Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020032 Camellia sinensis var. sinensis HOM05D005045 ORTHO05D006386 0.0e+00 2327.4 1266 100.0
CiPaw.01G116800 Carya illinoinensis HOM05D005045 ORTHO05D006386 0.0e+00 1958.0 1317 78.0
Cfa014961 Carpinus fangiana HOM05D005045 ORTHO05D006386 0.0e+00 1925.6 1303 78.2
TWI53G1845 Tripterygium wilfordii HOM05D005045 ORTHO05D006386 0.0e+00 1914.4 1317 76.8
Cpa.g.sc157.48 Carica papaya HOM05D005045 ORTHO05D006386 0.0e+00 1906.0 1317 76.7
Actinidia28996 Actinidia chinensis HOM05D005045 ORTHO05D006386 0.0e+00 1900.6 1321 78.9
Potri.001G320300 Populus trichocarpa HOM05D005045 ORTHO05D006386 0.0e+00 1855.5 1317 74.6
Ciclev10004166m.g Citrus clementina HOM05D005045 ORTHO05D006386 0.0e+00 1845.1 1317 74.6
Sed0026716 Sechium edule HOM05D005045 ORTHO05D006386 0.0e+00 1838.9 1317 73.5
Dinv38168 Davidia involucrata HOM05D005045 ORTHO05D006386 0.0e+00 1827.0 1317 75.2
MELO3C006292.2 Cucumis melo HOM05D005045 ORTHO05D006386 0.0e+00 1825.4 1317 73.2
PGR142G0016 Punica granatum HOM05D005045 ORTHO05D006386 0.0e+00 1804.6 1317 74.2
Lj6g0005100 Lotus japonicus HOM05D005045 ORTHO05D006386 0.0e+00 1802.7 1317 74.6
CsaV3_3G010730 Cucumis sativus L. HOM05D005045 ORTHO05D006386 0.0e+00 1791.9 1317 72.2
ClCG05G003110 Citrullus lanatus HOM05D005045 ORTHO05D006386 0.0e+00 1779.2 1342 71.3
Phvul.001G266800 Phaseolus vulgaris HOM05D005045 ORTHO05D006386 0.0e+00 1772.3 1317 72.0
Glyma.18G002400 Glycine max HOM05D005045 ORTHO05D006386 0.0e+00 1771.1 1317 71.5
Lalb_Chr11g0075871 Lupinus albus HOM05D005045 ORTHO05D006386 0.0e+00 1761.9 1317 70.9
Haze_11653 Corylus avellana HOM05D005045 ORTHO05D006386 0.0e+00 1760.3 1549 64.2
Manes.03G144200 Manihot esculenta HOM05D005045 ORTHO05D006386 0.0e+00 1755.7 1317 71.1
Prupe.1G165000 Prunus persica HOM05D005045 ORTHO05D006386 0.0e+00 1746.1 1319 70.7
THA.LOC104826172 Tarenaya hassleriana HOM05D005045 ORTHO05D006386 0.0e+00 1744.6 1317 70.2
Peaxi162Scf00423g00410 Petunia axillaris HOM05D005045 ORTHO05D006386 0.0e+00 1728.8 1317 69.6
Sabra16G0202900 Salix brachista HOM05D005045 ORTHO05D006386 0.0e+00 1718.4 1436 65.9
Thhalv10016151m.g Eutrema salsugineum HOM05D005045 ORTHO05D006386 0.0e+00 1717.6 1317 68.9
FvH4_4g13300 Fragaria vesca HOM05D005045 ORTHO05D006386 0.0e+00 1716.8 1317 69.5
Thecc.04G195000 Theobroma cacao HOM05D005045 ORTHO05D006386 0.0e+00 1714.5 1317 71.8
Carub.0004s1329 Capsella rubella HOM05D005045 ORTHO05D006386 0.0e+00 1713.0 1317 68.9
Cc03_g08470 Coffea canephora HOM05D005045 ORTHO05D006386 0.0e+00 1711.0 1318 69.4
CAN.G765.38 Capsicum annuum HOM05D005045 ORTHO05D006386 0.0e+00 1704.5 1317 69.9
