Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021105 Camellia sinensis var. sinensis HOM05D004511 ORTHO05D005348 1.0e-57 226.5 109 100.0
CSS0010114 Camellia sinensis var. sinensis HOM05D004511 ORTHO05D005348 8.8e-46 186.8 89 100.0
Dinv29796 Davidia involucrata HOM05D004511 ORTHO05D005348 3.0e-30 135.2 79 75.9
Actinidia27093 Actinidia chinensis HOM05D004511 ORTHO05D005348 3.4e-29 131.7 87 71.3
TAR365G1143 Trochodendron aralioides HOM05D004511 ORTHO05D005348 1.7e-25 119.4 77 68.8
Rhsim04G0171100 Rhododendron simsii HOM05D004511 ORTHO05D005348 2.3e-25 119.0 78 69.2
Aqoxy5G00136 Aquilegia oxysepala HOM05D004511 ORTHO05D005348 1.6e-23 112.8 75 66.7
Thecc.04G266800 Theobroma cacao HOM05D004511 ORTHO05D005348 6.1e-23 110.9 78 62.8
arahy.Tifrunner.gnm1.ann1.QET6JI Arachis hypogaea HOM05D004511 ORTHO05D005348 8.0e-23 110.5 78 64.1
Lj6g0021678 Lotus japonicus HOM05D004511 ORTHO05D005348 8.0e-23 110.5 92 56.5
Prupe.1G050200 Prunus persica HOM05D004511 ORTHO05D005348 1.4e-22 109.8 77 64.9
QL06p021350 Quercus lobata HOM05D004511 ORTHO05D005348 1.8e-22 109.4 93 57.0
Ah.01g020260 Amaranthus hybridus HOM05D004511 ORTHO05D005348 5.2e-22 107.8 91 58.2
MD13G1223200 Malus domestica HOM05D004511 ORTHO05D005348 5.2e-22 107.8 79 63.3
Medtr1g045670 Medicago truncatula HOM05D004511 ORTHO05D005348 5.2e-22 107.8 92 55.4
arahy.Tifrunner.gnm1.ann1.Z900IQ Arachis hypogaea HOM05D004511 ORTHO05D005348 6.8e-22 107.5 78 62.8
THA.LOC104821629 Tarenaya hassleriana HOM05D004511 ORTHO05D005348 6.8e-22 107.5 93 55.9
TPR.G23996 Trifolium pratense HOM05D004511 ORTHO05D005348 1.2e-21 106.7 92 53.3
FvH4_4g05000 Fragaria vesca HOM05D004511 ORTHO05D005348 2.6e-21 105.5 79 60.8
FAN12G0867 Fragaria x ananassa HOM05D004511 ORTHO05D005348 2.6e-21 105.5 79 60.8
Carub.0003s2466 Capsella rubella HOM05D004511 ORTHO05D005348 3.4e-21 105.1 78 60.3
FAN17G0167 Fragaria x ananassa HOM05D004511 ORTHO05D005348 5.7e-21 104.4 78 60.3
RcHm_v2.0_Chr4g0395811 Rosa chinensis HOM05D004511 ORTHO05D005348 5.7e-21 104.4 79 60.8
GSVIVG01027931001 Vitis vinifera HOM05D004511 ORTHO05D005348 5.7e-21 104.4 93 51.6
EL10Ac9g21855 Beta vulgaris HOM05D004511 ORTHO05D005348 7.5e-21 104.0 78 57.7
Hund00475 Selenicereus undatus HOM05D004511 ORTHO05D005348 2.8e-20 102.1 79 57.0
CARHR100420 Cardamine hirsuta HOM05D004511 ORTHO05D005348 3.7e-20 101.7 78 57.7
CiPaw.01G177000 Carya illinoinensis HOM05D004511 ORTHO05D005348 3.7e-20 101.7 93 50.5
TWI73G0808 Tripterygium wilfordii HOM05D004511 ORTHO05D005348 3.7e-20 101.7 76 57.9
