93.4
Solyc03g110910.4 Solanum lycopersicum HOM05D004180 ORTHO05D005323 0.0e+00 1083.6 563 93.4
Glyma.04G192900 Glycine max HOM05D004180 ORTHO05D005323 0.0e+00 1083.2 563 93.1
MSTRG.22929 Avicennia marina HOM05D004180 ORTHO05D005323 0.0e+00 1082.0 564 93.1
Lsat_1_v5_gn_1_8721 Lactuca sativa HOM05D004180 ORTHO05D005323 0.0e+00 1082.0 565 93.3
TWI14G0632 Tripterygium wilfordii HOM05D004180 ORTHO05D005323 0.0e+00 1082.0 560 93.2
Ciclev10019518m.g Citrus clementina HOM05D004180 ORTHO05D005323 0.0e+00 1081.2 563 93.3
Eucgr.B00149 Eucalyptus grandis HOM05D004180 ORTHO05D005323 0.0e+00 1081.2 561 93.4
Nn3g16580 Nelumbo nucifera HOM05D004180 ORTHO05D005323 0.0e+00 1080.9 564 92.7
Lalb_Chr08g0236941 Lupinus albus HOM05D004180 ORTHO05D005323 0.0e+00 1079.3 559 93.6
ECA247G0271 Erigeron canadensis HOM05D004180 ORTHO05D005323 0.0e+00 1078.9 567 93.1
FAN13G2268 Fragaria x ananassa HOM05D004180 ORTHO05D005323 0.0e+00 1078.9 568 92.8
Psat6g217640 Pisum sativum HOM05D004180 ORTHO05D005323 0.0e+00 1078.9 564 92.4
Ah.08g218120 Amaranthus hybridus HOM05D004180 ORTHO05D005323 0.0e+00 1078.5 566 92.4
Sed0010285 Sechium edule HOM05D004180 ORTHO05D005323 0.0e+00 1078.5 563 93.3
CANSAT80G2894 Cannabis sativa HOM05D004180 ORTHO05D005323 0.0e+00 1077.8 565 92.7
THA.LOC104803140 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 0.0e+00 1077.8 562 93.2
CsaV3_1G000820 Cucumis sativus L. HOM05D004180 ORTHO05D005323 0.0e+00 1077.4 563 93.1
arahy.Tifrunner.gnm1.ann1.Y3SZAS Arachis hypogaea HOM05D004180 ORTHO05D005323 0.0e+00 1077.0 560 93.0
EL10Ac7g18073 Beta vulgaris HOM05D004180 ORTHO05D005323 0.0e+00 1077.0 563 92.5
FAN04G2334 Fragaria x ananassa HOM05D004180 ORTHO05D005323 0.0e+00 1077.0 566 92.8
FAN08G3357 Fragaria x ananassa HOM05D004180 ORTHO05D005323 0.0e+00 1077.0 566 92.8
Gohir.A07G053600 Gossypium hirsutum HOM05D004180 ORTHO05D005323 0.0e+00 1076.6 563 93.3
Gorai.007G041800 Gossypium raimondii HOM05D004180 ORTHO05D005323 0.0e+00 1076.6 597 89.3
FAN18G2865 Fragaria x ananassa HOM05D004180 ORTHO05D005323 0.0e+00 1076.2 566 92.6
MD14G1163700 Malus domestica HOM05D004180 ORTHO05D005323 0.0e+00 1076.2 565 92.6
FvH4_5g07340 Fragaria vesca HOM05D004180 ORTHO05D005323 0.0e+00 1075.5 566 92.6
MELO3C026234.2 Cucumis melo HOM05D004180 ORTHO05D005323 0.0e+00 1075.1 563 92.9
TPR.G3286 Trifolium pratense HOM05D004180 ORTHO05D005323 7.7e-312 1072.8 564 91.7
Prupe.5G157100 Prunus persica HOM05D004180 ORTHO05D005323 1.5e-311 1072.0 567 92.4
Aa31LG3G5910 Aethionema arabicum HOM05D004180 ORTHO05D005323 1.9e-311 1071.6 566 91.9
RcHm_v2.0_Chr7g0191201 Rosa chinensis HOM05D004180 ORTHO05D005323 3.5e-311 1070.8 568 92.3
Glyma.06G173000 Glycine max HOM05D004180 ORTHO05D005323 5.8e-311 1070.1 563 91.8
Medtr1g107255 Medicago truncatula HOM05D004180 ORTHO05D005323 1.0e-310 1069.3 564 91.7
VMungo1309G1699 Vigna mungo HOM05D004180 ORTHO05D005323 1.0e-310 1069.3 559 92.3
Phvul.009G168900 Phaseolus vulgaris HOM05D004180 ORTHO05D005323 1.7e-310 1068.5 560 92.0
