Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021073 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 1.9e-113 412.5 214 100.0
CSS0011446 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 1.1e-60 237.3 137 90.5
CSS0049273 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 4.4e-57 225.3 145 82.8
Rhsim01G0189100 Rhododendron simsii HOM05D004569 ORTHO05D005333 1.8e-47 193.4 136 72.8
Dinv07545 Davidia involucrata HOM05D004569 ORTHO05D005333 2.7e-46 189.5 133 69.2
CSS0028808 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 1.3e-45 187.2 137 75.9
TAR365G0299 Trochodendron aralioides HOM05D004569 ORTHO05D005333 1.7e-45 186.8 136 69.1
Duzib052G0452 Durio zibethinus HOM05D004569 ORTHO05D005333 3.3e-44 182.6 135 65.9
Thecc.04G238000 Theobroma cacao HOM05D004569 ORTHO05D005333 2.1e-43 179.9 135 65.2
Gorai.005G045300 Gossypium raimondii HOM05D004569 ORTHO05D005333 4.7e-43 178.7 150 60.0
Gohir.A02G034100 Gossypium hirsutum HOM05D004569 ORTHO05D005333 1.0e-42 177.6 136 64.7
Gohir.D02G040900 Gossypium hirsutum HOM05D004569 ORTHO05D005333 1.0e-42 177.6 150 60.0
CiPaw.01G195800 Carya illinoinensis HOM05D004569 ORTHO05D005333 1.8e-42 176.8 134 65.7
Rhsim04G0197700 Rhododendron simsii HOM05D004569 ORTHO05D005333 4.0e-42 175.6 136 68.4
Duzib052G0972 Durio zibethinus HOM05D004569 ORTHO05D005333 5.2e-42 175.3 135 63.0
Peaxi162Scf00192g01617 Petunia axillaris HOM05D004569 ORTHO05D005333 6.8e-42 174.9 141 63.8
vmacro17995 Vaccinium macrocarpon HOM05D004569 ORTHO05D005333 6.8e-42 174.9 159 59.1
Sc19g0003960 Simmondsia chinensis HOM05D004569 ORTHO05D005333 2.6e-41 172.9 137 63.5
GSVIVG01036653001 Vitis vinifera HOM05D004569 ORTHO05D005333 6.4e-40 168.3 114 72.8
CANSAT78G0168 Cannabis sativa HOM05D004569 ORTHO05D005333 8.3e-40 167.9 133 60.9
Nitab4.5_0004412g0030 Nicotiana tabacum HOM05D004569 ORTHO05D005333 1.1e-39 167.5 139 61.9
Nitab4.5_0000321g0230 Nicotiana tabacum HOM05D004569 ORTHO05D005333 3.2e-39 166.0 143 61.5
Nn1g01867 Nelumbo nucifera HOM05D004569 ORTHO05D005333 5.4e-39 165.2 119 71.4
Cfa006984 Carpinus fangiana HOM05D004569 ORTHO05D005333 2.0e-38 163.3 122 68.0
Haze_03750 Corylus avellana HOM05D004569 ORTHO05D005333 2.7e-38 162.9 122 66.4
Manes.02G208200 Manihot esculenta HOM05D004569 ORTHO05D005333 3.0e-37 159.5 120 66.7
ECA246G0155 Erigeron canadensis HOM05D004569 ORTHO05D005333 3.9e-37 159.1 125 63.2
PSO210G1425 Papaver somniferum HOM05D004569 ORTHO05D005333 5.0e-37 158.7 137 61.3
PSO832G4509 Papaver somniferum HOM05D004569 ORTHO05D005333 8.6e-37 157.9 142 58.5
SGA_v2.0_scaffold45G17132 Striga asiatica HOM05D004044 ORTHO05D005333 1.9e-36 156.8 128 61.7
Hund09493 Selenicereus undatus HOM05D004569 ORTHO05D005333 2.5e-36 156.4 147 56.5
