Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022266 Camellia sinensis var. sinensis HOM05D001364 ORTHO05D001316 6.5e-25 116.7 63 100.0
CSS0040896 Camellia sinensis var. sinensis HOM05D001364 ORTHO05D001316 8.7e-22 106.3 62 91.9
Actinidia07772 Actinidia chinensis HOM05D001364 ORTHO05D001316 1.2e-18 95.9 62 79.0
Actinidia31760 Actinidia chinensis HOM05D001364 ORTHO05D001316 5.9e-18 93.6 62 79.0
Dinv21888 Davidia involucrata HOM05D001364 ORTHO05D001316 2.2e-17 91.7 58 81.0
Actinidia13624 Actinidia chinensis HOM05D001569 ORTHO05D001316 3.8e-17 90.9 62 79.0
Hma1.2p1_0502F.1_g167970 Hydrangea macrophylla HOM05D001364 ORTHO05D001316 2.5e-16 88.2 59 74.6
TAR310G0002 Trochodendron aralioides HOM05D001364 ORTHO05D001316 5.5e-16 87.0 62 77.4
CiPaw.08G042900 Carya illinoinensis HOM05D001364 ORTHO05D001316 7.2e-16 86.7 66 77.3
Lsat_1_v5_gn_8_11560 Lactuca sativa HOM05D001364 ORTHO05D001316 2.1e-15 85.1 62 74.2
CSS0033865 Camellia sinensis var. sinensis HOM05D001364 ORTHO05D001316 2.7e-15 84.7 57 75.4
CiPaw.07G182700 Carya illinoinensis HOM05D001364 ORTHO05D001316 1.8e-14 82.0 66 71.2
DCAR_014649 Daucus carota HOM05D001364 ORTHO05D001316 2.3e-14 81.6 59 72.9
Lsat_1_v5_gn_9_58420 Lactuca sativa HOM05D001364 ORTHO05D001316 6.7e-14 80.1 61 72.1
Potri.015G110800 Populus trichocarpa HOM05D001364 ORTHO05D001316 8.7e-14 79.7 63 73.0
DCAR_014648 Daucus carota HOM05D001364 ORTHO05D001316 1.5e-13 79.0 59 69.5
TWI39G0945 Tripterygium wilfordii HOM05D001364 ORTHO05D001316 1.5e-13 79.0 63 71.4
vmacro06855 Vaccinium macrocarpon HOM05D001364 ORTHO05D001316 1.9e-13 78.6 62 72.6
Dinv15400 Davidia involucrata HOM05D000280 ORTHO05D004091 2.5e-13 78.2 59 71.2
Dinv34525 Davidia involucrata HOM05D001364 ORTHO05D001316 3.3e-13 77.8 64 68.8
HanXRQChr09g0252391 Helianthus annuus HOM05D001364 ORTHO05D001316 3.3e-13 77.8 61 70.5
Dinv04155 Davidia involucrata HOM05D001364 ORTHO05D001316 7.4e-13 76.6 59 69.5
HanXRQChr11g0324731 Helianthus annuus HOM05D001364 ORTHO05D001316 9.7e-13 76.3 62 67.7
CSS0034298 Camellia sinensis var. sinensis HOM05D001364 ORTHO05D001316 1.3e-12 75.9 62 69.4
Potri.012G115100 Populus trichocarpa HOM05D001364 ORTHO05D001316 1.6e-12 75.5 56 78.6
ECA233G4573 Erigeron canadensis HOM05D001364 ORTHO05D001316 2.8e-12 74.7 61 65.6
Nn1g00751 Nelumbo nucifera HOM05D001364 ORTHO05D001316 2.8e-12 74.7 72 61.1
Nn6g33755 Nelumbo nucifera HOM05D001364 ORTHO05D001316 2.8e-12 74.7 54 74.1
Sabra15G0132600 Salix brachista HOM05D001364 ORTHO05D001316 3.7e-12 74.3 56 76.8
