Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023686 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 0.0e+00 1474.5 741 100.0
CSS0023657 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 0.0e+00 1384.0 740 92.7
CSS0037274 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 0.0e+00 1382.1 740 92.6
Actinidia20454 Actinidia chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1372.8 741 92.4
Manes.04G021700 Manihot esculenta HOM05D004298 ORTHO05D006236 0.0e+00 1372.8 741 91.2
CiPaw.13G112600 Carya illinoinensis HOM05D004298 ORTHO05D006236 0.0e+00 1370.5 741 91.8
Hma1.2p1_1031F.1_g250050 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 0.0e+00 1367.1 739 91.5
QL01p022296 Quercus lobata HOM05D004298 ORTHO05D006236 0.0e+00 1365.5 741 92.0
Prupe.6G101000 Prunus persica HOM05D004298 ORTHO05D006236 0.0e+00 1363.2 741 90.6
GSVIVG01025182001 Vitis vinifera HOM05D004298 ORTHO05D006236 0.0e+00 1363.2 741 90.1
Manes.11G144700 Manihot esculenta HOM05D004298 ORTHO05D006236 0.0e+00 1362.4 741 90.3
Rhsim01G0217200 Rhododendron simsii HOM05D004298 ORTHO05D006236 0.0e+00 1361.7 737 91.7
MD11G1135000 Malus domestica HOM05D004298 ORTHO05D006236 0.0e+00 1360.1 742 90.8
Cpa.g.sc216.13 Carica papaya HOM05D004298 ORTHO05D006236 0.0e+00 1358.2 741 90.0
Thecc.09G340000 Theobroma cacao HOM05D004298 ORTHO05D006236 0.0e+00 1357.8 741 90.4
Duzib168G1617 Durio zibethinus HOM05D004298 ORTHO05D006236 0.0e+00 1356.3 741 90.6
CiPaw.14G080300 Carya illinoinensis HOM05D004298 ORTHO05D006236 0.0e+00 1354.7 743 90.6
RcHm_v2.0_Chr5g0059471 Rosa chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1352.4 741 90.0
MD03G1117300 Malus domestica HOM05D004298 ORTHO05D006236 0.0e+00 1352.0 741 90.3
arahy.Tifrunner.gnm1.ann1.VBZF8N Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1350.9 739 90.4
Nn2g10781 Nelumbo nucifera HOM05D004298 ORTHO05D006236 0.0e+00 1350.9 741 90.0
Peaxi162Scf00270g00819 Petunia axillaris HOM05D004298 ORTHO05D006236 0.0e+00 1345.5 741 90.3
arahy.Tifrunner.gnm1.ann1.ETHX4E Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1343.9 739 89.9
FAN25G3839 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1342.8 741 89.2
FvH4_3g32460 Fragaria vesca HOM05D004298 ORTHO05D006236 0.0e+00 1342.4 741 89.2
CANSAT54G2863 Cannabis sativa HOM05D004298 ORTHO05D006236 0.0e+00 1342.0 741 89.6
Gorai.004G228600 Gossypium raimondii HOM05D004298 ORTHO05D006236 0.0e+00 1340.9 741 89.2
Medtr2g094160 Medicago truncatula HOM05D004298 ORTHO05D006236 0.0e+00 1340.9 741 89.3
FAN21G2260 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1340.5 741 88.9
TWI79G1123 Tripterygium wilfordii HOM05D004298 ORTHO05D006236 0.0e+00 1340.5 741 89.3
FAN11G2723 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1340.1 741 89.2
Gohir.D08G214700 Gossypium hirsutum HOM05D004298 ORTHO05D006236 0.0e+00 1339.7 741 89.1
FAN16G0818 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1339.3 741 88.9
Potri.009G013400 Populus trichocarpa HOM05D004298 ORTHO05D006236 0.0e+00 1339.3 740 89.3