AL3G39770 Arabidopsis lyrata HOM05D004511 ORTHO05D005348 4.9e-20 101.3 79 57.0
Nn1g02989 Nelumbo nucifera HOM05D004511 ORTHO05D005348 4.9e-20 101.3 77 58.4
AUR62011461 Chenopodium quinoa HOM05D004511 ORTHO05D005348 6.3e-20 100.9 78 56.4
Glyma.10G130700 Glycine max HOM05D004511 ORTHO05D005348 6.3e-20 100.9 96 53.1
AUR62016594 Chenopodium quinoa HOM05D004511 ORTHO05D005348 8.3e-20 100.5 78 55.1
Gohir.D09G232000 Gossypium hirsutum HOM05D004511 ORTHO05D005348 8.3e-20 100.5 77 58.4
Gorai.006G254800 Gossypium raimondii HOM05D004511 ORTHO05D005348 8.3e-20 100.5 77 58.4
ECA248G2418 Erigeron canadensis HOM05D004511 ORTHO05D005348 1.1e-19 100.1 78 57.7
Cc03_g06420 Coffea canephora HOM05D004511 ORTHO05D005348 1.4e-19 99.8 79 60.8
Duzib151G0197 Durio zibethinus HOM05D004511 ORTHO05D005348 1.4e-19 99.8 78 59.0
ClCG05G003940 Citrullus lanatus HOM05D004511 ORTHO05D005348 1.8e-19 99.4 95 53.7
Gohir.A09G230900 Gossypium hirsutum HOM05D004511 ORTHO05D005348 1.8e-19 99.4 77 58.4
Lalb_Chr02g0150721 Lupinus albus HOM05D004511 ORTHO05D005348 1.8e-19 99.4 77 58.4
Sc11g0002730 Simmondsia chinensis HOM05D004511 ORTHO05D005348 1.8e-19 99.4 78 59.0
Haze_11474 Corylus avellana HOM05D004511 ORTHO05D005348 3.1e-19 98.6 67 62.7
Psat6g108520 Pisum sativum HOM05D004511 ORTHO05D005348 3.1e-19 98.6 91 56.0
Ciclev10004190m.g Citrus clementina HOM05D004511 ORTHO05D005348 4.1e-19 98.2 72 58.3
COL.COLO4_15984 Corchorus olitorius HOM05D004511 ORTHO05D005348 7.0e-19 97.4 78 56.4
AT3G24320 Arabidopsis thaliana HOM05D004511 ORTHO05D005348 9.2e-19 97.1 78 56.4
MSTRG.9851 Avicennia marina HOM05D004511 ORTHO05D005348 1.6e-18 96.3 79 54.4
Migut.G00563 Erythranthe guttata HOM05D004511 ORTHO05D005348 1.6e-18 96.3 79 55.7
Sp3g22130 Schrenkiella parvula HOM05D004511 ORTHO05D005348 2.7e-18 95.5 79 55.7
Potri.010G065000 Populus trichocarpa HOM05D004511 ORTHO05D005348 3.5e-18 95.1 82 54.9
BcaB06g26614 Brassica carinata HOM05D004511 ORTHO05D005348 4.5e-18 94.7 80 58.8
Thhalv10002376m.g Eutrema salsugineum HOM05D004511 ORTHO05D005348 5.9e-18 94.4 79 57.0
HanXRQChr01g0023051 Helianthus annuus HOM05D004511 ORTHO05D005348 5.9e-18 94.4 75 60.0
Aa31LG8G11050 Aethionema arabicum HOM05D004511 ORTHO05D005348 1.0e-17 93.6 75 58.7
Nitab4.5_0005154g0040 Nicotiana tabacum HOM05D004511 ORTHO05D005348 1.0e-17 93.6 86 55.8
Glyma.20G073500 Glycine max HOM05D004511 ORTHO05D005348 1.7e-17 92.8 97 51.5
CsaV3_3G011610 Cucumis sativus L. HOM05D004511 ORTHO05D005348 2.3e-17 92.4 78 53.8
