Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019886 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 4.7e-242 841.3 595 100.0
CSS0042379 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 3.1e-217 758.8 587 75.3
vmacro04273 Vaccinium macrocarpon HOM05D005064 ORTHO05D006611 1.7e-103 380.9 590 43.4
Rhsim05G0225400 Rhododendron simsii HOM05D005064 ORTHO05D006611 9.5e-102 375.2 525 45.5
Dinv35394 Davidia involucrata HOM05D005064 ORTHO05D006611 5.4e-97 359.4 589 41.4
Lj2C68T2 Lonicera japonica HOM05D005064 ORTHO05D006611 6.0e-72 276.2 595 35.8
Atru.chr8.2328 Acer truncatum HOM05D005064 ORTHO05D006611 5.5e-65 253.1 590 32.7
Duzib093G0745 Durio zibethinus HOM05D005064 ORTHO05D006611 2.7e-64 250.8 597 33.3
GSVIVG01030280001 Vitis vinifera HOM05D005064 ORTHO05D006611 2.5e-62 244.2 641 33.7
Manes.09G111200 Manihot esculenta HOM05D005064 ORTHO05D006611 7.4e-62 242.7 604 34.4
Potri.014G189600 Populus trichocarpa HOM05D005064 ORTHO05D006611 7.6e-59 232.6 606 36.5
Haze_21075 Corylus avellana HOM05D005064 ORTHO05D006611 1.5e-54 218.4 589 32.3
TWI74G0298 Tripterygium wilfordii HOM05D005064 ORTHO05D006611 4.3e-54 216.9 593 31.5
Migut.J00101 Erythranthe guttata HOM05D005064 ORTHO05D006611 1.5e-51 208.4 624 31.6
QL07p034075 Quercus lobata HOM05D005064 ORTHO05D006611 1.3e-50 205.3 592 31.2
Thecc.05G007600 Theobroma cacao HOM05D005064 ORTHO05D006611 1.3e-50 205.3 595 30.6
Gorai.012G119100 Gossypium raimondii HOM05D005064 ORTHO05D006611 1.7e-50 204.9 630 29.2
Cpa.g.sc5.230 Carica papaya HOM05D005064 ORTHO05D006611 6.5e-50 203.0 598 30.8
CiPaw.09G214600 Carya illinoinensis HOM05D005064 ORTHO05D006611 3.0e-47 194.1 598 30.1
Sabra14G0144800 Salix brachista HOM05D005064 ORTHO05D006611 4.8e-45 186.8 630 30.2
Cc06_g00810 Coffea canephora HOM05D005064 ORTHO05D006611 1.1e-44 185.7 601 30.0
MSTRG.18977 Avicennia marina HOM05D005064 ORTHO05D006611 1.5e-43 181.8 622 30.1
Nn2g11003 Nelumbo nucifera HOM05D005064 ORTHO05D006611 4.5e-43 180.3 614 30.6
TAR633G1737 Trochodendron aralioides HOM05D005064 ORTHO05D006611 8.5e-42 176.0 307 40.1
Ciclev10013403m.g Citrus clementina HOM05D005064 ORTHO05D006611 1.4e-39 168.7 317 37.2
Oeu026978.1 Olea europaea HOM05D005064 ORTHO05D006611 3.0e-39 167.5 305 38.7
Gohir.A04G095400 Gossypium hirsutum HOM05D005064 ORTHO05D006611 3.9e-39 167.2 310 37.4
Sopen02g008440 Solanum pennellii HOM05D005064 ORTHO05D006611 8.8e-39 166.0 620 27.6
Gohir.D04G135300 Gossypium hirsutum HOM05D005064 ORTHO05D006611 3.7e-37 160.6 310 36.1
Solyc02g050200.2 Solanum lycopersicum HOM05D005064 ORTHO05D006611 4.8e-37 160.2 610 27.9
Hund25531 Selenicereus undatus HOM05D005064 ORTHO05D006611 6.3e-37 159.8 603 27.7
Peaxi162Scf00744g00354 Petunia axillaris HOM05D005064 ORTHO05D006611 8.2e-37 159.5 627 27.1
CANSAT35G0044 Cannabis sativa HOM05D005064 ORTHO05D006611 1.4e-36 158.7 318 36.8
Eucgr.K02953 Eucalyptus grandis HOM05D005064 ORTHO05D006611 3.1e-36 157.5 309 37.2
SGA_v2.0_scaffold85G26687 Striga asiatica HOM05D005064 ORTHO05D006611 3.1e-36 157.5 627 28.1
CsaV3_3G033440 Cucumis sativus L. HOM05D005064 ORTHO05D006611 2.6e-35 154.5 595 28.2
ClCG10G022430 Citrullus lanatus HOM05D005064 ORTHO05D006611 5.9e-35 153.3 244 42.6