TPR.G11486 Trifolium pratense HOM05D004298 ORTHO05D006236 0.0e+00 1339.3 741 89.3
TAR636G1671 Trochodendron aralioides HOM05D004298 ORTHO05D006236 0.0e+00 1339.3 742 89.4
PGR102G1912 Punica granatum HOM05D004298 ORTHO05D006236 0.0e+00 1337.4 741 88.9
Glyma.13G326400 Glycine max HOM05D004298 ORTHO05D006236 0.0e+00 1337.0 743 88.7
Sabra09G0008100 Salix brachista HOM05D004298 ORTHO05D006236 0.0e+00 1336.6 741 89.1
Haze_23837 Corylus avellana HOM05D004298 ORTHO05D006236 0.0e+00 1335.9 763 87.8
Haze_23839 Corylus avellana HOM05D004298 ORTHO05D006236 0.0e+00 1335.9 763 87.8
Ca_01417_v3 Cicer arietinum L. HOM05D004298 ORTHO05D006236 0.0e+00 1334.7 741 89.2
Ciclev10027881m.g Citrus clementina HOM05D004298 ORTHO05D006236 0.0e+00 1334.7 742 89.1
Lj3g0003128 Lotus japonicus HOM05D004298 ORTHO05D006236 0.0e+00 1333.9 768 86.6
TAR636G3405 Trochodendron aralioides HOM05D004298 ORTHO05D006236 0.0e+00 1333.9 742 89.1
VMungo1080G1181 Vigna mungo HOM05D004298 ORTHO05D006236 0.0e+00 1331.2 741 88.3
Cc01_g11160 Coffea canephora HOM05D004298 ORTHO05D006236 0.0e+00 1330.1 741 89.1
Nitab4.5_0000650g0220 Nicotiana tabacum HOM05D004298 ORTHO05D006236 0.0e+00 1329.3 741 88.9
Gohir.A08G197500 Gossypium hirsutum HOM05D004298 ORTHO05D006236 0.0e+00 1328.9 747 88.1
Lj2C1029T7 Lonicera japonica HOM05D004298 ORTHO05D006236 0.0e+00 1328.5 743 89.0
SalBow3G4399 Salvia bowleyana HOM05D004298 ORTHO05D006236 0.0e+00 1327.8 743 88.2
Dinv32749 Davidia involucrata HOM05D004298 ORTHO05D006236 0.0e+00 1327.4 707 92.9
Potri.004G210400 Populus trichocarpa HOM05D004298 ORTHO05D006236 0.0e+00 1326.2 739 88.2
Lsat_1_v5_gn_2_98360 Lactuca sativa HOM05D004298 ORTHO05D006236 0.0e+00 1325.8 741 88.1
DCAR_015537 Daucus carota HOM05D004298 ORTHO05D006236 0.0e+00 1323.9 741 87.6
TWI31G1183 Tripterygium wilfordii HOM05D004298 ORTHO05D006236 0.0e+00 1323.5 741 88.1
Solyc11g069380.2 Solanum lycopersicum HOM05D004298 ORTHO05D006236 0.0e+00 1323.1 741 88.4
Sopen11g028100 Solanum pennellii HOM05D004298 ORTHO05D006236 0.0e+00 1322.0 741 88.1
HanXRQChr07g0197541 Helianthus annuus HOM05D004298 ORTHO05D006236 0.0e+00 1321.6 741 87.9
HanXRQChr14g0452871 Helianthus annuus HOM05D004298 ORTHO05D006236 0.0e+00 1321.2 741 87.6
Sabra04G0142000 Salix brachista HOM05D004298 ORTHO05D006236 0.0e+00 1319.3 745 87.5
CAN.G631.24 Capsicum annuum HOM05D004298 ORTHO05D006236 0.0e+00 1318.9 741 88.5
vmacro14439 Vaccinium macrocarpon HOM05D004298 ORTHO05D006236 0.0e+00 1318.9 822 82.5
MSTRG.17806 Avicennia marina HOM05D004298 ORTHO05D006236 0.0e+00 1315.1 743 87.5
Phvul.005G135800 Phaseolus vulgaris HOM05D004298 ORTHO05D006236 0.0e+00 1313.1 741 86.6
Psat5g278240 Pisum sativum HOM05D004298 ORTHO05D006236 0.0e+00 1313.1 741 86.9
PGSC0003DMG400008050 Solanum tuberosum HOM05D004298 ORTHO05D006236 0.0e+00 1312.4 741 88.4
Eucgr.B02495 Eucalyptus grandis HOM05D004298 ORTHO05D006236 0.0e+00 1311.2 741 87.7
Oeu002865.1 Olea europaea HOM05D004298 ORTHO05D006236 0.0e+00 1310.8 744 87.9
