Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023446 Camellia sinensis var. sinensis HOM05D006873 ORTHO05D008668 4.0e-227 791.2 428 100.0
CSS0006883 Camellia sinensis var. sinensis HOM05D006873 ORTHO05D008668 9.2e-224 780.0 428 99.3
Actinidia15007 Actinidia chinensis HOM05D006873 ORTHO05D008668 9.2e-123 444.5 437 63.6
Manes.05G090700 Manihot esculenta HOM05D006873 ORTHO05D008668 4.3e-88 329.3 389 53.5
vmacro16278 Vaccinium macrocarpon HOM05D006873 ORTHO05D008668 6.2e-87 325.5 396 50.5
Haze_12141 Corylus avellana HOM05D006873 ORTHO05D008668 1.8e-86 323.9 483 48.4
Nn3g16974 Nelumbo nucifera HOM05D006873 ORTHO05D008668 2.4e-86 323.6 445 47.0
Cfa009104 Carpinus fangiana HOM05D006873 ORTHO05D008668 9.0e-86 321.6 475 51.2
Atru.chr11.1966 Acer truncatum HOM05D006873 ORTHO05D008668 4.9e-84 315.8 326 56.1
Rhsim12G0124200 Rhododendron simsii HOM05D006873 ORTHO05D008668 4.9e-84 315.8 390 50.8
CiPaw.06G074700 Carya illinoinensis HOM05D006873 ORTHO05D008668 1.4e-83 314.3 474 48.3
DCAR_026551 Daucus carota HOM05D006873 ORTHO05D008668 6.0e-82 308.9 429 51.0
MSTRG.7876 Avicennia marina HOM05D006873 ORTHO05D008668 2.5e-80 303.5 432 45.1
Nitab4.5_0009368g0020 Nicotiana tabacum HOM05D006873 ORTHO05D008668 2.8e-79 300.1 440 48.4
Dinv31000 Davidia involucrata HOM05D006873 ORTHO05D008668 1.4e-78 297.7 319 57.7
Dinv31103 Davidia involucrata HOM05D006873 ORTHO05D008668 1.4e-78 297.7 319 57.7
Nitab4.5_0000257g0240 Nicotiana tabacum HOM05D006873 ORTHO05D008668 2.4e-78 297.0 424 50.0
CANSAT01G2194 Cannabis sativa HOM05D006873 ORTHO05D008668 5.3e-78 295.8 451 46.1
Ciclev10031560m.g Citrus clementina HOM05D006873 ORTHO05D008668 2.6e-77 293.5 411 48.9
PGR119G2095 Punica granatum HOM05D006873 ORTHO05D008668 4.5e-77 292.7 396 46.7
Cpa.g.sc5.353 Carica papaya HOM05D006873 ORTHO05D008668 1.7e-76 290.8 387 49.9
SalBow2G2439 Salvia bowleyana HOM05D006873 ORTHO05D008668 2.2e-76 290.4 433 43.6
SalBow2G2215 Salvia bowleyana HOM05D006873 ORTHO05D008668 8.4e-76 288.5 433 43.4
Potri.008G146700 Populus trichocarpa HOM05D006873 ORTHO05D008668 2.3e-73 280.4 341 52.5
Thecc.02G242900 Theobroma cacao HOM05D006873 ORTHO05D008668 5.1e-73 279.3 445 42.7
TAR622G0254 Trochodendron aralioides HOM05D006873 ORTHO05D008668 6.7e-73 278.9 438 49.5
Duzib248G0774 Durio zibethinus HOM05D006873 ORTHO05D008668 8.7e-73 278.5 455 43.5
Solyc05g006070.4 Solanum lycopersicum HOM05D006873 ORTHO05D008668 1.5e-72 277.7 429 46.4
QL03p062447 Quercus lobata HOM05D006873 ORTHO05D008668 4.3e-72 276.2 352 50.6