GSVIVG01024485001 Vitis vinifera HOM05D001364 ORTHO05D001316 4.8e-12 73.9 67 64.2
TWI23G0572 Tripterygium wilfordii HOM05D001364 ORTHO05D001316 8.2e-12 73.2 63 68.3
TAR636G1484 Trochodendron aralioides HOM05D001364 ORTHO05D001316 8.2e-12 73.2 60 68.3
COL.COLO4_37303 Corchorus olitorius HOM05D001364 ORTHO05D001316 1.1e-11 72.8 72 61.1
HanXRQChr08g0223351 Helianthus annuus HOM05D001364 ORTHO05D001316 1.1e-11 72.8 61 65.6
Sabra12G0082600 Salix brachista HOM05D001364 ORTHO05D001316 1.1e-11 72.8 56 75.0
TAR374G0408 Trochodendron aralioides HOM05D001364 ORTHO05D001316 1.1e-11 72.8 61 65.6
Hma1.2p1_1014F.1_g247860 Hydrangea macrophylla HOM05D001364 ORTHO05D001316 1.4e-11 72.4 64 64.1
Thecc.03G145000 Theobroma cacao HOM05D001364 ORTHO05D001316 1.4e-11 72.4 72 62.5
Aqoxy3G02645 Aquilegia oxysepala HOM05D001364 ORTHO05D001316 2.4e-11 71.6 63 71.4
TAR629G1498 Trochodendron aralioides HOM05D001364 ORTHO05D001316 3.1e-11 71.2 63 65.1
ClCG07G017210 Citrullus lanatus HOM05D001364 ORTHO05D001316 4.1e-11 70.9 65 63.1
CSS0047671 Camellia sinensis var. sinensis HOM05D001364 ORTHO05D001316 5.3e-11 70.5 47 76.6
CDE04G3670 Ceratophyllum demersum HOM05D001364 ORTHO05D001316 5.3e-11 70.5 55 70.9
Manes.06G129500 Manihot esculenta HOM05D001364 ORTHO05D001316 5.3e-11 70.5 63 60.3
Gohir.D03G104700 Gossypium hirsutum HOM05D001364 ORTHO05D001316 6.9e-11 70.1 72 59.7
Gorai.003G110600 Gossypium raimondii HOM05D001364 ORTHO05D001316 6.9e-11 70.1 72 59.7
Gohir.A03G061300 Gossypium hirsutum HOM05D001364 ORTHO05D001316 9.1e-11 69.7 72 59.7
QL09p027326 Quercus lobata HOM05D001364 ORTHO05D001316 2.0e-10 68.6 60 68.3
PSO063G3935 Papaver somniferum HOM05D001364 ORTHO05D001316 2.6e-10 68.2 55 67.3
PSO782G2358 Papaver somniferum HOM05D001364 ORTHO05D001316 2.6e-10 68.2 55 67.3
ATR0665G544 Amborella trichopoda HOM05D001364 ORTHO05D001316 4.5e-10 67.4 53 66.0
Gohir.A12G195600 Gossypium hirsutum HOM05D001364 ORTHO05D001316 4.5e-10 67.4 71 57.7
Gohir.D12G198400 Gossypium hirsutum HOM05D001364 ORTHO05D001316 4.5e-10 67.4 71 57.7
Gorai.008G213100 Gossypium raimondii HOM05D001364 ORTHO05D001316 4.5e-10 67.4 71 57.7
Duzib084G0961 Durio zibethinus HOM05D001364 ORTHO05D001316 5.9e-10 67.0 69 60.9
Gohir.A07G044900 Gossypium hirsutum HOM05D001364 ORTHO05D001316 5.9e-10 67.0 70 58.6
MBI04_g13863_MAGBIO Magnolia biondii HOM05D001364 ORTHO05D001316 7.7e-10 66.6 60 58.3
Actinidia31654 Actinidia chinensis HOM05D001364 ORTHO05D001316 1.0e-09 66.2 62 62.9
