Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023800 Camellia sinensis var. sinensis HOM05D005778 ORTHO05D007245 4.9e-214 747.7 415 100.0
Dinv16426 Davidia involucrata HOM05D005778 ORTHO05D007245 1.8e-171 606.3 413 79.9
Actinidia31890 Actinidia chinensis HOM05D005778 ORTHO05D007245 7.7e-167 590.9 416 81.2
Cfa002785 Carpinus fangiana HOM05D005778 ORTHO05D007245 5.2e-155 551.6 411 74.0
GSVIVG01022267001 Vitis vinifera HOM05D005778 ORTHO05D007245 6.8e-155 551.2 402 72.9
Lj4C861G1 Lonicera japonica HOM05D005778 ORTHO05D007245 1.6e-151 540.0 479 65.1
CiPaw.03G131700 Carya illinoinensis HOM05D005778 ORTHO05D007245 4.5e-151 538.5 411 74.0
Prupe.6G166800 Prunus persica HOM05D005778 ORTHO05D007245 1.9e-149 533.1 394 69.0
Thecc.01G117000 Theobroma cacao HOM05D005778 ORTHO05D007245 4.7e-148 528.5 396 67.7
Gorai.011G114700 Gossypium raimondii HOM05D005778 ORTHO05D007245 6.8e-147 524.6 411 67.2
TAR628G0341 Trochodendron aralioides HOM05D005778 ORTHO05D007245 2.6e-146 522.7 412 72.1
MD15G1335700 Malus domestica HOM05D005778 ORTHO05D007245 3.7e-145 518.8 415 65.5
Gohir.A10G082700 Gossypium hirsutum HOM05D005778 ORTHO05D007245 4.9e-145 518.5 411 66.4
Gohir.D10G105000 Gossypium hirsutum HOM05D005778 ORTHO05D007245 1.1e-144 517.3 411 68.6
CANSAT01G2349 Cannabis sativa HOM05D005778 ORTHO05D007245 4.1e-144 515.4 399 73.7
Rhsim10G0147200 Rhododendron simsii HOM05D005778 ORTHO05D007245 5.4e-144 515.0 306 81.7
Prupe.1G550600 Prunus persica HOM05D005778 ORTHO05D007245 7.7e-143 511.1 415 65.1
SalBow5G2484 Salvia bowleyana HOM05D005778 ORTHO05D007245 5.0e-142 508.4 351 80.6
Atru.chr4.723 Acer truncatum HOM05D005778 ORTHO05D007245 1.9e-141 506.5 412 65.5
vmacro12878 Vaccinium macrocarpon HOM05D005778 ORTHO05D007245 4.3e-141 505.4 479 64.3
DCAR_016672 Daucus carota HOM05D005778 ORTHO05D007245 2.1e-140 503.1 428 65.0
TWI79G0191 Tripterygium wilfordii HOM05D005778 ORTHO05D007245 2.1e-140 503.1 390 65.4
PGR119G1966 Punica granatum HOM05D005778 ORTHO05D007245 8.0e-140 501.1 414 68.1
Migut.L00055 Erythranthe guttata HOM05D005778 ORTHO05D007245 1.4e-139 500.4 420 70.2
ClCG01G015860 Citrullus lanatus HOM05D005778 ORTHO05D007245 5.2e-139 498.4 411 71.0
VMungo0251G2366 Vigna mungo HOM05D005778 ORTHO05D007245 8.9e-139 497.7 396 69.9
Sopen04g022870 Solanum pennellii HOM05D005778 ORTHO05D007245 2.6e-138 496.1 391 72.6
Nn5g28812 Nelumbo nucifera HOM05D005778 ORTHO05D007245 7.5e-138 494.6 304 79.9
Phvul.002G267400 Phaseolus vulgaris HOM05D005778 ORTHO05D007245 7.5e-138 494.6 387 73.6
CsaV3_6G042140 Cucumis sativus L. HOM05D005778 ORTHO05D007245 9.8e-138 494.2 411 69.1
Solyc04g051490.3 Solanum lycopersicum HOM05D005778 ORTHO05D007245 1.7e-137 493.4 391 72.4
Ciclev10025290m.g Citrus clementina HOM05D005778 ORTHO05D007245 2.2e-137 493.0 412 65.0
MD15G1404100 Malus domestica HOM05D005778 ORTHO05D007245 2.2e-137 493.0 307 77.9