Peaxi162Scf00904g00217 Petunia axillaris HOM05D004569 ORTHO05D005333 4.3e-36 155.6 145 57.2
Aqoxy5G00407 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 7.3e-36 154.8 131 61.1
Oeu058961.1 Olea europaea HOM05D004569 ORTHO05D005333 7.3e-36 154.8 132 58.3
HanXRQChr05g0158611 Helianthus annuus HOM05D004569 ORTHO05D005333 1.2e-35 154.1 116 67.2
Potri.005G067600 Populus trichocarpa HOM05D004569 ORTHO05D005333 1.2e-35 154.1 131 61.1
CAN.G135.33 Capsicum annuum HOM05D004569 ORTHO05D005333 3.6e-35 152.5 138 59.4
ClCG06G006470 Citrullus lanatus HOM05D004569 ORTHO05D005333 3.6e-35 152.5 135 58.5
Lj6g0017152 Lotus japonicus HOM05D004569 ORTHO05D005333 4.7e-35 152.1 121 64.5
TWI63G1720 Tripterygium wilfordii HOM05D004569 ORTHO05D005333 4.7e-35 152.1 154 51.9
Prupe.1G020700 Prunus persica HOM05D004569 ORTHO05D005333 8.0e-35 151.4 155 54.8
HanXRQChr06g0173001 Helianthus annuus HOM05D004569 ORTHO05D005333 1.0e-34 151.0 121 62.8
SalBow2G1663 Salvia bowleyana HOM05D004569 ORTHO05D005333 1.0e-34 151.0 138 58.0
Ciclev10006087m.g Citrus clementina HOM05D004569 ORTHO05D005333 1.4e-34 150.6 133 59.4
Atru.chr4.2374 Acer truncatum HOM05D004569 ORTHO05D005333 3.1e-34 149.4 145 56.6
SalBow8G0974 Salvia bowleyana HOM05D004569 ORTHO05D005333 5.2e-34 148.7 131 60.3
MD13G1198900 Malus domestica HOM05D004569 ORTHO05D005333 6.8e-34 148.3 127 54.3
Aa31LG11G680 Aethionema arabicum HOM05D004569 ORTHO05D005333 8.9e-34 147.9 133 57.9
Lalb_Chr06g0161741 Lupinus albus HOM05D004569 ORTHO05D005333 8.9e-34 147.9 146 54.1
Oeu042815.1 Olea europaea HOM05D004569 ORTHO05D005333 8.9e-34 147.9 136 56.6
Lsat_1_v5_gn_1_12980 Lactuca sativa HOM05D004569 ORTHO05D005333 2.0e-33 146.7 125 57.6
PGR004G1818 Punica granatum HOM05D004569 ORTHO05D005333 2.0e-33 146.7 139 56.8
Sopen11g003670 Solanum pennellii HOM05D004569 ORTHO05D005333 2.0e-33 146.7 158 51.9
CARHR276760 Cardamine hirsuta HOM05D004569 ORTHO05D005333 2.6e-33 146.4 136 55.9
CDE05G0131 Ceratophyllum demersum HOM05D004569 ORTHO05D005333 2.6e-33 146.4 129 59.7
PGR031G3247 Punica granatum HOM05D004569 ORTHO05D005333 3.4e-33 146.0 138 58.7
CsaV3_2G013430 Cucumis sativus L. HOM05D004569 ORTHO05D005333 1.7e-32 143.7 151 51.0
AT5G62950 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 2.2e-32 143.3 137 56.2
Sed0021164 Sechium edule HOM05D004569 ORTHO05D005333 2.2e-32 143.3 142 57.7
Sp2g26090 Schrenkiella parvula HOM05D004569 ORTHO05D005333 4.9e-32 142.1 136 55.9
AL3G51140 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 6.4e-32 141.7 134 57.5
AL8G39970 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 6.4e-32 141.7 145 54.5
SGA_v2.0_scaffold353G49718 Striga asiatica HOM05D004569 ORTHO05D005333 1.1e-31 141.0 120 59.2