arahy.Tifrunner.gnm1.ann1.598RU2 Arachis hypogaea HOM05D004180 ORTHO05D005323 2.2e-310 1068.1 581 89.7
CARHR258210 Cardamine hirsuta HOM05D004180 ORTHO05D005323 2.9e-310 1067.8 567 91.2
unitig_22.g5936 Utricularia gibba HOM05D004180 ORTHO05D005323 2.5e-309 1064.7 562 91.1
Oeu044608.1 Olea europaea HOM05D004180 ORTHO05D005323 3.2e-309 1064.3 564 92.2
PSO063G5665 Papaver somniferum HOM05D004180 ORTHO05D005323 3.2e-309 1064.3 559 91.2
Sp6g12400 Schrenkiella parvula HOM05D004180 ORTHO05D005323 7.2e-309 1063.1 567 90.7
Lj5C100T5 Lonicera japonica HOM05D004180 ORTHO05D005323 1.2e-308 1062.4 594 88.7
Thhalv10013124m.g Eutrema salsugineum HOM05D004180 ORTHO05D005323 1.6e-308 1062.0 566 90.8
AT5G50320 Arabidopsis thaliana HOM05D004180 ORTHO05D005323 2.1e-308 1061.6 566 90.8
C03p33510 Brassica napus HOM05D004180 ORTHO05D005323 2.1e-308 1061.6 566 90.6
BolC3t15672H Brassica oleracea HOM05D004180 ORTHO05D005323 2.1e-308 1061.6 566 90.6
AL8G24380 Arabidopsis lyrata HOM05D004180 ORTHO05D005323 2.7e-308 1061.2 566 90.6
Carub.0008s1036 Capsella rubella HOM05D004180 ORTHO05D005323 4.7e-308 1060.4 564 90.8
Sabra12G0067400 Salix brachista HOM05D004180 ORTHO05D005323 7.9e-308 1059.7 617 85.3
Zm00001eb079280 Zea mays HOM05D004180 ORTHO05D005323 7.9e-308 1059.7 571 90.5
A03p27780 Brassica napus HOM05D004180 ORTHO05D005323 1.4e-307 1058.9 566 90.5
BraA03t11989Z Brassica rapa HOM05D004180 ORTHO05D005323 1.4e-307 1058.9 566 90.5
ClCG06G017620 Citrullus lanatus HOM05D004180 ORTHO05D005323 3.0e-307 1057.7 599 87.6
ATR0824G280 Amborella trichopoda HOM05D004180 ORTHO05D005323 6.7e-307 1056.6 566 91.2
Os04g0484900 Oryza sativa ssp. japonica HOM05D004180 ORTHO05D005323 9.7e-306 1052.7 553 92.0
Zm00001eb425150 Zea mays HOM05D004180 ORTHO05D005323 2.8e-305 1051.2 572 89.5
HPP92_004592 Vanilla planifolia HOM05D004180 ORTHO05D005323 8.2e-305 1049.7 560 91.2
Mapoly0095s0008 Marchantia polymorpha HOM05D004180 ORTHO05D005323 5.5e-301 1036.9 551 89.1
Migut.I00474 Erythranthe guttata HOM05D004180 ORTHO05D005323 9.4e-301 1036.2 575 89.6
CAN.G352.60 Capsicum annuum HOM05D004180 ORTHO05D005323 1.4e-299 1032.3 523 95.2
Pp3c18_6090 Physcomitrium patens HOM05D004180 ORTHO05D005323 4.5e-295 1017.3 562 86.8
SMO137G0131 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 5.9e-295 1016.9 557 86.9
SMO170G0003 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 7.7e-295 1016.5 557 86.9
Eucgr.L01338 Eucalyptus grandis HOM05D004180 ORTHO05D005323 1.2e-290 1002.7 561 88.2
AagrBONN_evm.TU.Sc2ySwM_344.3483 Anthoceros agrestis HOM05D004180 ORTHO05D005323 2.2e-289 998.4 538 87.9
BcaB01g02900 Brassica carinata HOM05D004180 ORTHO05D005323 5.5e-285 983.8 523 90.8
CDE02G3278 Ceratophyllum demersum HOM05D004180 ORTHO05D005323 1.3e-278 962.6 489 94.1
Nn4g22462 Nelumbo nucifera HOM05D004180 ORTHO05D005323 1.3e-278 962.6 496 93.5
GSVIVG01007544001 Vitis vinifera HOM05D004180 ORTHO05D005323 4.9e-265 917.5 456 95.8
BcaC01g04814 Brassica carinata HOM05D004180 ORTHO05D005323 3.0e-262 908.3 566 80.6