Sed0012421 Sechium edule HOM05D001364 ORTHO05D007168 1.3e-09 65.9 63 61.9
MELO3C017625.2 Cucumis melo HOM05D001364 ORTHO05D001316 1.7e-09 65.5 61 62.3
Gorai.001G052500 Gossypium raimondii HOM05D001364 ORTHO05D001316 2.9e-09 64.7 70 57.1
Solyc03g094090.3 Solanum lycopersicum HOM05D001364 ORTHO05D001316 2.9e-09 64.7 61 62.3
Sopen03g024950 Solanum pennellii HOM05D001364 ORTHO05D001316 2.9e-09 64.7 61 62.3
CsaV3_4G004410 Cucumis sativus L. HOM05D001364 ORTHO05D001316 3.8e-09 64.3 61 60.7
Gohir.D07G049400 Gossypium hirsutum HOM05D001364 ORTHO05D001316 5.0e-09 63.9 70 57.1
A02p43440 Brassica napus HOM05D001364 ORTHO05D017670 6.5e-09 63.5 57 57.9
A02p43810 Brassica napus HOM05D001364 ORTHO05D001316 6.5e-09 63.5 57 57.9
BraA02t09269Z Brassica rapa HOM05D001364 ORTHO05D017670 6.5e-09 63.5 57 57.9
Dinv26365 Davidia involucrata HOM05D000280 ORTHO05D004091 8.5e-09 63.2 59 62.7
Psat7g056840 Pisum sativum HOM05D001364 ORTHO05D001316 1.1e-08 62.8 56 53.6
BolC2t12463H Brassica oleracea HOM05D001364 ORTHO05D001316 1.4e-08 62.4 57 56.1
BcaC03g18321 Brassica carinata HOM05D001364 ORTHO05D001316 1.9e-08 62.0 57 56.1
BcaC03g18341 Brassica carinata HOM05D001364 ORTHO05D001316 1.9e-08 62.0 57 56.1
C02p63970 Brassica napus HOM05D001364 ORTHO05D001316 1.9e-08 62.0 57 56.1
C02p64200 Brassica napus HOM05D001364 ORTHO05D001316 1.9e-08 62.0 57 56.1
Cpa.g.sc13.217 Carica papaya HOM05D001364 ORTHO05D001316 2.5e-08 61.6 75 50.7
Ca_17755_v3 Cicer arietinum L. HOM05D001364 ORTHO05D001316 5.5e-08 60.5 61 52.5
TWI77G0568 Tripterygium wilfordii HOM05D001364 ORTHO05D001316 5.5e-08 60.5 61 57.4
arahy.Tifrunner.gnm1.ann1.A3Z183 Arachis hypogaea HOM05D001364 ORTHO05D001316 1.2e-07 59.3 57 56.1
arahy.Tifrunner.gnm1.ann1.XUU5QY Arachis hypogaea HOM05D001364 ORTHO05D001316 1.2e-07 59.3 57 56.1
Nn1g05423 Nelumbo nucifera HOM05D001364 ORTHO05D001316 1.2e-07 59.3 61 54.1
Glyma.08G133900 Glycine max HOM05D001364 ORTHO05D001316 1.6e-07 58.9 62 53.2
Prupe.2G269600 Prunus persica HOM05D001364 ORTHO05D001316 1.6e-07 58.9 65 58.5
RcHm_v2.0_Chr1g0373171 Rosa chinensis HOM05D001364 ORTHO05D001316 1.6e-07 58.9 63 54.0
BcaC01g06100 Brassica carinata HOM05D001364 ORTHO05D001316 2.1e-07 58.5 68 57.4
Aa31LG3G7630 Aethionema arabicum HOM05D001364 ORTHO05D001316 2.7e-07 58.2 62 58.1
MD00G1037000 Malus domestica HOM05D001364 ORTHO05D001316 2.7e-07 58.2 62 51.6
CARHR256950 Cardamine hirsuta HOM05D001364 ORTHO05D001316 3.6e-07 57.8 69 53.6
FvH4_7g26520 Fragaria vesca HOM05D001364 ORTHO05D001316 3.6e-07 57.8 65 58.5