PGSC0003DMG400015575 Solanum tuberosum HOM05D006873 ORTHO05D008668 1.6e-71 274.2 432 42.4
Sopen05g002090 Solanum pennellii HOM05D006873 ORTHO05D008668 2.1e-71 273.9 432 46.3
SGA_v2.0_scaffold166G38344 Striga asiatica HOM05D006873 ORTHO05D008668 7.6e-69 265.4 452 39.4
Gohir.A08G123000 Gossypium hirsutum HOM05D006873 ORTHO05D008668 2.2e-68 263.8 431 41.8
Peaxi162Scf00421g00062 Petunia axillaris HOM05D006873 ORTHO05D008668 6.5e-68 262.3 432 44.7
Aqoxy3G03077 Aquilegia oxysepala HOM05D006873 ORTHO05D008668 8.4e-68 261.9 498 41.4
Lj2g0015184 Lotus japonicus HOM05D006873 ORTHO05D008668 1.1e-67 261.5 340 48.5
Gorai.004G149100 Gossypium raimondii HOM05D006873 ORTHO05D008668 9.3e-67 258.5 470 40.0
PSO832G2329 Papaver somniferum HOM05D006873 ORTHO05D008668 9.3e-67 258.5 421 41.6
Gohir.D08G144400 Gossypium hirsutum HOM05D006873 ORTHO05D008668 2.1e-66 257.3 470 41.1
Sabra08G0111700 Salix brachista HOM05D006873 ORTHO05D008668 2.1e-66 257.3 334 49.7
GSVIVG01020168001 Vitis vinifera HOM05D006873 ORTHO05D008668 3.5e-66 256.5 295 51.9
Phvul.002G074900 Phaseolus vulgaris HOM05D006873 ORTHO05D008668 4.6e-66 256.1 445 40.4
Prupe.1G259500 Prunus persica HOM05D006873 ORTHO05D008668 6.1e-66 255.8 519 39.1
TWI18G0196 Tripterygium wilfordii HOM05D006873 ORTHO05D008668 2.3e-65 253.8 402 43.3
ECA234G0329 Erigeron canadensis HOM05D000967 ORTHO05D000796 1.5e-64 251.1 325 49.5
Glyma.02G030100 Glycine max HOM05D006873 ORTHO05D008668 1.5e-64 251.1 337 47.2
VMungo1215G0960 Vigna mungo HOM05D006873 ORTHO05D008668 1.5e-64 251.1 453 42.4
PSO063G4822 Papaver somniferum HOM05D006873 ORTHO05D008668 1.9e-64 250.8 423 41.4
Lsat_1_v5_gn_8_160241 Lactuca sativa HOM05D006873 ORTHO05D008668 3.3e-64 250.0 329 48.0
Cc11_g14280 Coffea canephora HOM05D006873 ORTHO05D008668 5.7e-64 249.2 319 47.3
Glyma.01G035700 Glycine max HOM05D006873 ORTHO05D008668 1.3e-63 248.1 339 46.0
COL.COLO4_37899 Corchorus olitorius HOM05D006873 ORTHO05D008668 6.3e-63 245.7 289 50.2
TPR.G13500 Trifolium pratense HOM05D006873 ORTHO05D008668 9.0e-62 241.9 331 46.2
Sc11g0001350 Simmondsia chinensis HOM05D006873 ORTHO05D008668 1.2e-61 241.5 320 45.9
HanXRQChr08g0209031 Helianthus annuus HOM05D006873 ORTHO05D008668 2.6e-61 240.4 324 46.6
ClCG09G020710 Citrullus lanatus HOM05D006873 ORTHO05D008668 4.5e-61 239.6 341 46.6
MELO3C002912.2 Cucumis melo HOM05D006873 ORTHO05D008668 5.9e-61 239.2 404 44.8
Lalb_Chr05g0217211 Lupinus albus HOM05D006873 ORTHO05D008668 7.7e-61 238.8 350 43.4