Dinv40544 Davidia involucrata HOM05D004569 ORTHO05D005333 1.9e-31 140.2 89 77.5
Phvul.001G230900 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 1.9e-31 140.2 125 57.6
Thhalv10005100m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 2.4e-31 139.8 137 54.0
Cc03_g04240 Coffea canephora HOM05D004569 ORTHO05D005333 3.2e-31 139.4 140 55.0
arahy.Tifrunner.gnm1.ann1.SFA2KC Arachis hypogaea HOM05D004569 ORTHO05D005333 4.1e-31 139.0 119 59.7
Nitab4.5_0004743g0130 Nicotiana tabacum HOM05D004569 ORTHO05D005333 4.1e-31 139.0 139 57.6
arahy.Tifrunner.gnm1.ann1.NDW3GA Arachis hypogaea HOM05D004569 ORTHO05D005333 5.4e-31 138.7 134 53.7
Thhalv10000370m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 5.4e-31 138.7 132 55.3
Ah.02g110960 Amaranthus hybridus HOM05D000936 ORTHO05D001411 9.2e-31 137.9 136 57.4
MBI18_g09782_MAGBIO Magnolia biondii HOM05D004569 ORTHO05D005333 1.2e-30 137.5 124 59.7
Carub.0008s2366 Capsella rubella HOM05D004569 ORTHO05D005333 1.6e-30 137.1 137 52.6
THA.LOC104827037 Tarenaya hassleriana HOM05D004569 ORTHO05D005333 2.0e-30 136.7 137 52.6
Carub.0004s0755 Capsella rubella HOM05D004569 ORTHO05D005333 2.7e-30 136.3 136 53.7
Glyma.18G039600 Glycine max HOM05D004569 ORTHO05D005333 3.5e-30 136.0 118 58.5
VMungo1383G1439 Vigna mungo HOM05D004569 ORTHO05D005333 4.6e-30 135.6 132 52.3
Lj5g0008299 Lotus japonicus HOM05D004569 ORTHO05D005333 6.0e-30 135.2 126 56.3
BcaB07g29675 Brassica carinata HOM05D004569 ORTHO05D005333 7.8e-30 134.8 137 52.6
AUR62028629 Chenopodium quinoa HOM05D004569 ORTHO05D005333 1.0e-29 134.4 129 55.0
VMungo1383G2501 Vigna mungo HOM05D004569 ORTHO05D005333 1.0e-29 134.4 127 54.3
unitig_748.g7305 Utricularia gibba HOM05D004569 ORTHO05D005333 1.3e-29 134.0 118 58.5
BcaC03g18183 Brassica carinata HOM05D004569 ORTHO05D005333 1.7e-29 133.7 138 55.1
C02p62490 Brassica napus HOM05D004569 ORTHO05D005333 1.7e-29 133.7 138 55.1
BolC2t12308H Brassica oleracea HOM05D004569 ORTHO05D005333 1.7e-29 133.7 138 55.1
A02p42590 Brassica napus HOM05D004569 ORTHO05D005333 2.3e-29 133.3 147 53.1
BraA02t09187Z Brassica rapa HOM05D004569 ORTHO05D005333 2.3e-29 133.3 147 53.1
Glyma.11G217000 Glycine max HOM05D004569 ORTHO05D005333 2.3e-29 133.3 118 56.8
TAR636G3114 Trochodendron aralioides HOM05D004569 ORTHO05D005333 5.0e-29 132.1 114 60.5
Ca_17658_v3 Cicer arietinum L. HOM05D004569 ORTHO05D005333 6.6e-29 131.7 143 51.0
MELO3C014285.2 Cucumis melo HOM05D004569 ORTHO05D005333 6.6e-29 131.7 158 48.1
BolC6t39293H Brassica oleracea HOM05D004569 ORTHO05D005333 8.6e-29 131.3 141 53.9
Migut.B00535 Erythranthe guttata HOM05D004569 ORTHO05D005333 1.1e-28 131.0 131 51.9
BcaC08g46303 Brassica carinata HOM05D004569 ORTHO05D005333 3.3e-28 129.4 137 54.0