RcHm_v2.0_Chr4g0413591 Rosa chinensis HOM05D005045 ORTHO05D006386 0.0e+00 1701.8 1317 69.2
Sp4g14350 Schrenkiella parvula HOM05D005045 ORTHO05D006386 0.0e+00 1687.5 1317 68.9
MD05G1230300 Malus domestica HOM05D005045 ORTHO05D006386 0.0e+00 1675.6 1317 67.7
Sopen05g032270 Solanum pennellii HOM05D005045 ORTHO05D006386 0.0e+00 1672.1 1333 68.1
Aa31LG5G5040 Aethionema arabicum HOM05D005045 ORTHO05D006386 0.0e+00 1670.2 1343 68.0
Migut.G00767 Erythranthe guttata HOM05D005045 ORTHO05D006386 0.0e+00 1667.5 1317 67.0
Rhsim02G0061900 Rhododendron simsii HOM05D005045 ORTHO05D006386 0.0e+00 1658.7 1401 66.8
Aqoxy2G03932 Aquilegia oxysepala HOM05D005045 ORTHO05D006386 0.0e+00 1657.5 1317 67.5
AT2G31970 Arabidopsis thaliana HOM05D005045 ORTHO05D006386 0.0e+00 1657.5 1317 67.3
BcaB01g04004 Brassica carinata HOM05D005045 ORTHO05D006386 0.0e+00 1657.5 1317 67.5
VMungo1383G3533 Vigna mungo HOM05D005045 ORTHO05D006386 0.0e+00 1657.5 1310 68.5
AL4G27320 Arabidopsis lyrata HOM05D005045 ORTHO05D006386 0.0e+00 1656.3 1317 67.2
PSO017G0058 Papaver somniferum HOM05D005045 ORTHO05D006386 0.0e+00 1648.6 1317 67.1
Solyc05g053800.3 Solanum lycopersicum HOM05D005045 ORTHO05D006386 0.0e+00 1647.9 1333 67.4
Eucgr.H00025 Eucalyptus grandis HOM05D005045 ORTHO05D006386 0.0e+00 1643.6 1210 72.8
Atru.chr4.1578 Acer truncatum HOM05D005045 ORTHO05D006386 0.0e+00 1641.7 1266 71.3
Duzib151G0179 Durio zibethinus HOM05D005045 ORTHO05D006386 0.0e+00 1639.8 1317 69.4
A03p17990 Brassica napus HOM05D005045 ORTHO05D006386 0.0e+00 1637.1 1340 66.3
BolC3t14484H Brassica oleracea HOM05D005045 ORTHO05D006386 0.0e+00 1632.1 1332 66.4
Nn3g20083 Nelumbo nucifera HOM05D005045 ORTHO05D006386 0.0e+00 1630.9 1325 66.9
C03p21030 Brassica napus HOM05D005045 ORTHO05D006386 0.0e+00 1630.2 1332 66.4
BraA03t11060Z Brassica rapa HOM05D005045 ORTHO05D006386 0.0e+00 1629.8 1359 65.3
HPP92_024209 Vanilla planifolia HOM05D005045 ORTHO05D006386 0.0e+00 1624.8 1317 65.9
Psat5g100040 Pisum sativum HOM05D005045 ORTHO05D006386 0.0e+00 1620.5 1317 66.4
FAN12G2321 Fragaria x ananassa HOM05D005045 ORTHO05D006386 0.0e+00 1617.1 1318 66.5
FAN22G0494 Fragaria x ananassa HOM05D005045 ORTHO05D006386 0.0e+00 1613.2 1372 65.2
Gohir.A02G019100 Gossypium hirsutum HOM05D005045 ORTHO05D006386 0.0e+00 1606.3 1323 67.6
Gohir.D02G022400 Gossypium hirsutum HOM05D005045 ORTHO05D006386 0.0e+00 1604.7 1330 67.4
Gorai.005G027800 Gossypium raimondii HOM05D005045 ORTHO05D006386 0.0e+00 1604.3 1330 67.4
MSTRG.9796 Avicennia marina HOM05D005045 ORTHO05D006386 0.0e+00 1603.2 1317 65.1
TPR.G25379 Trifolium pratense HOM05D005045 ORTHO05D006386 0.0e+00 1602.0 1337 66.8