Sed0018088 Sechium edule HOM05D004298 ORTHO05D006236 0.0e+00 1310.4 740 87.0
THA.LOC104810855 Tarenaya hassleriana HOM05D004298 ORTHO05D006236 0.0e+00 1308.1 741 86.6
Sp6g22170 Schrenkiella parvula HOM05D004298 ORTHO05D006236 0.0e+00 1307.4 740 86.2
Aa31LG1G12580 Aethionema arabicum HOM05D004298 ORTHO05D006236 0.0e+00 1306.2 736 86.4
Lalb_Chr14g0374701 Lupinus albus HOM05D004298 ORTHO05D006236 0.0e+00 1305.8 738 86.9
Thhalv10012774m.g Eutrema salsugineum HOM05D004298 ORTHO05D006236 0.0e+00 1305.0 737 86.8
EL10Ac9g22507 Beta vulgaris HOM05D004298 ORTHO05D006236 0.0e+00 1304.3 741 86.6
Oeu059093.1 Olea europaea HOM05D004298 ORTHO05D006236 0.0e+00 1303.1 743 87.1
AT5G60600 Arabidopsis thaliana HOM05D004298 ORTHO05D006236 0.0e+00 1302.3 736 86.4
CARHR274260 Cardamine hirsuta HOM05D004298 ORTHO05D006236 0.0e+00 1302.3 736 86.7
AUR62024990 Chenopodium quinoa HOM05D004298 ORTHO05D006236 0.0e+00 1302.3 741 86.5
Migut.N02606 Erythranthe guttata HOM05D004298 ORTHO05D006236 0.0e+00 1302.3 744 87.2
CsaV3_1G012820 Cucumis sativus L. HOM05D004298 ORTHO05D006236 0.0e+00 1302.0 740 86.8
MELO3C005061.2 Cucumis melo HOM05D004298 ORTHO05D006236 0.0e+00 1300.4 740 86.6
Carub.0008s2128 Capsella rubella HOM05D004298 ORTHO05D006236 0.0e+00 1300.0 736 86.3
A10p17790 Brassica napus HOM05D004298 ORTHO05D006236 0.0e+00 1299.3 736 86.1
Lalb_Chr03g0027311 Lupinus albus HOM05D004298 ORTHO05D006236 0.0e+00 1299.3 743 86.1
BraA10t43856Z Brassica rapa HOM05D004298 ORTHO05D006236 0.0e+00 1298.9 736 86.1
AL8G37190 Arabidopsis lyrata HOM05D004298 ORTHO05D006236 0.0e+00 1298.1 736 86.1
MSTRG.12319 Avicennia marina HOM05D004298 ORTHO05D006236 0.0e+00 1298.1 743 87.1
Ah.01g014360 Amaranthus hybridus HOM05D004298 ORTHO05D006236 0.0e+00 1296.6 742 86.1
TAR633G1103 Trochodendron aralioides HOM05D004298 ORTHO05D006236 0.0e+00 1295.4 711 90.4
BcaB08g36355 Brassica carinata HOM05D004298 ORTHO05D006236 0.0e+00 1294.6 737 86.3
ECA238G4788 Erigeron canadensis HOM05D004298 ORTHO05D006236 0.0e+00 1290.8 742 85.3
Aqoxy1G01246 Aquilegia oxysepala HOM05D004298 ORTHO05D006236 0.0e+00 1289.2 741 85.7
Hund08138 Selenicereus undatus HOM05D004298 ORTHO05D006236 0.0e+00 1289.2 741 86.1
ATR0115G030 Amborella trichopoda HOM05D004298 ORTHO05D006236 0.0e+00 1288.5 744 86.0
C09p53300 Brassica napus HOM05D004298 ORTHO05D006236 0.0e+00 1288.5 736 86.1
PSO339G0771 Papaver somniferum HOM05D004298 ORTHO05D006236 0.0e+00 1284.2 744 85.3
PSO384G0735 Papaver somniferum HOM05D004298 ORTHO05D006236 0.0e+00 1282.3 744 85.2
arahy.Tifrunner.gnm1.ann1.068WZH Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1281.9 742 85.2
Lalb_Chr24g0394611 Lupinus albus HOM05D004298 ORTHO05D006236 0.0e+00 1281.2 738 85.5
arahy.Tifrunner.gnm1.ann1.X2DMBM Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1279.6 743 84.9
BcaC04g19719 Brassica carinata HOM05D004298 ORTHO05D006236 0.0e+00 1279.2 736 85.6
ClCG03G002170 Citrullus lanatus HOM05D004298 ORTHO05D006236 0.0e+00 1277.3 803 80.3