Sc07g0001460 Simmondsia chinensis HOM05D005064 ORTHO05D006611 1.3e-34 152.1 631 28.1
SalBow5G0042 Salvia bowleyana HOM05D005064 ORTHO05D006611 2.2e-34 151.4 619 27.6
SalBow5G1296 Salvia bowleyana HOM05D005064 ORTHO05D006611 2.2e-34 151.4 619 27.6
RcHm_v2.0_Chr3g0484931 Rosa chinensis HOM05D005064 ORTHO05D006611 2.9e-34 151.0 235 43.0
MELO3C009135.2 Cucumis melo HOM05D005064 ORTHO05D006611 1.4e-33 148.7 595 28.1
Sed0013669 Sechium edule HOM05D005064 ORTHO05D006611 4.2e-33 147.1 250 41.2
Nitab4.5_0010437g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 1.2e-32 145.6 623 26.6
Prupe.4G287200 Prunus persica HOM05D005064 ORTHO05D006611 4.7e-32 143.7 251 39.8
ECA234G3016 Erigeron canadensis HOM05D005064 ORTHO05D006611 5.2e-31 140.2 540 27.6
Ah.12g059020 Amaranthus hybridus HOM05D005064 ORTHO05D006611 8.8e-31 139.4 598 27.3
Thhalv10027627m.g Eutrema salsugineum HOM05D005064 ORTHO05D006611 8.8e-31 139.4 595 27.1
EL10Ac5g12491 Beta vulgaris HOM05D005064 ORTHO05D006611 5.7e-30 136.7 604 26.8
AL6G10420 Arabidopsis lyrata HOM05D005064 ORTHO05D006611 7.4e-30 136.3 630 26.7
HanXRQChr15g0486851 Helianthus annuus HOM05D005064 ORTHO05D006611 9.7e-30 136.0 622 27.5
CARHR211980 Cardamine hirsuta HOM05D005064 ORTHO05D006611 1.3e-29 135.6 587 27.1
Carub.0006s0020 Capsella rubella HOM05D005064 ORTHO05D006611 2.2e-29 134.8 634 27.0
Nitab4.5_0021252g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 2.2e-29 134.8 323 34.4
Aa31sc411G40 Aethionema arabicum HOM05D005064 ORTHO05D006611 4.8e-29 133.7 549 29.3
Aa31LG1G23250 Aethionema arabicum HOM05D005064 ORTHO05D006611 1.1e-28 132.5 254 43.3
AT5G01630 Arabidopsis thaliana HOM05D005064 ORTHO05D006611 7.0e-28 129.8 246 38.2
A05p16640 Brassica napus HOM05D005064 ORTHO05D006611 9.1e-28 129.4 609 27.1
Thhalv10012491m.g Eutrema salsugineum HOM05D005064 ORTHO05D006611 9.1e-28 129.4 245 36.3
BcaB01g06242 Brassica carinata HOM05D005064 ORTHO05D006611 2.0e-27 128.3 245 38.0
AUR62030766 Chenopodium quinoa HOM05D005064 ORTHO05D006611 2.0e-27 128.3 611 27.8
CAN.G989.4 Capsicum annuum HOM05D005064 ORTHO05D006611 2.6e-27 127.9 246 36.2
THA.LOC104798645 Tarenaya hassleriana HOM05D005064 ORTHO05D006611 2.6e-27 127.9 261 37.2
BraA05t20569Z Brassica rapa HOM05D005064 ORTHO05D006611 4.5e-27 127.1 609 27.1
BcaC08g44292 Brassica carinata HOM05D005064 ORTHO05D006611 1.3e-26 125.6 599 26.5
C06p17140 Brassica napus HOM05D005064 ORTHO05D006611 1.3e-26 125.6 601 26.8
Haze_21131 Corylus avellana HOM05D005064 ORTHO05D006611 1.3e-26 125.6 309 33.7
AT4G00020 Arabidopsis thaliana HOM05D005064 ORTHO05D006611 2.9e-26 124.4 240 39.2
Haze_21134 Corylus avellana HOM05D005064 ORTHO05D006611 3.8e-26 124.0 309 33.3
arahy.Tifrunner.gnm1.ann1.168PWC Arachis hypogaea HOM05D005064 ORTHO05D006611 6.5e-26 123.2 529 26.3
AUR62030526 Chenopodium quinoa HOM05D005064 ORTHO05D006611 1.9e-25 121.7 606 27.9
Sp7g05130 Schrenkiella parvula HOM05D005064 ORTHO05D006611 5.5e-25 120.2 592 25.7
BolC6t36909H Brassica oleracea HOM05D005064 ORTHO05D006611 2.7e-24 117.9 628 26.3
FAN28G2142 Fragaria x ananassa HOM05D005064 ORTHO05D006611 2.7e-24 117.9 586 29.7
