Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019737 Camellia sinensis var. sinensis HOM05D005980 ORTHO05D007618 1.2e-305 1052.4 533 100.0
CSS0007144 Camellia sinensis var. sinensis HOM05D005980 ORTHO05D007618 1.2e-300 1035.8 533 98.3
Actinidia13438 Actinidia chinensis HOM05D005980 ORTHO05D007618 7.4e-255 883.6 535 84.3
Dinv21517 Davidia involucrata HOM05D005980 ORTHO05D007618 1.7e-243 845.9 533 81.1
Oeu032723.1 Olea europaea HOM05D005980 ORTHO05D007618 5.0e-235 817.8 533 77.7
PGSC0003DMG402021097 Solanum tuberosum HOM05D005980 ORTHO05D007618 8.2e-230 800.4 532 75.8
Solyc02g070390.3 Solanum lycopersicum HOM05D005980 ORTHO05D007618 1.8e-229 799.3 532 75.8
Sopen02g019470 Solanum pennellii HOM05D005980 ORTHO05D007618 3.1e-229 798.5 532 75.6
MSTRG.16268 Avicennia marina HOM05D005980 ORTHO05D007618 7.0e-229 797.3 536 75.9
GSVIVG01021555001 Vitis vinifera HOM05D005980 ORTHO05D007618 1.4e-226 789.6 507 79.1
Nitab4.5_0000869g0050 Nicotiana tabacum HOM05D005980 ORTHO05D007618 3.1e-221 771.9 535 73.8
CiPaw.09G119300 Carya illinoinensis HOM05D005980 ORTHO05D007618 4.5e-220 768.1 535 75.1
Peaxi162Scf00670g00346 Petunia axillaris HOM05D005980 ORTHO05D007618 1.3e-219 766.5 480 79.6
Hma1.2p1_0586F.1_g183830 Hydrangea macrophylla HOM05D005980 ORTHO05D007618 2.2e-219 765.8 469 82.7
Cc09_g08730 Coffea canephora HOM05D005980 ORTHO05D007618 6.5e-219 764.2 535 74.2
Prupe.4G086000 Prunus persica HOM05D005980 ORTHO05D007618 4.2e-218 761.5 534 73.0
Thecc.06G143900 Theobroma cacao HOM05D005980 ORTHO05D007618 4.2e-218 761.5 533 74.3
Lj1A1168T68 Lonicera japonica HOM05D005980 ORTHO05D007618 7.2e-218 760.8 501 76.2
Gohir.D05G148400 Gossypium hirsutum HOM05D005980 ORTHO05D007618 9.4e-218 760.4 534 74.3
Ciclev10014878m.g Citrus clementina HOM05D005980 ORTHO05D007618 1.8e-216 756.1 536 73.7
Eucgr.D00262 Eucalyptus grandis HOM05D005980 ORTHO05D007618 2.2e-214 749.2 554 72.2
QL05p054997 Quercus lobata HOM05D005980 ORTHO05D007618 3.7e-214 748.4 534 74.2
PGR102G3344 Punica granatum HOM05D005980 ORTHO05D007618 4.8e-214 748.0 550 72.9
Nn3g20318 Nelumbo nucifera HOM05D005980 ORTHO05D007618 8.2e-214 747.3 537 74.5
FvH4_3g05000 Fragaria vesca HOM05D005980 ORTHO05D007618 2.4e-213 745.7 556 69.6
MD10G1257800 Malus domestica HOM05D005980 ORTHO05D007618 5.3e-213 744.6 537 72.1
RcHm_v2.0_Chr5g0014971 Rosa chinensis HOM05D005980 ORTHO05D007618 2.0e-212 742.7 554 70.2
Dinv32210 Davidia involucrata HOM05D005980 ORTHO05D007618 2.9e-211 738.8 443 85.8
Rhsim13G0118300 Rhododendron simsii HOM05D005980 ORTHO05D007618 6.5e-211 737.6 537 73.0