FAN03G1271 Fragaria x ananassa HOM05D001364 ORTHO05D001316 3.6e-07 57.8 65 58.5
FAN06G0092 Fragaria x ananassa HOM05D001364 ORTHO05D001316 3.6e-07 57.8 65 58.5
FAN10G2134 Fragaria x ananassa HOM05D001364 ORTHO05D001316 3.6e-07 57.8 65 58.5
CANSAT56G1687 Cannabis sativa HOM05D001364 ORTHO05D001316 4.6e-07 57.4 62 54.8
Glyma.05G176400 Glycine max HOM05D001364 ORTHO05D001316 4.6e-07 57.4 57 52.6
Manes.14G041500 Manihot esculenta HOM05D001364 ORTHO05D001316 4.6e-07 57.4 63 57.1
Sp6g13310 Schrenkiella parvula HOM05D001364 ORTHO05D001316 4.6e-07 57.4 69 55.1
BcaC01g06074 Brassica carinata HOM05D001364 ORTHO05D001316 6.1e-07 57.0 68 55.9
A03p16310 Brassica napus HOM05D001364 ORTHO05D001316 6.1e-07 57.0 68 55.9
C03p19200 Brassica napus HOM05D001364 ORTHO05D001316 6.1e-07 57.0 68 55.9
BolC3t14307H Brassica oleracea HOM05D005383 ORTHO05D006722 6.1e-07 57.0 68 55.9
BraA03t10922Z Brassica rapa HOM05D001364 ORTHO05D001316 6.1e-07 57.0 68 55.9
Carub.0008s1116 Capsella rubella HOM05D001364 ORTHO05D001316 6.1e-07 57.0 69 55.1
Thhalv10014588m.g Eutrema salsugineum HOM05D001364 ORTHO05D001316 6.1e-07 57.0 69 55.1
FAN01G3060 Fragaria x ananassa HOM05D001364 ORTHO05D001316 6.1e-07 57.0 65 58.5
Sed0024501 Sechium edule HOM05D001364 ORTHO05D001316 6.1e-07 57.0 64 48.4
SGA_v2.0_scaffold60G20852 Striga asiatica HOM05D001364 ORTHO05D001316 6.1e-07 57.0 60 58.3
TPR.G7464 Trifolium pratense HOM05D001364 ORTHO05D001316 6.1e-07 57.0 56 53.6
VMungo0251G1244 Vigna mungo HOM05D001364 ORTHO05D001316 6.1e-07 57.0 57 54.4
COL.COLO4_27278 Corchorus olitorius HOM05D001364 ORTHO05D001316 7.9e-07 56.6 62 51.6
Eucgr.A02940 Eucalyptus grandis HOM05D001364 ORTHO05D001316 7.9e-07 56.6 75 46.7
Carub.0008s2613 Capsella rubella HOM05D001364 ORTHO05D001316 1.4e-06 55.8 62 50.0
Migut.F00545 Erythranthe guttata HOM05D001364 ORTHO05D001316 1.4e-06 55.8 65 53.8
Nitab4.5_0000103g0190 Nicotiana tabacum HOM05D001364 ORTHO05D001316 1.4e-06 55.8 56 57.1
Nitab4.5_0003429g0060 Nicotiana tabacum HOM05D001364 ORTHO05D001316 1.4e-06 55.8 56 57.1
Oeu044166.2 Olea europaea HOM05D001364 ORTHO05D001316 1.4e-06 55.8 58 55.2
Atru.chr6.1972 Acer truncatum HOM05D001364 ORTHO05D001316 1.8e-06 55.5 68 54.4
HanXRQChr04g0117461 Helianthus annuus HOM05D001364 ORTHO05D001316 1.8e-06 55.5 57 52.6
Nitab4.5_0005282g0030 Nicotiana tabacum HOM05D001364 ORTHO05D001316 1.8e-06 55.5 57 52.6
Nitab4.5_0007452g0020 Nicotiana tabacum HOM05D001364 ORTHO05D001316 1.8e-06 55.5 57 52.6
