Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023599 Camellia sinensis var. sinensis HOM05D001887 ORTHO05D006549 0.0e+00 1585.5 827 100.0
Actinidia02198 Actinidia chinensis HOM05D001887 ORTHO05D006549 0.0e+00 1352.0 827 85.0
vmacro00747 Vaccinium macrocarpon HOM05D001887 ORTHO05D006549 0.0e+00 1305.4 828 82.1
Rhsim07G0136100 Rhododendron simsii HOM05D001887 ORTHO05D006549 0.0e+00 1252.7 1009 69.5
Peaxi162Scf00301g00615 Petunia axillaris HOM05D001887 ORTHO05D006549 0.0e+00 1210.3 827 79.0
Lj8C277T15 Lonicera japonica HOM05D001887 ORTHO05D006549 0.0e+00 1191.0 832 78.4
GSVIVG01002051001 Vitis vinifera HOM05D001887 ORTHO05D006549 0.0e+00 1189.1 830 76.9
Nitab4.5_0004227g0030 Nicotiana tabacum HOM05D001887 ORTHO05D006549 0.0e+00 1184.9 827 77.4
TAR636G0264 Trochodendron aralioides HOM05D001887 ORTHO05D006549 0.0e+00 1181.8 832 75.5
PGSC0003DMG400026214 Solanum tuberosum HOM05D001887 ORTHO05D006549 0.0e+00 1177.5 827 76.8
Nitab4.5_0003335g0030 Nicotiana tabacum HOM05D001887 ORTHO05D006549 0.0e+00 1173.7 827 77.4
Solyc08g077800.4 Solanum lycopersicum HOM05D001887 ORTHO05D006549 0.0e+00 1169.8 827 75.8
CiPaw.11G072100 Carya illinoinensis HOM05D001887 ORTHO05D006549 0.0e+00 1168.7 832 75.1
Sopen08g026310 Solanum pennellii HOM05D001887 ORTHO05D006549 0.0e+00 1167.5 827 75.7
CAN.G572.14 Capsicum annuum HOM05D001887 ORTHO05D006549 0.0e+00 1167.1 827 76.3
Cfa012332 Carpinus fangiana HOM05D001887 ORTHO05D006549 0.0e+00 1166.4 833 75.4
QL12p008620 Quercus lobata HOM05D001887 ORTHO05D006549 0.0e+00 1159.1 831 74.6
Haze_08360 Corylus avellana HOM05D001887 ORTHO05D006549 0.0e+00 1157.9 833 74.2
TWI81G0509 Tripterygium wilfordii HOM05D001887 ORTHO05D006549 0.0e+00 1157.5 835 74.0
Ciclev10024418m.g Citrus clementina HOM05D001887 ORTHO05D006549 0.0e+00 1151.3 846 74.0
Cc08_g11250 Coffea canephora HOM05D001887 ORTHO05D006549 0.0e+00 1147.1 828 73.8
Thecc.03G239300 Theobroma cacao HOM05D001887 ORTHO05D006549 0.0e+00 1140.9 834 73.0
Glyma.11G038500 Glycine max HOM05D001887 ORTHO05D006549 0.0e+00 1137.5 832 73.1
MD06G1046600 Malus domestica HOM05D001887 ORTHO05D006549 0.0e+00 1133.2 905 69.4
AUR62007171 Chenopodium quinoa HOM05D001887 ORTHO05D006549 0.0e+00 1130.2 832 71.6
Prupe.5G054900 Prunus persica HOM05D001887 ORTHO05D006549 0.0e+00 1129.0 885 70.7
DCAR_000656 Daucus carota HOM05D001887 ORTHO05D006549 0.0e+00 1128.6 834 72.1
VMungo1215G0420 Vigna mungo HOM05D001887 ORTHO05D006549 0.0e+00 1127.1 833 72.7