BcaC06g35683 Brassica carinata HOM05D004511 ORTHO05D005348 3.8e-17 91.7 80 57.5
C07p12050 Brassica napus HOM05D004511 ORTHO05D005348 3.8e-17 91.7 80 57.5
BolC7t41673H Brassica oleracea HOM05D004511 ORTHO05D005348 3.8e-17 91.7 80 57.5
A07p07990 Brassica napus HOM05D004511 ORTHO05D005348 5.0e-17 91.3 80 57.5
BraA07t28586Z Brassica rapa HOM05D004511 ORTHO05D005348 5.0e-17 91.3 80 57.5
CANSAT78G2334 Cannabis sativa HOM05D004511 ORTHO05D005348 5.0e-17 91.3 74 54.1
PGR004G0717 Punica granatum HOM05D004511 ORTHO05D005348 5.0e-17 91.3 79 51.9
Peaxi162Scf00531g00610 Petunia axillaris HOM05D004511 ORTHO05D005348 6.6e-17 90.9 75 58.7
Ca_26419_v3 Cicer arietinum L. HOM05D004511 ORTHO05D005348 1.1e-16 90.1 68 58.8
Nitab4.5_0001041g0180 Nicotiana tabacum HOM05D004511 ORTHO05D005348 1.1e-16 90.1 75 58.7
HanXRQChr06g0182821 Helianthus annuus HOM05D004511 ORTHO05D005348 1.5e-16 89.7 90 48.9
SGA_v2.0_scaffold67G22677 Striga asiatica HOM05D004511 ORTHO05D005348 3.3e-16 88.6 71 54.9
VMungo0720G1651 Vigna mungo HOM05D004511 ORTHO05D005348 3.3e-16 88.6 94 46.8
Phvul.007G232900 Phaseolus vulgaris HOM05D004511 ORTHO05D005348 5.6e-16 87.8 96 47.9
Sed0014740 Sechium edule HOM05D004511 ORTHO05D005348 5.6e-16 87.8 75 53.3
unitig_747.g21671 Utricularia gibba HOM05D004511 ORTHO05D005348 1.2e-15 86.7 79 54.4
Solyc09g090870.3 Solanum lycopersicum HOM05D004511 ORTHO05D005348 1.6e-15 86.3 75 54.7
Sopen09g033830 Solanum pennellii HOM05D004511 ORTHO05D005348 1.6e-15 86.3 75 54.7
Zm00001eb426210 Zea mays HOM05D004511 ORTHO05D005348 5.2e-14 81.3 69 52.2
ATR0787G210 Amborella trichopoda HOM05D004511 ORTHO05D005348 6.8e-14 80.9 78 46.2
Ca_07387_v3 Cicer arietinum L. HOM05D004511 ORTHO05D005348 6.8e-14 80.9 50 68.0
Os04g0507000 Oryza sativa ssp. japonica HOM05D004511 ORTHO05D005348 2.2e-12 75.9 69 49.3
PSO170G1037 Papaver somniferum HOM05D004511 ORTHO05D005348 2.9e-12 75.5 95 35.8
HPP92_015182 Vanilla planifolia HOM05D004511 ORTHO05D005348 4.9e-12 74.7 79 45.6
SEGI_11740 Sequoiadendron giganteum HOM05D004511 ORTHO05D005348 1.1e-11 73.6 65 49.2
SEGI_26830 Sequoiadendron giganteum HOM05D004511 ORTHO05D005348 1.1e-11 73.6 65 49.2
PSO210G5810 Papaver somniferum HOM05D004511 ORTHO05D005348 1.4e-11 73.2 77 40.3
SHI00817 Sapria himalayana HOM05D004511 ORTHO05D005348 1.8e-06 56.2 33 72.7
Pp3c8_22090 Physcomitrium patens HOM05D004511 ORTHO05D005348 6.8e-06 54.3 56 44.6
DCAR_027355 Daucus carota HOM05D004511 ORTHO05D005348 8.9e-06 53.9 32 75.0


User provided reference genes

Program Settings