BcaB04g17743 Brassica carinata HOM05D005064 ORTHO05D006611 1.0e-23 115.9 241 35.3
Lsat_1_v5_gn_5_149520 Lactuca sativa HOM05D005064 ORTHO05D006611 1.4e-23 115.5 246 36.2
A03p00180 Brassica napus HOM05D005064 ORTHO05D006611 1.8e-23 115.2 242 36.0
BraA03t09408Z Brassica rapa HOM05D005064 ORTHO05D006611 1.8e-23 115.2 242 36.0
Phvul.006G005800 Phaseolus vulgaris HOM05D005064 ORTHO05D006611 2.3e-23 114.8 230 36.5
THA.LOC104816179 Tarenaya hassleriana HOM05D005064 ORTHO05D006611 5.2e-23 113.6 658 25.1
FAN23G3111 Fragaria x ananassa HOM05D005064 ORTHO05D006611 6.7e-23 113.2 586 29.7
arahy.Tifrunner.gnm1.ann1.XPQW08 Arachis hypogaea HOM05D005064 ORTHO05D006611 8.8e-23 112.8 531 26.0
MD01G1008700 Malus domestica HOM05D005064 ORTHO05D006611 3.3e-22 110.9 228 36.4
Lj6g0012785 Lotus japonicus HOM05D005064 ORTHO05D006611 4.4e-22 110.5 583 25.7
Aqoxy2G00779 Aquilegia oxysepala HOM05D005064 ORTHO05D006611 5.7e-22 110.2 318 31.4
Ca_16367_v3 Cicer arietinum L. HOM05D005064 ORTHO05D006611 7.5e-22 109.8 250 36.0
COL.COLO4_14461 Corchorus olitorius HOM05D005064 ORTHO05D006611 7.5e-22 109.8 254 33.1
BcaB01g06109 Brassica carinata HOM05D005064 ORTHO05D006611 6.3e-21 106.7 274 35.0
C03p00330 Brassica napus HOM05D005064 ORTHO05D006611 6.3e-21 106.7 274 35.0
BolC3t12595H Brassica oleracea HOM05D005064 ORTHO05D006611 6.3e-21 106.7 274 35.0
PSO339G1571 Papaver somniferum HOM05D005064 ORTHO05D006611 8.2e-21 106.3 653 32.8
Glyma.13G010700 Glycine max HOM05D005064 ORTHO05D006611 1.8e-20 105.1 241 36.1
Lalb_Chr22g0360891 Lupinus albus HOM05D005064 ORTHO05D006611 1.8e-20 105.1 528 25.4
FvH4_1g25820 Fragaria vesca HOM05D005064 ORTHO05D006611 2.4e-20 104.8 215 36.3
FAN19G0240 Fragaria x ananassa HOM05D005064 ORTHO05D006611 3.1e-20 104.4 215 36.3
PSO801G0135 Papaver somniferum HOM05D005064 ORTHO05D006611 3.1e-20 104.4 646 33.4
Psat5g101280 Pisum sativum HOM05D005064 ORTHO05D006611 3.1e-20 104.4 254 35.0
ATR0594G137 Amborella trichopoda HOM05D005064 ORTHO05D006611 5.3e-20 103.6 544 25.9
SHI12869 Sapria himalayana HOM05D005064 ORTHO05D006611 5.3e-20 103.6 282 35.1
Medtr3g083250 Medicago truncatula HOM05D005064 ORTHO05D006611 4.5e-19 100.5 234 34.6
TPR.G19329 Trifolium pratense HOM05D005064 ORTHO05D006611 7.7e-19 99.8 305 31.1
VMungo0540G1710 Vigna mungo HOM05D005064 ORTHO05D006611 1.3e-18 99.0 237 35.9
Os01g0164800 Oryza sativa ssp. japonica HOM05D005064 ORTHO05D006611 5.5e-17 93.6 294 30.3
unitig_21.g20911 Utricularia gibba HOM05D005064 ORTHO05D006611 5.2e-15 87.0 270 31.9
Ah.11g042510 Amaranthus hybridus HOM05D005064 ORTHO05D006611 1.2e-14 85.9 177 38.4
DCAR_030962 Daucus carota HOM05D005064 ORTHO05D008158 8.5e-10 69.7 99 41.4
Nitab4.5_0006212g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 8.5e-10 69.7 176 31.2
Zm00001eb419130 Zea mays HOM05D005064 ORTHO05D006611 2.5e-09 68.2 246 31.3
Medtr0191s0030 Medicago truncatula HOM05D005064 ORTHO05D006611 8.0e-08 63.2 260 28.1
Sabra16G0120100 Salix brachista HOM05D005064 ORTHO05D050424 1.4e-07 62.4 81 42.0
CDE04G0109 Ceratophyllum demersum HOM05D005064 ORTHO05D006611 3.0e-07 61.2 325 25.8


User provided reference genes

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