Potri.001G150400 Populus trichocarpa HOM05D001887 ORTHO05D006549 0.0e+00 1122.8 834 72.8
Gorai.004G191700 Gossypium raimondii HOM05D001887 ORTHO05D006549 0.0e+00 1121.7 835 72.7
Hund14477 Selenicereus undatus HOM05D001887 ORTHO05D006549 0.0e+00 1119.8 833 73.0
Manes.01G089700 Manihot esculenta HOM05D001887 ORTHO05D006549 0.0e+00 1119.4 832 72.4
HanXRQChr01g0016001 Helianthus annuus HOM05D001887 ORTHO05D006549 0.0e+00 1117.8 834 73.3
Lj2g0012346 Lotus japonicus HOM05D001887 ORTHO05D006549 0.0e+00 1116.3 831 72.1
FvH4_5g20470 Fragaria vesca HOM05D001887 ORTHO05D006549 0.0e+00 1114.8 881 69.4
Lalb_Chr09g0324141 Lupinus albus HOM05D001887 ORTHO05D006549 0.0e+00 1114.8 831 72.4
Gohir.D08G182700 Gossypium hirsutum HOM05D001887 ORTHO05D006549 0.0e+00 1113.2 834 72.2
COL.COLO4_06683 Corchorus olitorius HOM05D001887 ORTHO05D006549 0.0e+00 1112.1 836 72.2
Ca_24613_v3 Cicer arietinum L. HOM05D001887 ORTHO05D006549 0.0e+00 1111.7 887 68.0
RcHm_v2.0_Chr7g0205791 Rosa chinensis HOM05D001887 ORTHO05D006549 0.0e+00 1109.4 882 69.4
Nn1g00744 Nelumbo nucifera HOM05D001887 ORTHO05D006549 0.0e+00 1109.0 858 70.4
CANSAT21G2194 Cannabis sativa HOM05D001887 ORTHO05D006549 0.0e+00 1108.2 833 72.3
Dinv25138 Davidia involucrata HOM05D001887 ORTHO05D006549 0.0e+00 1108.2 683 85.8
Migut.E01262 Erythranthe guttata HOM05D001887 ORTHO05D006549 0.0e+00 1107.4 827 71.1
Migut.E01632 Erythranthe guttata HOM05D001887 ORTHO05D006549 0.0e+00 1107.4 827 71.1
FAN18G1605 Fragaria x ananassa HOM05D001887 ORTHO05D006549 0.0e+00 1106.7 874 69.3
ClCG09G012670 Citrullus lanatus HOM05D001887 ORTHO05D006549 0.0e+00 1105.5 879 68.3
MBI04_g38561_MAGBIO Magnolia biondii HOM05D001887 ORTHO05D006549 0.0e+00 1105.5 868 69.7
Medtr5g013480 Medicago truncatula HOM05D001887 ORTHO05D006549 0.0e+00 1104.4 835 70.8
CsaV3_3G049790 Cucumis sativus L. HOM05D001887 ORTHO05D006549 0.0e+00 1103.6 874 68.3
Sed0013079 Sechium edule HOM05D001887 ORTHO05D006549 0.0e+00 1102.0 870 68.0
arahy.Tifrunner.gnm1.ann1.B9CQCD Arachis hypogaea HOM05D001887 ORTHO05D006549 0.0e+00 1098.6 832 71.4
arahy.Tifrunner.gnm1.ann1.HW9JRE Arachis hypogaea HOM05D001887 ORTHO05D006549 0.0e+00 1098.6 832 71.4
PGR042G1059 Punica granatum HOM05D001887 ORTHO05D006549 0.0e+00 1098.6 832 70.3
EL10Ac5g12260 Beta vulgaris HOM05D001887 ORTHO05D006549 0.0e+00 1095.5 876 68.8
ECA246G2103 Erigeron canadensis HOM05D001887 ORTHO05D006549 0.0e+00 1093.6 829 71.4
Ah.07g199260 Amaranthus hybridus HOM05D001887 ORTHO05D006549 0.0e+00 1093.2 829 71.0