Nitab4.5_0002260g0080 Nicotiana tabacum HOM05D005045 ORTHO05D006386 0.0e+00 1592.4 1261 68.3
Medtr3g084300 Medicago truncatula HOM05D005045 ORTHO05D006386 0.0e+00 1590.5 1317 65.8
Sc19g0007360 Simmondsia chinensis HOM05D005045 ORTHO05D006386 0.0e+00 1588.5 1210 70.9
vmacro15566 Vaccinium macrocarpon HOM05D005045 ORTHO05D006386 0.0e+00 1583.2 1370 66.2
ATR0561G148 Amborella trichopoda HOM05D005045 ORTHO05D006386 0.0e+00 1555.8 1303 64.6
Lsat_1_v5_gn_6_59140 Lactuca sativa HOM05D005045 ORTHO05D006386 0.0e+00 1540.8 1300 64.4
EL10Ac3g07454 Beta vulgaris HOM05D005045 ORTHO05D006386 0.0e+00 1524.2 1317 62.8
FAN07G1455 Fragaria x ananassa HOM05D005045 ORTHO05D006386 0.0e+00 1519.6 1254 65.9
HanXRQChr02g0058481 Helianthus annuus HOM05D005045 ORTHO05D006386 0.0e+00 1517.7 1317 62.9
SalBow8G0828 Salvia bowleyana HOM05D005045 ORTHO05D006386 0.0e+00 1510.0 1303 62.9
SGA_v2.0_scaffold27G11679 Striga asiatica HOM05D005045 ORTHO05D006386 0.0e+00 1501.5 1316 62.3
CDE02G0777 Ceratophyllum demersum HOM05D005045 ORTHO05D006386 0.0e+00 1500.7 1317 63.4
ECA233G4939 Erigeron canadensis HOM05D005045 ORTHO05D006386 0.0e+00 1497.6 1317 62.0
DCAR_005488 Daucus carota HOM05D005045 ORTHO05D006386 0.0e+00 1480.7 1303 64.3
Mapoly0027s0186 Marchantia polymorpha HOM05D005045 ORTHO05D006386 0.0e+00 1196.0 1317 52.2
Pp3c10_3760 Physcomitrium patens HOM05D005045 ORTHO05D006386 0.0e+00 1124.8 1324 49.5
AagrBONN_evm.TU.Sc2ySwM_368.995 Anthoceros agrestis HOM05D002013 ORTHO05D002293 0.0e+00 1077.4 1321 47.5
Zm00001eb181120 Zea mays HOM05D005045 ORTHO05D006386 5.5e-309 1064.7 1060 54.8
Nitab4.5_0003358g0080 Nicotiana tabacum HOM05D005045 ORTHO05D006386 1.6e-300 1036.6 1025 57.6
Oeu034322.3 Olea europaea HOM05D005045 ORTHO05D006386 1.9e-296 1023.1 902 65.6
SMO356G0717 Selaginella moellendorffii HOM05D005045 ORTHO05D006386 1.8e-275 953.4 1316 44.5
CARHR125720 Cardamine hirsuta HOM05D005045 ORTHO05D006386 1.9e-272 943.3 743 67.6
unitig_0.g1961 Utricularia gibba HOM05D005045 ORTHO05D006386 4.2e-272 942.2 1059 51.4
MBI07_g27365_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 1.4e-267 927.2 749 66.6
arahy.Tifrunner.gnm1.ann1.2Y4S4L Arachis hypogaea HOM05D005045 ORTHO05D006386 2.7e-263 912.9 631 74.8
BcaNung07126 Brassica carinata HOM05D005045 ORTHO05D006386 4.6e-263 912.1 744 65.5
arahy.Tifrunner.gnm1.ann1.RK3EBX Arachis hypogaea HOM05D005045 ORTHO05D006386 6.0e-263 911.8 631 74.6
TAR362G1154 Trochodendron aralioides HOM05D005045 ORTHO05D006386 7.3e-261 904.8 669 73.1
SEGI_03959 Sequoiadendron giganteum HOM05D005045 ORTHO05D006386 1.7e-257 893.6 761 61.6