Eucgr.B02558 Eucalyptus grandis HOM05D006873 ORTHO05D008668 1.3e-60 238.0 341 46.3
Migut.L01442 Erythranthe guttata HOM05D006873 ORTHO05D008668 1.7e-60 237.7 508 38.2
MD16G1087500 Malus domestica HOM05D006873 ORTHO05D008668 2.5e-59 233.8 413 42.1
arahy.Tifrunner.gnm1.ann1.MXA56B Arachis hypogaea HOM05D006873 ORTHO05D008668 7.2e-59 232.3 395 39.5
Medtr5g035330 Medicago truncatula HOM05D006873 ORTHO05D008668 1.2e-58 231.5 329 44.4
unitig_26.g10334 Utricularia gibba HOM05D006873 ORTHO05D008668 2.1e-58 230.7 421 43.7
Ca_04627_v3 Cicer arietinum L. HOM05D006873 ORTHO05D008668 6.7e-57 225.7 324 46.0
THA.LOC104823082 Tarenaya hassleriana HOM05D006873 ORTHO05D008668 6.7e-57 225.7 412 39.6
arahy.Tifrunner.gnm1.ann1.8WMT1Z Arachis hypogaea HOM05D006873 ORTHO05D008668 3.3e-56 223.4 429 37.5
arahy.Tifrunner.gnm1.ann1.RPT3RX Arachis hypogaea HOM05D006873 ORTHO05D009096 5.7e-56 222.6 425 37.2
FAN07G2203 Fragaria x ananassa HOM05D006873 ORTHO05D008668 7.4e-56 222.2 572 33.9
Sp5g25330 Schrenkiella parvula HOM05D006873 ORTHO05D008668 1.4e-54 218.0 530 37.0
Sed0022830 Sechium edule HOM05D006873 ORTHO05D008668 1.4e-54 218.0 340 42.1
Oeu001659.1 Olea europaea HOM05D006873 ORTHO05D008668 4.1e-54 216.5 248 52.4
Hund25317 Selenicereus undatus HOM05D006873 ORTHO05D008668 4.1e-54 216.5 329 43.5
CDE07G1306 Ceratophyllum demersum HOM05D005206 ORTHO05D006219 2.0e-53 214.2 330 43.3
FvH4_4g34980 Fragaria vesca HOM05D006873 ORTHO05D008668 4.5e-53 213.0 565 34.3
Thhalv10018395m.g Eutrema salsugineum HOM05D006873 ORTHO05D008668 2.2e-52 210.7 411 38.7
arahy.Tifrunner.gnm1.ann1.N2BTYN Arachis hypogaea HOM05D006873 ORTHO05D008668 2.9e-52 210.3 429 36.4
AUR62020959 Chenopodium quinoa HOM05D006873 ORTHO05D008668 3.8e-52 209.9 341 43.1
FAN22G1812 Fragaria x ananassa HOM05D006873 ORTHO05D008668 3.8e-52 209.9 573 33.2
EL10Ac6g13256 Beta vulgaris HOM05D006873 ORTHO05D008668 8.5e-52 208.8 445 38.7
RcHm_v2.0_Chr4g0444501 Rosa chinensis HOM05D006873 ORTHO05D008668 8.5e-52 208.8 443 37.5
CARHR063320 Cardamine hirsuta HOM05D006873 ORTHO05D008668 1.1e-51 208.4 487 35.5
FAN17G1454 Fragaria x ananassa HOM05D006873 ORTHO05D008668 4.2e-51 206.5 576 34.5
Carub.0002s1690 Capsella rubella HOM05D006873 ORTHO05D008668 5.5e-51 206.1 427 36.8
A07p31180 Brassica napus HOM05D006873 ORTHO05D008668 1.6e-50 204.5 415 37.1
BraA07t30751Z Brassica rapa HOM05D006873 ORTHO05D008668 1.6e-50 204.5 414 38.4
ATR1149G030 Amborella trichopoda HOM05D006873 ORTHO05D008668 2.3e-49 200.7 327 42.2