PGSC0003DMG400016798 Solanum tuberosum HOM05D001364 ORTHO05D001316 1.8e-06 55.5 56 55.4
BcaC03g14624 Brassica carinata HOM05D001364 ORTHO05D001316 2.3e-06 55.1 73 50.7
C02p20590 Brassica napus HOM05D001364 ORTHO05D001316 2.3e-06 55.1 73 50.7
BolC2t08196H Brassica oleracea HOM05D001364 ORTHO05D001316 2.3e-06 55.1 73 50.7
Psat6g134520 Pisum sativum HOM05D001364 ORTHO05D001316 2.3e-06 55.1 62 53.2
TPR.G18549 Trifolium pratense HOM05D001364 ORTHO05D001316 2.3e-06 55.1 63 50.8
HPP92_014389 Vanilla planifolia HOM05D001364 ORTHO05D001316 2.3e-06 55.1 62 51.6
Thhalv10014635m.g Eutrema salsugineum HOM05D001364 ORTHO05D001316 3.0e-06 54.7 60 51.7
Medtr1g073000 Medicago truncatula HOM05D001364 ORTHO05D001316 3.0e-06 54.7 63 50.8
THA.LOC104814766 Tarenaya hassleriana HOM05D001364 ORTHO05D001316 3.0e-06 54.7 61 59.0
Aa31LG1G16700 Aethionema arabicum HOM05D001364 ORTHO05D001316 3.9e-06 54.3 62 50.0
CARHR202950 Cardamine hirsuta HOM05D001364 ORTHO05D001316 3.9e-06 54.3 60 51.7
CDE12G0952 Ceratophyllum demersum HOM05D001364 ORTHO05D001316 3.9e-06 54.3 45 62.2
MD01G1174000 Malus domestica HOM05D001364 ORTHO05D001316 3.9e-06 54.3 66 50.0
Oeu015885.1 Olea europaea HOM05D001364 ORTHO05D001316 3.9e-06 54.3 61 55.7
PGR042G0768 Punica granatum HOM05D001364 ORTHO05D001316 3.9e-06 54.3 77 46.8
Sp2g28360 Schrenkiella parvula HOM05D001364 ORTHO05D001316 3.9e-06 54.3 62 51.6
Zm00001eb255450 Zea mays HOM05D001364 ORTHO05D001316 3.9e-06 54.3 57 49.1
AL8G42820 Arabidopsis lyrata HOM05D001364 ORTHO05D001316 5.1e-06 53.9 62 50.0
AT5G65260 Arabidopsis thaliana HOM05D001364 ORTHO05D001316 5.1e-06 53.9 62 50.0
MSTRG.27234 Avicennia marina HOM05D001364 ORTHO05D001316 5.1e-06 53.9 58 55.2
MD07G1240900 Malus domestica HOM05D001364 ORTHO05D001316 5.1e-06 53.9 65 50.8
Duzib187G0072 Durio zibethinus HOM05D001364 ORTHO05D001316 6.7e-06 53.5 62 50.0
PGR004G2141 Punica granatum HOM05D001364 ORTHO05D001316 6.7e-06 53.5 64 51.6
HPP92_025434 Vanilla planifolia HOM05D001364 ORTHO05D001316 6.7e-06 53.5 67 52.2
Lj8A49G36 Lonicera japonica HOM05D001364 ORTHO05D001316 8.8e-06 53.1 41 70.7
Os02g0757900 Oryza sativa ssp. japonica HOM05D001364 ORTHO05D001316 8.8e-06 53.1 57 49.1
Sabra07G0078900 Salix brachista HOM05D001364 ORTHO05D001316 8.8e-06 53.1 61 55.7
Sopen05g029970 Solanum pennellii HOM05D001364 ORTHO05D001316 8.8e-06 53.1 56 53.6
unitig_0.g2515 Utricularia gibba HOM05D001364 ORTHO05D001316 8.8e-06 53.1 57 52.6


User provided reference genes

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