C06p41320 Brassica napus HOM05D004569 ORTHO05D005333 3.3e-28 129.4 137 54.0
Hma1.2p1_0602F.1_g187570 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 1.6e-27 127.1 89 70.8
Medtr7g034585 Medicago truncatula HOM05D004569 ORTHO05D005333 1.6e-27 127.1 133 48.1
ATR0829G086 Amborella trichopoda HOM05D004569 ORTHO05D005333 2.8e-27 126.3 124 56.5
A09p07940 Brassica napus HOM05D004569 ORTHO05D005333 2.8e-27 126.3 149 50.3
PGSC0003DMG400027326 Solanum tuberosum HOM05D004569 ORTHO05D005333 2.8e-27 126.3 157 47.1
TPR.G14863 Trifolium pratense HOM05D004569 ORTHO05D005333 3.6e-27 125.9 144 49.3
C09p08990 Brassica napus HOM05D004569 ORTHO05D005333 4.7e-27 125.6 145 49.7
BolC9t53811H Brassica oleracea HOM05D004569 ORTHO05D005333 4.7e-27 125.6 145 49.7
BcaB04g19957 Brassica carinata HOM05D004569 ORTHO05D005333 6.2e-27 125.2 140 52.1
Psat3g163880 Pisum sativum HOM05D004569 ORTHO05D005333 6.2e-27 125.2 145 44.1
BcaC04g23378 Brassica carinata HOM05D004569 ORTHO05D005333 1.1e-26 124.4 135 50.4
Lsat_1_v5_gn_6_95400 Lactuca sativa HOM05D004569 ORTHO05D005333 1.1e-26 124.4 103 58.3
Atru.chr4.2398 Acer truncatum HOM05D004569 ORTHO05D005333 1.4e-26 124.0 88 65.9
Sabra05G0055500 Salix brachista HOM05D004569 ORTHO05D005333 1.4e-26 124.0 104 62.5
BcaC01g02544 Brassica carinata HOM05D004569 ORTHO05D005333 1.8e-26 123.6 129 54.3
C03p63650 Brassica napus HOM05D004569 ORTHO05D005333 1.8e-26 123.6 129 54.3
BolC3t18624H Brassica oleracea HOM05D004569 ORTHO05D005333 1.8e-26 123.6 129 54.3
SalBow1G3047 Salvia bowleyana HOM05D004569 ORTHO05D005333 1.5e-25 120.6 127 52.8
Eucgr.H03416 Eucalyptus grandis HOM05D004569 ORTHO05D005333 2.0e-25 120.2 124 52.4
BraA09t36445Z Brassica rapa HOM05D004569 ORTHO05D005333 2.6e-25 119.8 148 48.6
Zm00001eb076270 Zea mays HOM05D004569 ORTHO05D005333 3.4e-25 119.4 148 48.0
Zm00001eb076250 Zea mays HOM05D004569 ORTHO05D005333 4.4e-25 119.0 148 48.0
COL.COLO4_21559 Corchorus olitorius HOM05D004569 ORTHO05D005333 9.8e-25 117.9 112 55.4
Zm00001eb076290 Zea mays HOM05D004569 ORTHO05D005333 1.3e-24 117.5 128 50.8
Zm00001eb310390 Zea mays HOM05D004569 ORTHO05D005333 1.3e-24 117.5 128 50.8
Aqoxy2G03457 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 6.4e-24 115.2 80 68.8
FvH4_4g01070 Fragaria vesca HOM05D004569 ORTHO05D005333 6.4e-24 115.2 130 47.7
RcHm_v2.0_Chr4g0387641 Rosa chinensis HOM05D004569 ORTHO05D005333 8.3e-24 114.8 144 47.2
RcHm_v2.0_Chr6g0280701 Rosa chinensis HOM05D004569 ORTHO05D005333 8.3e-24 114.8 144 47.2
HPP92_022914 Vanilla planifolia HOM05D004569 ORTHO05D005333 1.9e-23 113.6 150 45.3
FAN12G4296 Fragaria x ananassa HOM05D004569 ORTHO05D005333 9.2e-23 111.3 130 46.9