SGA_v2.0_scaffold6G03161 Striga asiatica HOM05D001887 ORTHO05D006549 0.0e+00 1092.4 865 68.7
FAN13G0006 Fragaria x ananassa HOM05D001887 ORTHO05D006549 0.0e+00 1091.3 884 68.9
Lsat_1_v5_gn_3_15381 Lactuca sativa HOM05D001887 ORTHO05D006549 0.0e+00 1087.4 854 69.0
Aqoxy7G00853 Aquilegia oxysepala HOM05D001887 ORTHO05D006549 0.0e+00 1085.9 829 70.4
MELO3C003338.2 Cucumis melo HOM05D001887 ORTHO05D006549 0.0e+00 1084.7 867 67.9
Eucgr.E00349 Eucalyptus grandis HOM05D001887 ORTHO05D006549 0.0e+00 1080.9 829 71.0
PSO675G3297 Papaver somniferum HOM05D001887 ORTHO05D006549 2.1e-309 1065.4 828 69.0
THA.LOC104807928 Tarenaya hassleriana HOM05D001887 ORTHO05D006549 2.2e-306 1055.4 832 67.5
unitig_699.g19770 Utricularia gibba HOM05D001887 ORTHO05D006549 6.6e-303 1043.9 828 68.5
Duzib205G1274 Durio zibethinus HOM05D001887 ORTHO05D006549 4.3e-302 1041.2 832 68.1
Thhalv10027633m.g Eutrema salsugineum HOM05D001887 ORTHO05D006549 2.1e-301 1038.9 835 66.8
BcaC02g08980 Brassica carinata HOM05D001887 ORTHO05D006549 8.1e-301 1036.9 831 67.1
BolC4t26415H Brassica oleracea HOM05D001887 ORTHO05D006549 8.1e-301 1036.9 831 67.1
Carub.0007s3432 Capsella rubella HOM05D001887 ORTHO05D006549 1.1e-300 1036.6 834 66.8
C04p48230 Brassica napus HOM05D001887 ORTHO05D006549 1.8e-300 1035.8 831 67.1
A04p14190 Brassica napus HOM05D001887 ORTHO05D006549 2.0e-299 1032.3 833 67.5
AUR62018833 Chenopodium quinoa HOM05D001887 ORTHO05D006549 2.0e-299 1032.3 822 67.3
AL7G48280 Arabidopsis lyrata HOM05D001887 ORTHO05D006549 2.6e-299 1031.9 842 66.7
BcaB06g27602 Brassica carinata HOM05D001887 ORTHO05D006549 3.4e-299 1031.6 832 66.6
CARHR213220 Cardamine hirsuta HOM05D001887 ORTHO05D006549 9.9e-299 1030.0 834 66.5
AL7G48350 Arabidopsis lyrata HOM05D001887 ORTHO05D006549 6.4e-298 1027.3 833 67.5
BraA04t17079Z Brassica rapa HOM05D001887 ORTHO05D006549 1.1e-297 1026.5 833 66.9
AT5G41150 Arabidopsis thaliana HOM05D001887 ORTHO05D006549 3.2e-297 1025.0 835 66.2
Sp7g00750 Schrenkiella parvula HOM05D001887 ORTHO05D006549 2.1e-296 1022.3 831 66.5
SpUn0010_0230 Schrenkiella parvula HOM05D001887 ORTHO05D006549 7.8e-296 1020.4 835 66.3
Os03g0100400 Oryza sativa ssp. japonica HOM05D001887 ORTHO05D006549 3.0e-295 1018.5 842 65.3
Zm00001eb208390 Zea mays HOM05D001887 ORTHO05D006549 8.7e-295 1016.9 845 65.3
Aa31LG9G15130 Aethionema arabicum HOM05D001887 ORTHO05D006549 8.4e-290 1000.3 831 65.2
HPP92_001389 Vanilla planifolia HOM05D001887 ORTHO05D006549 4.3e-286 988.0 831 62.0