Ah.04g149410 Amaranthus hybridus HOM05D005045 ORTHO05D006386 2.7e-255 886.3 1102 48.9
AUR62020863 Chenopodium quinoa HOM05D005045 ORTHO05D006386 6.7e-254 881.7 890 54.7
SMO217G0009 Selaginella moellendorffii HOM05D005045 ORTHO05D006386 5.3e-251 872.1 1260 43.6
Ca_16406_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 1.9e-237 827.0 631 69.6
Lju912A1G33 Lonicera japonica HOM05D005045 ORTHO05D006386 6.5e-233 812.0 724 61.7
MBI07_g27366_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 1.7e-228 797.3 554 74.9
Os02g0497500 Oryza sativa ssp. japonica HOM05D005045 ORTHO05D006386 4.4e-221 772.7 724 56.6
BcaC01g05925 Brassica carinata HOM05D005045 ORTHO05D006386 1.9e-216 757.3 742 58.8
SHI26063 Sapria himalayana HOM05D005045 ORTHO05D006386 2.0e-213 747.3 735 58.5
Ca_16407_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 1.1e-208 731.5 594 66.5
Ca_16416_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 1.1e-208 731.5 594 66.5
CBR_g44539 Chara braunii HOM05D005045 ORTHO05D006386 6.1e-207 725.7 1263 38.6
Lj6C381G5 Lonicera japonica HOM05D005045 ORTHO05D006386 1.5e-200 704.5 593 66.3
CSS0025820 Camellia sinensis var. sinensis HOM05D005045 ORTHO05D006386 1.2e-186 658.3 340 99.1
MCO01G132 Micromonas commoda HOM05D005045 ORTHO05D006386 6.4e-164 582.8 1377 33.2
Aqoxy430s001 Aquilegia oxysepala HOM05D005045 ORTHO05D006386 3.6e-159 567.0 526 60.3
arahy.Tifrunner.gnm1.ann1.KK4CMR Arachis hypogaea HOM05D005045 ORTHO05D006386 4.4e-149 533.5 444 66.2
AUR62020862 Chenopodium quinoa HOM05D005045 ORTHO05D006386 9.6e-144 515.8 435 63.9
Lju912C0T2 Lonicera japonica HOM05D005045 ORTHO05D006386 1.6e-143 515.0 457 63.7
AUR62018556 Chenopodium quinoa HOM05D005045 ORTHO05D006386 1.0e-137 495.7 373 69.2
FAN17G1875 Fragaria x ananassa HOM05D005045 ORTHO05D006386 5.6e-136 490.0 296 84.8
Cre03.g192550 Chlamydomonas reinhardtii HOM05D005045 ORTHO05D006386 2.1e-135 488.0 1386 30.7
PRCOL_00000463 Prasinoderma coloniale HOM05D005045 ORTHO05D006386 6.2e-135 486.5 1325 30.0
Cfa022909 Carpinus fangiana HOM05D005045 ORTHO05D006386 4.2e-123 447.2 1336 28.9
Ca_16414_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 5.1e-121 440.3 222 97.7
COL.COLO4_20231 Corchorus olitorius HOM05D005045 ORTHO05D006386 8.2e-119 433.0 853 37.9
COL.COLO4_20233 Corchorus olitorius HOM05D005045 ORTHO05D006386 1.7e-116 425.2 244 88.1
QL06p025788 Quercus lobata HOM05D005045 ORTHO05D006386 7.2e-115 419.9 264 81.4
unitig_0.g1960 Utricularia gibba HOM05D005045 ORTHO05D006386 5.7e-112 410.2 224 89.7
BcaNung07125 Brassica carinata HOM05D005045 ORTHO05D006386 1.8e-110 405.2 321 67.9
Ca_16415_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 1.9e-107 395.2 408 54.7