Glyma.05G186200 Glycine max HOM05D005778 ORTHO05D007245 8.3e-137 491.1 374 75.7
Sed0016319 Sechium edule HOM05D005778 ORTHO05D007245 1.1e-136 490.7 392 69.6
Potri.007G077400 Populus trichocarpa HOM05D005778 ORTHO05D007245 1.4e-136 490.3 416 69.2
QL06p031408 Quercus lobata HOM05D005778 ORTHO05D007245 1.8e-136 490.0 506 60.9
SGA_v2.0_scaffold47G17685 Striga asiatica HOM05D005778 ORTHO05D007245 4.1e-136 488.8 396 69.7
Manes.12G145400 Manihot esculenta HOM05D005778 ORTHO05D007245 5.4e-136 488.4 378 69.6
arahy.Tifrunner.gnm1.ann1.A9RKWD Arachis hypogaea HOM05D005778 ORTHO05D007245 9.2e-136 487.6 379 73.9
Nitab4.5_0000184g0070 Nicotiana tabacum HOM05D005778 ORTHO05D007245 1.2e-135 487.3 394 68.3
TPR.G2233 Trifolium pratense HOM05D005778 ORTHO05D007245 1.2e-135 487.3 387 73.6
Peaxi162Scf00025g03317 Petunia axillaris HOM05D005778 ORTHO05D007245 1.6e-135 486.9 409 67.5
Cc07_g16660 Coffea canephora HOM05D005778 ORTHO05D007245 3.5e-135 485.7 306 75.2
arahy.Tifrunner.gnm1.ann1.2KBC6S Arachis hypogaea HOM05D005778 ORTHO05D007245 5.9e-135 485.0 379 73.4
Lj4g0013346 Lotus japonicus HOM05D005778 ORTHO05D007245 1.0e-134 484.2 374 73.8
Medtr8g092300 Medicago truncatula HOM05D005778 ORTHO05D007245 1.7e-134 483.4 368 76.1
Psat7g049960 Pisum sativum HOM05D005778 ORTHO05D007245 2.3e-134 483.0 368 75.8
Eucgr.I00295 Eucalyptus grandis HOM05D005778 ORTHO05D007245 9.5e-133 477.6 306 74.2
CAN.G860.4 Capsicum annuum HOM05D005778 ORTHO05D007245 3.6e-132 475.7 390 71.0
Lalb_Chr12g0203421 Lupinus albus HOM05D005778 ORTHO05D007245 3.6e-132 475.7 303 75.6
THA.LOC104804137 Tarenaya hassleriana HOM05D005778 ORTHO05D007245 3.6e-132 475.7 392 70.7
HanXRQChr09g0254171 Helianthus annuus HOM05D005778 ORTHO05D007245 2.6e-130 469.5 414 62.6
Aqoxy5G02041 Aquilegia oxysepala HOM05D005778 ORTHO05D007245 4.4e-130 468.8 308 74.7
Sabra07G0065400 Salix brachista HOM05D005778 ORTHO05D007245 4.4e-130 468.8 432 64.8
FvH4_1g23210 Fragaria vesca HOM05D005778 ORTHO05D007245 2.9e-129 466.1 407 61.4
PSO170G4940 Papaver somniferum HOM05D005778 ORTHO05D007245 3.7e-129 465.7 360 71.9
RcHm_v2.0_Chr2g0117911 Rosa chinensis HOM05D005778 ORTHO05D007245 1.1e-128 464.2 407 64.1
CDE07G0129 Ceratophyllum demersum HOM05D005778 ORTHO05D007245 5.4e-128 461.8 412 57.5
FAN19G0143 Fragaria x ananassa HOM05D005778 ORTHO05D007245 2.0e-127 459.9 417 60.9
Ca_17674_v3 Cicer arietinum L. HOM05D005778 ORTHO05D007245 1.7e-126 456.8 419 67.3
Lsat_1_v5_gn_4_138380 Lactuca sativa HOM05D005778 ORTHO05D007245 3.9e-126 455.7 401 60.1
MSTRG.15762 Avicennia marina HOM05D005778 ORTHO05D007245 5.6e-125 451.8 273 78.8
ATR0800G169 Amborella trichopoda HOM05D005778 ORTHO05D007245 7.3e-125 451.4 359 67.7
Sc03g0004580 Simmondsia chinensis HOM05D005778 ORTHO05D007245 2.8e-124 449.5 307 70.7
Haze_25082 Corylus avellana HOM05D005778 ORTHO05D007245 7.5e-122 441.4 499 57.1