Aa31LG4G10700 Aethionema arabicum HOM05D006873 ORTHO05D008668 5.1e-49 199.5 535 36.1
BcaB03g15534 Brassica carinata HOM05D006873 ORTHO05D008668 2.0e-48 197.6 426 35.4
C06p36230 Brassica napus HOM05D006873 ORTHO05D008668 2.0e-48 197.6 421 37.3
AL2G29500 Arabidopsis lyrata HOM05D006873 ORTHO05D008668 2.6e-48 197.2 430 36.0
AT1G70200 Arabidopsis thaliana HOM05D006873 ORTHO05D008668 2.6e-48 197.2 435 36.1
BcaC08g45836 Brassica carinata HOM05D006873 ORTHO05D008668 2.6e-48 197.2 420 37.4
BolC6t38744H Brassica oleracea HOM05D006873 ORTHO05D008668 1.7e-47 194.5 422 37.2
Psat2g111440 Pisum sativum HOM05D006873 ORTHO05D008668 2.3e-41 174.1 232 52.2
MBI15_g12637_MAGBIO Magnolia biondii HOM05D006873 ORTHO05D008668 1.5e-40 171.4 270 45.2
Ah.04g149970 Amaranthus hybridus HOM05D006873 ORTHO05D008668 3.3e-40 170.2 420 37.4
HPP92_005898 Vanilla planifolia HOM05D006873 ORTHO05D008668 4.8e-39 166.4 329 35.3
CsaV3_5G025700 Cucumis sativus L. HOM05D006873 ORTHO05D008668 1.8e-38 164.5 268 41.8
CDE04G1917 Ceratophyllum demersum HOM05D000231 ORTHO05D008668 7.7e-37 159.1 309 38.5
SEGI_33585 Sequoiadendron giganteum HOM05D006873 ORTHO05D008668 8.0e-34 149.1 156 50.0
Os02g0326200 Oryza sativa ssp. japonica HOM05D006873 ORTHO05D008668 3.4e-32 143.7 164 48.2
Mapoly0001s0497 Marchantia polymorpha HOM05D006873 ORTHO05D008668 1.3e-31 141.7 173 41.0
Zm00001eb234150 Zea mays HOM05D006873 ORTHO05D008668 1.4e-30 138.3 159 47.8
AagrBONN_evm.TU.Sc2ySwM_362.2365 Anthoceros agrestis HOM05D006873 ORTHO05D008668 4.7e-26 123.2 301 32.2
Pp3c1_41900 Physcomitrium patens HOM05D006873 ORTHO05D008668 6.1e-26 122.9 323 30.3
CBR_g81555 Chara braunii HOM05D006873 ORTHO05D000353 2.3e-25 120.9 228 34.6
Duzib251G0321 Durio zibethinus HOM05D006873 ORTHO05D008668 1.2e-24 118.6 139 46.8
SMO146G0062 Selaginella moellendorffii HOM05D006873 ORTHO05D008668 1.5e-24 118.2 190 37.4
Oeu001660.1 Olea europaea HOM05D006873 ORTHO05D008668 7.7e-21 105.9 121 47.9
AUR62018459 Chenopodium quinoa HOM05D000676 ORTHO05D001458 3.6e-18 97.1 65 66.2
CsaV3_5G025690 Cucumis sativus L. HOM05D006873 ORTHO05D008668 5.4e-14 83.2 68 58.8
CsaV3_5G025680 Cucumis sativus L. HOM05D006873 ORTHO05D008668 4.6e-13 80.1 68 57.4
Ah.13g077500 Amaranthus hybridus HOM05D006873 ORTHO05D008668 1.6e-10 71.6 52 59.6
vmacro16295 Vaccinium macrocarpon HOM05D006873 ORTHO05D008668 1.4e-09 68.6 139 41.0
GSVIVG01020169001 Vitis vinifera HOM05D006873 ORTHO05D008668 5.4e-06 56.6 85 41.2


User provided reference genes

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