MCO06G075 Micromonas commoda HOM05D004180 ORTHO05D005323 3.3e-261 904.8 540 79.4
vmacro16709 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 3.2e-248 861.7 564 78.2
Cre07.g354100 Chlamydomonas reinhardtii HOM05D004180 ORTHO05D005323 1.5e-245 852.8 540 77.0
vmacro16658 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 5.8e-242 840.9 566 76.9
Hma1.2p1_0046F.1_g027550 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 2.0e-234 815.8 420 94.8
Sc10g0010340 Simmondsia chinensis HOM05D004180 ORTHO05D005323 2.0e-234 815.8 408 95.3
vmacro23155 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 4.9e-233 811.2 564 74.8
FvH4_5g07450 Fragaria vesca HOM05D004180 ORTHO05D005323 1.0e-230 803.5 528 78.2
Nitab4.5_0001311g0030 Nicotiana tabacum HOM05D004180 ORTHO05D005323 7.4e-229 797.3 523 78.2
Actinidia19386 Actinidia chinensis HOM05D004180 ORTHO05D005323 8.1e-228 793.9 564 74.6
Nitab4.5_0011188g0020 Nicotiana tabacum HOM05D004180 ORTHO05D005323 1.8e-227 792.7 523 77.8
SGA_v2.0_scaffold338G49249 Striga asiatica HOM05D004180 ORTHO05D005323 7.6e-226 787.3 561 72.9
SMO137G0321 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 2.7e-223 778.9 506 75.3
Dinv38470 Davidia involucrata HOM05D004180 ORTHO05D005323 1.1e-219 766.9 389 95.4
Pp3c21_15940 Physcomitrium patens HOM05D004180 ORTHO05D005323 2.9e-209 732.3 551 67.9
MBI11_g17238_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 9.7e-197 690.6 503 71.8
PGR083G1171 Punica granatum HOM05D004180 ORTHO05D005323 2.3e-190 669.5 331 96.4
CBR_g17965 Chara braunii HOM05D004180 ORTHO05D005323 2.7e-170 602.8 312 91.0
Aqoxy3G01433 Aquilegia oxysepala HOM05D004180 ORTHO05D005323 3.8e-161 572.4 511 61.4
SalBow5G4699 Salvia bowleyana HOM05D004180 ORTHO05D005323 6.2e-151 538.5 555 55.9
Gorai.003G153300 Gossypium raimondii HOM05D004180 ORTHO05D005323 7.8e-146 521.5 262 94.7
Actinidia16192 Actinidia chinensis HOM05D004180 ORTHO05D005323 2.9e-140 503.1 300 84.7
SMO170G0065 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 6.0e-138 495.4 462 58.0
MBI11_g36312_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 7.1e-131 471.9 505 54.1
Gorai.001G061500 Gossypium raimondii HOM05D004180 ORTHO05D005323 1.2e-130 471.1 258 90.7
Cfa018893 Carpinus fangiana HOM05D004180 ORTHO05D005323 4.3e-128 462.6 567 50.1
BcaB01g02898 Brassica carinata HOM05D004180 ORTHO05D001269 1.6e-127 460.7 293 78.8
Peaxi162Scf00089g00242 Petunia axillaris HOM05D004180 ORTHO05D005323 6.9e-126 455.3 563 49.2
MD06G1152200 Malus domestica HOM05D004180 ORTHO05D005323 6.4e-124 448.7 385 62.9
SMO137G0375 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.7e-121 440.7 499 49.9
Gohir.D07G057966 Gossypium hirsutum HOM05D004180 ORTHO05D005323 2.2e-116 423.7 237 89.9
DCAR_025596 Daucus carota HOM05D004180 ORTHO05D005323 8.7e-113 411.8 350 62.3
SEGI_10248 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 1.4e-107 394.4 196 94.4
SalBow5G4032 Salvia bowleyana HOM05D004180 ORTHO05D005323 7.9e-98 362.1 267 70.0