Dinv07599 Davidia involucrata HOM05D004569 ORTHO05D005333 1.6e-22 110.5 85 64.7
BraA06t25922Z Brassica rapa HOM05D004569 ORTHO05D005333 2.1e-22 110.2 117 51.3
Atru.chr5.182 Acer truncatum HOM05D004569 ORTHO05D005333 2.7e-22 109.8 118 54.2
Hma1.2p1_0549F.1_g176970 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 1.0e-21 107.8 91 58.2
Pp3c21_14050 Physcomitrium patens HOM05D004569 ORTHO05D005333 2.3e-21 106.7 133 42.9
FvH4_5g27570 Fragaria vesca HOM05D004569 ORTHO05D005333 1.5e-20 104.0 130 45.4
BcaB02g09711 Brassica carinata HOM05D004569 ORTHO05D005333 1.9e-20 103.6 129 46.5
Medtr6g045613 Medicago truncatula HOM05D004569 ORTHO05D005333 4.3e-20 102.4 88 53.4
Mapoly0090s0037 Marchantia polymorpha HOM05D004569 ORTHO05D005333 1.2e-19 100.9 119 44.5
FAN13G2556 Fragaria x ananassa HOM05D004569 ORTHO05D005333 2.8e-19 99.8 133 45.9
Psat3g162000 Pisum sativum HOM05D004569 ORTHO05D005333 4.7e-19 99.0 88 51.1
Medtr6g045603 Medicago truncatula HOM05D004569 ORTHO05D005333 6.2e-19 98.6 133 41.4
Os12g0488800 Oryza sativa ssp. japonica HOM05D004569 ORTHO05D005333 1.4e-18 97.4 86 57.0
AUR62033084 Chenopodium quinoa HOM05D004569 ORTHO05D005333 9.9e-17 91.3 94 51.1
AagrBONN_evm.TU.Sc2ySwM_228.788 Anthoceros agrestis HOM05D004569 ORTHO05D005333 1.7e-16 90.5 145 40.7
vmacro08367 Vaccinium macrocarpon HOM05D004569 ORTHO05D005333 1.7e-16 90.5 135 45.2
Lj6C645G5 Lonicera japonica HOM05D004569 ORTHO05D005333 4.1e-15 85.9 152 40.1
SEGI_13490 Sequoiadendron giganteum HOM05D004569 ORTHO05D000001 3.5e-14 82.8 95 47.4
AT3G28956 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 2.3e-13 80.1 63 58.7
FAN18G3311 Fragaria x ananassa HOM05D004569 ORTHO05D005333 1.1e-12 77.8 131 39.7
arahy.Tifrunner.gnm1.ann1.LSLG48 Arachis hypogaea HOM05D001291 ORTHO05D005333 5.6e-12 75.5 88 47.7
SMO343G0078 Selaginella moellendorffii HOM05D004569 ORTHO05D005333 5.6e-12 75.5 127 37.0
CBR_g19683 Chara braunii HOM05D004569 ORTHO05D005333 1.2e-11 74.3 91 45.1
GSVIVG01008529001 Vitis vinifera HOM05D004569 ORTHO05D005333 3.6e-11 72.8 61 59.0
AUR62008054 Chenopodium quinoa HOM05D000001 ORTHO05D000501 5.2e-10 68.9 78 46.2
SEGI_07191 Sequoiadendron giganteum HOM05D004569 ORTHO05D005333 3.4e-09 66.2 82 46.3
Solyc11g007810.3 Solanum lycopersicum HOM05D004569 ORTHO05D005333 3.4e-09 66.2 70 51.4
Phvul.001G219600 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 3.8e-08 62.8 45 62.2
SalBow2G3500 Salvia bowleyana HOM05D000011 ORTHO05D000018 7.1e-07 58.5 40 70.0
A06p29750 Brassica napus HOM05D004569 ORTHO05D005333 3.5e-06 56.2 40 60.0
Dinv14042 Davidia involucrata HOM05D002297 ORTHO05D002385 3.5e-06 56.2 42 64.3


User provided reference genes

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