Thhalv10000104m.g Eutrema salsugineum HOM05D005778 ORTHO05D007245 1.7e-121 440.3 395 63.0
Sp4g01220 Schrenkiella parvula HOM05D005778 ORTHO05D007245 2.7e-119 433.0 392 63.0
HPP92_017324 Vanilla planifolia HOM05D005778 ORTHO05D007245 2.7e-119 433.0 304 68.8
unitig_37.g12529 Utricularia gibba HOM05D005778 ORTHO05D007245 3.5e-119 432.6 382 61.5
RcHm_v2.0_Chr7g0226611 Rosa chinensis HOM05D005778 ORTHO05D007245 1.3e-118 430.6 365 61.4
BcaC07g41093 Brassica carinata HOM05D005778 ORTHO05D007245 1.7e-118 430.3 394 61.2
BolC8t51659H Brassica oleracea HOM05D005778 ORTHO05D007245 1.7e-118 430.3 394 61.2
AL4G11490 Arabidopsis lyrata HOM05D005778 ORTHO05D007245 3.0e-118 429.5 303 68.6
Aqoxy4G02517 Aquilegia oxysepala HOM05D005778 ORTHO05D007245 5.1e-118 428.7 309 68.9
CARHR113310 Cardamine hirsuta HOM05D005778 ORTHO05D007245 5.1e-118 428.7 303 68.0
BraA09t41166Z Brassica rapa HOM05D005778 ORTHO05D007245 6.6e-118 428.3 394 62.9
C08p40960 Brassica napus HOM05D005778 ORTHO05D007245 1.9e-117 426.8 394 60.7
A09p57740 Brassica napus HOM05D005778 ORTHO05D007245 2.5e-117 426.4 394 62.4
Carub.0004s0131 Capsella rubella HOM05D005778 ORTHO05D007245 3.3e-117 426.0 307 66.8
AT2G22140 Arabidopsis thaliana HOM05D005778 ORTHO05D007245 4.3e-117 425.6 306 67.0
BcaB08g35041 Brassica carinata HOM05D005778 ORTHO05D007245 9.5e-117 424.5 305 67.2
BolC7t42688H Brassica oleracea HOM05D005778 ORTHO05D007245 1.6e-116 423.7 308 67.2
FAN23G1488 Fragaria x ananassa HOM05D005778 ORTHO05D007245 2.0e-114 416.8 383 59.8
ECA238G1732 Erigeron canadensis HOM05D005778 ORTHO05D007245 5.8e-114 415.2 369 63.1
Hund19626 Selenicereus undatus HOM05D005778 ORTHO05D007245 5.8e-114 415.2 307 65.5
Aa31LG7G14570 Aethionema arabicum HOM05D005778 ORTHO05D007245 1.2e-111 407.5 413 57.1
MELO3C007452.2 Cucumis melo HOM05D005778 ORTHO05D007245 7.3e-109 398.3 334 62.9
Thhalv10000122m.g Eutrema salsugineum HOM05D005778 ORTHO05D007245 5.2e-107 392.1 345 64.9
AL4G11110 Arabidopsis lyrata HOM05D005778 ORTHO05D007245 1.5e-106 390.6 399 58.6
CARHR112840 Cardamine hirsuta HOM05D005778 ORTHO05D007245 4.4e-106 389.0 408 56.4
Carub.0004s0085 Capsella rubella HOM05D005778 ORTHO05D007245 7.1e-104 381.7 307 59.0
Oeu001980.1 Olea europaea HOM05D005778 ORTHO05D007245 1.7e-102 377.1 458 49.1
AT2G21800 Arabidopsis thaliana HOM05D005778 ORTHO05D007245 2.3e-102 376.7 300 60.0
EL10Ac6g15224 Beta vulgaris HOM05D005778 ORTHO05D007245 3.1e-99 366.3 306 59.2
BolC4t26687H Brassica oleracea HOM05D005778 ORTHO05D007245 2.6e-98 363.2 398 50.3
Os04g0648700 Oryza sativa ssp. japonica HOM05D005778 ORTHO05D007245 1.7e-97 360.5 305 59.3
BcaC02g08761 Brassica carinata HOM05D005778 ORTHO05D007245 6.4e-97 358.6 396 49.7
C04p50950 Brassica napus HOM05D005778 ORTHO05D007245 6.4e-97 358.6 396 49.7
BcaB06g27789 Brassica carinata HOM05D005778 ORTHO05D007245 7.1e-96 355.1 397 51.9