Gohir.A08G162700 Gossypium hirsutum HOM05D001887 ORTHO05D006549 1.1e-281 973.4 764 70.0
CDE02G0676 Ceratophyllum demersum HOM05D001887 ORTHO05D006549 1.6e-269 932.9 838 63.2
MSTRG.13777 Avicennia marina HOM05D001887 ORTHO05D006549 5.0e-266 921.4 827 62.9
AagrBONN_evm.TU.Sc2ySwM_344.3532 Anthoceros agrestis HOM05D001887 ORTHO05D006549 1.1e-244 850.5 853 55.2
Oeu028057.3 Olea europaea HOM05D001887 ORTHO05D006549 5.3e-244 848.2 827 60.2
Psat2g175720 Pisum sativum HOM05D001887 ORTHO05D006549 1.7e-242 843.2 677 67.7
Mapoly0007s0092 Marchantia polymorpha HOM05D001887 ORTHO05D006549 1.4e-239 833.6 919 51.7
Hma1.2p1_3159F.1_g333410 Hydrangea macrophylla HOM05D001887 ORTHO05D006549 1.3e-234 817.0 821 59.4
Pp3c18_11670 Physcomitrium patens HOM05D001887 ORTHO05D006549 9.4e-233 810.8 907 52.3
SMO118G0017 Selaginella moellendorffii HOM05D001887 ORTHO05D006549 4.7e-232 808.5 852 53.4
Phvul.002G001900 Phaseolus vulgaris HOM05D001887 ORTHO05D006549 2.6e-222 776.2 601 69.6
ATR0665G232 Amborella trichopoda HOM05D001887 ORTHO05D006549 3.6e-216 755.7 636 67.6
Sc01g0007960 Simmondsia chinensis HOM05D001887 ORTHO05D006549 4.6e-211 738.8 603 67.2
Sabra01G0120200 Salix brachista HOM05D001887 ORTHO05D006549 1.6e-208 730.3 548 71.7
SEGI_01687 Sequoiadendron giganteum HOM05D001887 ORTHO05D006549 6.4e-181 638.6 556 63.5
SalBow1G4075 Salvia bowleyana HOM05D001887 ORTHO05D006549 4.2e-180 636.0 576 61.1
MBI04_g36289_MAGBIO Magnolia biondii HOM05D001887 ORTHO05D006549 9.3e-172 608.2 825 47.8
CBR_g39228 Chara braunii HOM05D001887 ORTHO05D006549 1.0e-133 481.9 369 65.3
MCO16G346 Micromonas commoda HOM05D001887 ORTHO05D006549 1.1e-132 478.4 830 34.9
Cpa.g.c28699.1 Carica papaya HOM05D001887 ORTHO05D006549 5.7e-129 466.1 267 89.1
HPP92_012638 Vanilla planifolia HOM05D001887 ORTHO05D006549 2.2e-128 464.2 305 73.1
TPR.G31429 Trifolium pratense HOM05D001887 ORTHO05D006549 8.2e-128 462.2 508 53.9
SalBow1G0188 Salvia bowleyana HOM05D001887 ORTHO05D006549 1.5e-124 451.4 278 82.7
TPR.G31432 Trifolium pratense HOM05D001887 ORTHO05D006549 3.0e-122 443.7 277 82.7
Cfa026920 Carpinus fangiana HOM05D001887 ORTHO05D006549 8.3e-104 382.5 860 32.0
Cre06.g311400 Chlamydomonas reinhardtii HOM05D001887 ORTHO05D006549 4.3e-92 343.6 1159 28.1
HPP92_013056 Vanilla planifolia HOM05D001887 ORTHO05D006549 2.2e-88 331.3 288 59.7
PRCOL_00000830 Prasinoderma coloniale HOM05D001887 ORTHO05D006549 8.6e-85 319.3 844 29.6