MD06G1156700 Malus domestica HOM05D004180 ORTHO05D005323 3.9e-97 359.8 246 74.8
SMO170G0034 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.8e-94 350.9 214 79.0
Gohir.D07G058032 Gossypium hirsutum HOM05D004180 ORTHO05D005323 3.8e-92 343.2 167 97.6
SMO170G0001 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 4.2e-91 339.7 183 85.8
MD06G1155900 Malus domestica HOM05D004180 ORTHO05D005323 2.7e-90 337.0 305 62.6
CAN.G1231.25 Capsicum annuum HOM05D004180 ORTHO05D005323 2.6e-85 320.5 154 96.8
SEGI_27035 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 2.9e-84 317.0 160 92.5
MD06G1153400 Malus domestica HOM05D004180 ORTHO05D005323 5.0e-84 316.2 321 57.3
Dinv38471 Davidia involucrata HOM05D004180 ORTHO05D005323 4.2e-83 313.2 158 94.3
Sabra15G0112600 Salix brachista HOM05D004180 ORTHO05D005323 6.7e-73 279.3 176 81.8
SEGI_32601 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 6.1e-66 256.1 152 84.2
AL664U10020 Arabidopsis lyrata HOM05D004180 ORTHO05D005323 1.4e-65 255.0 159 79.9
MD06G1155000 Malus domestica HOM05D004180 ORTHO05D005323 1.5e-51 208.4 123 84.6
FvH4_5g07410 Fragaria vesca HOM05D004180 ORTHO05D005323 2.8e-50 204.1 105 93.3
CBR_g17964 Chara braunii HOM05D004180 ORTHO05D005323 8.0e-50 202.6 133 76.7
SMO137G0281 Selaginella moellendorffii HOM05D004180 ORTHO05D020683 2.0e-45 188.0 279 43.4
MD06G1155400 Malus domestica HOM05D004180 ORTHO05D005323 1.7e-44 184.9 113 82.3
SalBow5G1916 Salvia bowleyana HOM05D004180 ORTHO05D005323 2.9e-44 184.1 138 67.4
RcHm_v2.0_Chr5g0026811 Rosa chinensis HOM05D004180 ORTHO05D005323 8.0e-34 149.4 98 79.6
FAN22G0033 Fragaria x ananassa HOM05D004180 ORTHO05D020683 4.6e-29 133.7 143 53.8
MD06G1154300 Malus domestica HOM05D004180 ORTHO05D005323 5.1e-28 130.2 75 86.7
CAN.G1231.26 Capsicum annuum HOM05D004180 ORTHO05D005323 1.2e-26 125.6 73 87.7
FvH4_3g25041 Fragaria vesca HOM05D004180 ORTHO05D020683 2.6e-24 117.9 86 74.4
MD06G1155200 Malus domestica HOM05D004180 ORTHO05D005323 5.4e-22 110.2 55 96.4
MD06G1156800 Malus domestica HOM05D004180 ORTHO05D005323 4.3e-19 100.5 58 84.5
Actinidia19390 Actinidia chinensis HOM05D004180 ORTHO05D005323 1.8e-17 95.1 53 84.9
MD06G1154500 Malus domestica HOM05D004180 ORTHO05D005323 1.5e-16 92.0 47 91.5
MD00G1134500 Malus domestica HOM05D004180 ORTHO05D005323 2.0e-16 91.7 63 71.4
Migut.I00277 Erythranthe guttata HOM05D004180 ORTHO05D005323 4.9e-15 87.0 88 61.4
MD06G1155500 Malus domestica HOM05D004180 ORTHO05D005323 6.4e-15 86.7 44 86.4
MD06G1152600 Malus domestica HOM05D004180 ORTHO05D020683 8.4e-15 86.3 49 83.7
MD06G1155100 Malus domestica HOM05D004180 ORTHO05D005323 4.2e-14 84.0 59 69.5
MD06G1154200 Malus domestica HOM05D004180 ORTHO05D020683 1.4e-09 68.9 60 65.0
MD06G1152100 Malus domestica HOM05D004180 ORTHO05D020683 4.0e-09 67.4 49 69.4
MD06G1156600 Malus domestica HOM05D004180 ORTHO05D020683 7.1e-06 56.6 54 59.3


User provided reference genes

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