BraA04t17279Z Brassica rapa HOM05D005778 ORTHO05D007245 2.1e-95 353.6 397 52.4
A04p16440 Brassica napus HOM05D005778 ORTHO05D007245 6.0e-95 352.1 397 51.9
Sp4g00940 Schrenkiella parvula HOM05D005778 ORTHO05D007245 1.8e-94 350.5 299 58.9
Zm00001eb068550 Zea mays HOM05D005778 ORTHO05D007245 3.6e-92 342.8 399 49.9
FvH4_5g31350 Fragaria vesca HOM05D005778 ORTHO05D007245 3.0e-86 323.2 257 65.4
Hund03512 Selenicereus undatus HOM05D005778 ORTHO05D007245 6.7e-86 322.0 348 52.3
AUR62003644 Chenopodium quinoa HOM05D005778 ORTHO05D007245 6.2e-84 315.5 409 51.3
Pp3c5_3310 Physcomitrium patens HOM05D005778 ORTHO05D007245 9.3e-80 301.6 334 46.7
FAN28G2237 Fragaria x ananassa HOM05D005778 ORTHO05D007245 2.1e-79 300.4 320 53.8
AagrBONN_evm.TU.Sc2ySwM_228.2963 Anthoceros agrestis HOM05D005778 ORTHO05D007245 3.5e-79 299.7 332 47.9
Mapoly0041s0060 Marchantia polymorpha HOM05D005778 ORTHO05D007245 3.7e-76 289.7 327 44.0
Nitab4.5_0011929g0010 Nicotiana tabacum HOM05D005778 ORTHO05D007245 6.5e-73 278.9 284 58.5
Cpa.g.sc72.53 Carica papaya HOM05D005778 ORTHO05D007245 4.2e-72 276.2 276 62.7
Nitab4.5_0021115g0010 Nicotiana tabacum HOM05D005778 ORTHO05D007245 4.2e-72 276.2 273 64.5
FAN26G2893 Fragaria x ananassa HOM05D005778 ORTHO05D007245 2.7e-71 273.5 352 47.4
Glyma.08G144700 Glycine max HOM05D005778 ORTHO05D007245 2.5e-69 266.9 182 69.8
COL.COLO4_03471 Corchorus olitorius HOM05D005778 ORTHO05D007245 2.2e-65 253.8 147 81.6
SMO352G0072 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 2.5e-56 223.8 267 45.7
Cpa.g.sc72.54 Carica papaya HOM05D005778 ORTHO05D007245 1.1e-51 208.4 124 80.6
CBR_g21043 Chara braunii HOM05D005778 ORTHO05D007245 1.0e-46 191.8 383 34.7
SMO288G0013 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 1.6e-39 167.9 286 38.1
SalBow5G4900 Salvia bowleyana HOM05D005778 ORTHO05D007245 4.2e-32 143.3 184 43.5
SEGI_24036 Sequoiadendron giganteum HOM05D005778 ORTHO05D007245 1.2e-31 141.7 106 64.2
PGSC0003DMG400019704 Solanum tuberosum HOM05D005778 ORTHO05D007245 8.6e-25 119.0 72 79.2
Hma1.2p1_0070F.1_g037570 Hydrangea macrophylla HOM05D005778 ORTHO05D007245 1.0e-22 112.1 111 53.2
FAN18G1125 Fragaria x ananassa HOM05D005778 ORTHO05D007245 1.1e-19 102.1 118 46.6
SEGI_25471 Sequoiadendron giganteum HOM05D005778 ORTHO05D007245 1.3e-17 95.1 62 66.1
CARHR113290 Cardamine hirsuta HOM05D005778 ORTHO05D007245 1.7e-17 94.7 62 66.1
Oeu017817.1 Olea europaea HOM05D001353 ORTHO05D002359 4.4e-13 80.1 62 58.1
Oeu028353.1 Olea europaea HOM05D005778 ORTHO05D007245 3.0e-09 67.4 45 73.3
SMO352G0093 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 1.5e-08 65.1 53 60.4
CARHR113280 Cardamine hirsuta HOM05D000125 ORTHO05D009513 6.2e-07 59.7 37 67.6
MSTRG.15763 Avicennia marina HOM05D005778 ORTHO05D038954 1.8e-06 58.2 117 52.1


User provided reference genes

Program Settings