BcaB01g04007 Brassica carinata HOM05D005045 ORTHO05D006386 7.0e-102 376.7 391 55.8
AL80U10080 Arabidopsis lyrata HOM05D005045 ORTHO05D006386 3.8e-92 344.4 187 92.0
Ah.04g149400 Amaranthus hybridus HOM05D005045 ORTHO05D006386 2.5e-91 341.7 223 80.3
Lj6A381G13 Lonicera japonica HOM05D005045 ORTHO05D006386 1.8e-89 335.5 235 74.5
Nitab4.5_0003358g0100 Nicotiana tabacum HOM05D005045 ORTHO05D006386 7.5e-64 250.4 126 94.4
Nitab4.5_0003358g0090 Nicotiana tabacum HOM05D005045 ORTHO05D006386 1.0e-52 213.4 140 81.4
Lj6A381G12 Lonicera japonica HOM05D005045 ORTHO05D006386 9.5e-51 206.8 192 57.3
Actinidia11455 Actinidia chinensis HOM05D005045 ORTHO05D006386 2.1e-50 205.7 139 81.3
Prupe.1G180400 Prunus persica HOM05D005045 ORTHO05D006386 7.1e-46 190.7 170 60.0
SHI26076 Sapria himalayana HOM05D005045 ORTHO05D006386 3.5e-37 161.8 87 93.1
BcaB01g04008 Brassica carinata HOM05D005045 ORTHO05D006386 5.6e-35 154.5 229 43.2
Actinidia11457 Actinidia chinensis HOM05D005045 ORTHO05D006386 7.3e-35 154.1 106 78.3
Rhsim02G0061800 Rhododendron simsii HOM05D005045 ORTHO05D006386 8.1e-34 150.6 72 97.2
SHI26067 Sapria himalayana HOM05D005045 ORTHO05D006386 1.1e-33 150.2 114 67.5
SHI26068 Sapria himalayana HOM05D005045 ORTHO05D000014 6.2e-26 124.4 141 48.2
SHI26072 Sapria himalayana HOM05D005045 ORTHO05D006386 1.5e-24 119.8 176 47.2
MBI07_g45033_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 4.9e-23 114.8 100 63.0
Lsat_1_v5_gn_2_13081 Lactuca sativa HOM05D005045 ORTHO05D006386 3.5e-21 108.6 64 84.4
Lsat_1_v5_gn_5_127521 Lactuca sativa HOM05D005045 ORTHO05D006386 1.9e-19 102.8 106 58.5
QL10p041126 Quercus lobata HOM05D005045 ORTHO05D006386 1.9e-19 102.8 90 62.2
Lsat_1_v5_gn_3_72140 Lactuca sativa HOM05D005045 ORTHO05D006386 3.3e-19 102.1 64 78.1
BcaC05g28670 Brassica carinata HOM05D005045 ORTHO05D006386 2.6e-16 92.4 77 62.3
VMungo0331G0368 Vigna mungo HOM05D005045 ORTHO05D006386 3.2e-14 85.5 131 42.0
VMungo0251G0925 Vigna mungo HOM05D005045 ORTHO05D005612 1.6e-13 83.2 87 56.3
Lsat_1_v5_gn_6_56800 Lactuca sativa HOM05D000112 ORTHO05D001918 1.3e-12 80.1 53 71.7
ECA233G3942 Erigeron canadensis HOM05D005045 ORTHO05D006386 9.6e-11 73.9 124 35.5
Lsat_1_v5_gn_8_35100 Lactuca sativa HOM05D000324 ORTHO05D010724 8.2e-10 70.9 63 65.1
Lsat_1_v5_gn_4_149801 Lactuca sativa HOM05D000324 ORTHO05D010724 1.5e-08 66.6 61 65.6
Lsat_1_v5_gn_9_35481 Lactuca sativa HOM05D000324 ORTHO05D010724 2.6e-08 65.9 56 69.6
Lsat_1_v5_gn_1_5060 Lactuca sativa HOM05D001876 ORTHO05D002002 5.5e-06 58.2 33 84.8


User provided reference genes

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