Actinidia03730 Actinidia chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1271.5 735 88.2
AUR62039630 Chenopodium quinoa HOM05D004298 ORTHO05D006236 0.0e+00 1270.8 757 83.6
Lj2C1029G11 Lonicera japonica HOM05D004298 ORTHO05D006236 0.0e+00 1266.5 741 86.4
CDE02G3870 Ceratophyllum demersum HOM05D004298 ORTHO05D006236 0.0e+00 1264.2 747 83.7
BolC9t58204H Brassica oleracea HOM05D004298 ORTHO05D006236 0.0e+00 1261.9 772 81.9
DCAR_006060 Daucus carota HOM05D004298 ORTHO05D006236 0.0e+00 1258.0 707 87.7
unitig_27.g25060 Utricularia gibba HOM05D004298 ORTHO05D006236 0.0e+00 1258.0 720 86.1
MBI07_g19314_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D006236 0.0e+00 1244.6 710 86.6
Os02g0603800 Oryza sativa ssp. japonica HOM05D004298 ORTHO05D006236 0.0e+00 1241.5 745 82.4
Zm00001eb246530 Zea mays HOM05D004298 ORTHO05D006236 0.0e+00 1227.2 747 81.4
SEGI_29082 Sequoiadendron giganteum HOM05D004298 ORTHO05D006236 0.0e+00 1226.5 737 82.1
Atru.BG.119.p Acer truncatum HOM05D004298 ORTHO05D006236 0.0e+00 1226.1 669 90.9
Glyma.12G173200 Glycine max HOM05D004298 ORTHO05D006236 0.0e+00 1216.8 674 89.2
SGA_v2.0_scaffold2G00894 Striga asiatica HOM05D004298 ORTHO05D006236 0.0e+00 1203.3 746 82.0
CDE08G0282 Ceratophyllum demersum HOM05D004298 ORTHO05D006236 0.0e+00 1199.1 747 80.1
Sc06g0010150 Simmondsia chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1145.6 616 91.1
Mapoly0048s0084 Marchantia polymorpha HOM05D004298 ORTHO05D006236 0.0e+00 1126.3 739 76.0
HPP92_014714 Vanilla planifolia HOM05D004298 ORTHO05D006236 0.0e+00 1124.0 630 87.8
SMO146G0141 Selaginella moellendorffii HOM05D004298 ORTHO05D006236 0.0e+00 1120.1 686 79.2
Pp3c19_16320 Physcomitrium patens HOM05D004298 ORTHO05D006236 0.0e+00 1119.4 744 74.3
Pp3c22_14940 Physcomitrium patens HOM05D004298 ORTHO05D006236 0.0e+00 1090.5 740 72.6
Pp3c21_19070 Physcomitrium patens HOM05D004298 ORTHO05D006236 1.1e-309 1066.2 686 75.4
AagrBONN_evm.TU.Sc2ySwM_117.2437 Anthoceros agrestis HOM05D004298 ORTHO05D006236 2.2e-297 1025.4 636 79.2
Cre12.g490350 Chlamydomonas reinhardtii HOM05D004298 ORTHO05D006236 8.7e-246 854.0 667 63.6
MCO10G060 Micromonas commoda HOM05D004298 ORTHO05D006236 3.4e-234 815.5 681 61.5
Nitab4.5_0006333g0040 Nicotiana tabacum HOM05D004298 ORTHO05D006236 2.6e-226 789.3 540 76.7
PRCOL_00002263 Prasinoderma coloniale HOM05D004298 ORTHO05D006236 3.4e-218 762.3 644 62.3
Hma1.2p1_0391F.1_g142750 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 1.1e-213 747.3 523 75.0
Nitab4.5_0012814g0010 Nicotiana tabacum HOM05D004298 ORTHO05D006236 1.3e-212 743.8 741 56.8
Nitab4.5_0011114g0030 Nicotiana tabacum HOM05D004298 ORTHO05D006236 2.4e-211 739.6 739 56.6
Atru.chr3.3635 Acer truncatum HOM05D004298 ORTHO05D006236 1.3e-209 733.8 464 80.2
COL.COLO4_18338 Corchorus olitorius HOM05D004298 ORTHO05D006236 1.7e-209 733.4 453 82.6
HanXRQChr13g0402271 Helianthus annuus HOM05D004298 ORTHO05D006236 6.2e-135 485.7 263 89.7