SHI07797 Sapria himalayana HOM05D001887 ORTHO05D006549 5.6e-84 316.6 231 73.6
Atru.chr9.1200 Acer truncatum HOM05D001887 ORTHO05D006549 3.9e-77 293.9 175 82.3
SEGI_02234 Sequoiadendron giganteum HOM05D001887 ORTHO05D006549 1.7e-72 278.5 212 67.9
HPP92_028226 Vanilla planifolia HOM05D001887 ORTHO05D006549 3.5e-70 270.8 257 58.8
GSVIVG01002647001 Vitis vinifera HOM05D001887 ORTHO05D006549 1.1e-68 265.8 145 93.1
HPP92_027917 Vanilla planifolia HOM05D001887 ORTHO05D006549 4.3e-68 263.8 202 66.3
ATR0107G001 Amborella trichopoda HOM05D001887 ORTHO05D006549 1.2e-65 255.8 198 68.2
CBR_g69645 Chara braunii HOM05D001887 ORTHO05D006549 6.6e-61 240.0 169 65.1
Atru.chr9.1202 Acer truncatum HOM05D001887 ORTHO05D006549 8.1e-59 233.0 150 78.7
HPP92_000025 Vanilla planifolia HOM05D001887 ORTHO05D006549 2.6e-57 228.0 144 75.7
Atru.chr9.1201 Acer truncatum HOM05D001887 ORTHO05D006549 8.4e-56 223.0 252 53.2
Cpa.g.sc98.72 Carica papaya HOM05D001887 ORTHO05D006549 4.6e-54 217.2 130 80.0
HPP92_000026 Vanilla planifolia HOM05D001887 ORTHO05D006549 6.7e-53 213.4 203 59.1
HPP92_028027 Vanilla planifolia HOM05D001887 ORTHO05D006549 4.0e-50 204.1 129 76.0
Glyma.01G204533 Glycine max HOM05D001887 ORTHO05D006549 2.2e-48 198.4 105 94.3
Sed0025805 Sechium edule HOM05D001887 ORTHO05D006549 3.8e-48 197.6 214 56.1
HPP92_028028 Vanilla planifolia HOM05D001887 ORTHO05D006549 6.4e-48 196.8 131 73.3
HPP92_002782 Vanilla planifolia HOM05D001887 ORTHO05D006549 8.4e-48 196.4 129 73.6
Atru.chr9.1203 Acer truncatum HOM05D001887 ORTHO05D006549 1.3e-43 182.6 98 91.8
Psat5g084960 Pisum sativum HOM05D001887 ORTHO05D006549 4.9e-40 170.6 161 58.4
MD04G1054800 Malus domestica HOM05D001887 ORTHO05D006549 4.2e-39 167.5 122 72.1
HPP92_028029 Vanilla planifolia HOM05D001887 ORTHO05D006549 4.5e-33 147.5 109 67.9
AagrBONN_evm.TU.Sc2ySwM_362.220 Anthoceros agrestis HOM05D001887 ORTHO05D006549 3.3e-28 131.3 85 71.8
Psat5g140400 Pisum sativum HOM05D001887 ORTHO05D006549 1.8e-26 125.6 75 77.3
Psat0s3354g0040 Pisum sativum HOM05D001887 ORTHO05D006549 1.0e-21 109.8 139 48.2
Psat3g155360 Pisum sativum HOM05D000527 ORTHO05D325619 1.8e-21 109.0 85 61.2
Psat4g195160 Pisum sativum HOM05D000527 ORTHO05D000559 1.1e-20 106.3 64 75.0
CDE11G1156 Ceratophyllum demersum HOM05D001409 ORTHO05D129850 1.6e-14 85.9 42 95.2
AagrBONN_evm.TU.Sc2ySwM_362.221 Anthoceros agrestis HOM05D001887 ORTHO05D070959 3.6e-06 58.2 59 49.2


User provided reference genes

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