SGA_v2.0_scaffold84G26546 Striga asiatica HOM05D004298 ORTHO05D006236 6.2e-135 485.7 433 61.2
Hma1.2p1_1031F.1_g250040 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 1.7e-103 381.3 218 87.6
CBR_g51121 Chara braunii HOM05D004298 ORTHO05D006236 2.9e-84 317.4 578 37.2
C09p53310 Brassica napus HOM05D004298 ORTHO05D006236 2.8e-74 284.3 151 90.1
HanXRQChr02g0034121 Helianthus annuus HOM05D004298 ORTHO05D006236 2.8e-71 274.2 143 91.6
Nitab4.5_0005621g0180 Nicotiana tabacum HOM05D004609 ORTHO05D005537 6.6e-60 236.5 170 72.9
Ca_28980_v3 Cicer arietinum L. HOM05D004298 ORTHO05D007370 1.4e-41 175.6 321 36.1
MBI12_g33358_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D025791 6.4e-39 166.8 84 91.7
TAR636G3504 Trochodendron aralioides HOM05D004298 ORTHO05D023169 7.1e-38 163.3 98 77.6
MBI12_g31227_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D025791 1.5e-35 155.6 80 91.2
HanXRQChr12g0375701 Helianthus annuus HOM05D004298 ORTHO05D006236 7.8e-29 133.3 72 87.5
TAR636G1311 Trochodendron aralioides HOM05D004298 ORTHO05D023169 5.6e-27 127.1 80 72.5
CAN.G907.27 Capsicum annuum HOM05D002478 ORTHO05D020307 2.0e-24 118.6 71 78.9
SEGI_39119 Sequoiadendron giganteum HOM05D004298 ORTHO05D006236 4.5e-24 117.5 69 78.3
Nn1g05516 Nelumbo nucifera HOM05D001057 ORTHO05D002028 2.4e-22 111.7 70 78.6
arahy.Tifrunner.gnm1.ann1.BZC8YM Arachis hypogaea HOM05D004298 ORTHO05D000893 3.0e-20 104.8 108 53.7
SGA_v2.0_scaffold12G06316 Striga asiatica HOM05D004298 ORTHO05D023169 6.7e-20 103.6 85 58.8
SEGI_37191 Sequoiadendron giganteum HOM05D004298 ORTHO05D050955 1.1e-19 102.8 222 35.1
COL.COLO4_18339 Corchorus olitorius HOM05D004298 ORTHO05D160745 1.3e-18 99.4 69 68.1
CAN.G53.21 Capsicum annuum HOM05D002478 ORTHO05D020307 6.2e-18 97.1 72 70.8
SGA_v2.0_scaffold290G47319 Striga asiatica HOM05D004298 ORTHO05D023169 2.4e-17 95.1 85 54.1
Hma1.2p1_1050F.1_g251950 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 2.0e-16 92.0 67 67.2
Hma1.2p1_0105F.1_g050690 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 1.7e-15 89.0 67 64.2
Peaxi162Scf00218g02111 Petunia axillaris HOM05D004298 ORTHO05D008833 2.1e-13 82.0 49 89.8
Cc00_g31230 Coffea canephora HOM05D004298 ORTHO05D006236 7.9e-13 80.1 47 83.0
SEGI_34190 Sequoiadendron giganteum HOM05D004298 ORTHO05D050955 3.0e-12 78.2 61 63.9
TAR381G0461 Trochodendron aralioides HOM05D004298 ORTHO05D023169 4.3e-11 74.3 58 60.3
TAR156G0002 Trochodendron aralioides HOM05D000002 ORTHO05D000001 1.6e-10 72.4 46 69.6
CAN.G548.17 Capsicum annuum HOM05D002478 ORTHO05D005706 2.1e-10 72.0 43 72.1
TAR381G1634 Trochodendron aralioides HOM05D004298 ORTHO05D023169 2.1e-10 72.0 45 71.1
SEGI_14813 Sequoiadendron giganteum HOM05D016845 ORTHO05D018122 1.4e-09 69.3 41 80.5
SGA_v2.0_scaffold28G11882 Striga asiatica HOM05D000239 ORTHO05D000484 2.0e-08 65.5 52 48.1
TAR625G1187 Trochodendron aralioides HOM05D006212 ORTHO05D008245 3.4e-08 64.7 33 90.9


User provided reference genes

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