FAN21G1725 Fragaria x ananassa HOM05D005980 ORTHO05D007618 8.5e-211 737.3 563 68.7
DCAR_003883 Daucus carota HOM05D005980 ORTHO05D007618 1.1e-210 736.9 512 73.2
COL.COLO4_31005 Corchorus olitorius HOM05D005980 ORTHO05D007618 1.5e-210 736.5 544 70.8
FAN11G3650 Fragaria x ananassa HOM05D005980 ORTHO05D007618 1.9e-210 736.1 563 68.6
Haze_05690 Corylus avellana HOM05D005980 ORTHO05D007618 7.2e-210 734.2 592 68.1
Migut.M01863 Erythranthe guttata HOM05D005980 ORTHO05D007618 1.2e-209 733.4 537 70.6
TAR626G0855 Trochodendron aralioides HOM05D005980 ORTHO05D007618 1.0e-208 730.3 536 72.0
FAN16G3332 Fragaria x ananassa HOM05D005980 ORTHO05D007618 3.4e-207 725.3 524 71.9
Nitab4.5_0005963g0020 Nicotiana tabacum HOM05D005980 ORTHO05D007618 3.4e-207 725.3 535 70.1
ClCG01G024920 Citrullus lanatus HOM05D005980 ORTHO05D007618 1.1e-205 720.3 536 70.1
Aqoxy4G00005 Aquilegia oxysepala HOM05D005980 ORTHO05D007618 1.4e-205 719.9 510 72.7
Gorai.009G152600 Gossypium raimondii HOM05D005980 ORTHO05D007618 1.4e-205 719.9 506 73.9
SalBow8G1809 Salvia bowleyana HOM05D005980 ORTHO05D007618 2.4e-205 719.2 535 69.9
CsaV3_6G052070 Cucumis sativus L. HOM05D005980 ORTHO05D007618 7.0e-205 717.6 537 70.4
Potri.001G358400 Populus trichocarpa HOM05D005980 ORTHO05D007618 7.0e-205 717.6 540 70.4
Sabra16G0236200 Salix brachista HOM05D005980 ORTHO05D007618 1.2e-204 716.8 551 69.1
EL10Ac1g01827 Beta vulgaris HOM05D005980 ORTHO05D007618 3.8e-203 711.8 508 72.6
PSO675G5271 Papaver somniferum HOM05D005980 ORTHO05D007618 1.1e-202 710.3 537 70.4
Gohir.A05G146100 Gossypium hirsutum HOM05D005980 ORTHO05D007618 2.5e-202 709.1 534 70.2
Sed0023515 Sechium edule HOM05D005980 ORTHO05D007618 1.2e-201 706.8 538 69.0
PSO541G1780 Papaver somniferum HOM05D005980 ORTHO05D007618 2.8e-201 705.7 536 70.0
MELO3C007103.2 Cucumis melo HOM05D005980 ORTHO05D007618 2.3e-200 702.6 557 67.7
AUR62025366 Chenopodium quinoa HOM05D005980 ORTHO05D007618 3.0e-200 702.2 534 69.1
Sed0012577 Sechium edule HOM05D005980 ORTHO05D007618 4.9e-198 694.9 538 68.6
AUR62028384 Chenopodium quinoa HOM05D005980 ORTHO05D007618 1.1e-197 693.7 534 69.1
TWI73G1267 Tripterygium wilfordii HOM05D005980 ORTHO05D007618 2.4e-197 692.6 505 70.7
SGA_v2.0_scaffold51G18642 Striga asiatica HOM05D005980 ORTHO05D007618 1.2e-196 690.3 531 69.5
Lj2C323G3 Lonicera japonica HOM05D005980 ORTHO05D007618 2.7e-196 689.1 496 72.8
CANSAT35G0447 Cannabis sativa HOM05D005980 ORTHO05D007618 3.5e-196 688.7 544 67.5
Manes.15G125300 Manihot esculenta HOM05D005980 ORTHO05D007618 1.7e-195 686.4 451 78.0
Lj6g0019056 Lotus japonicus HOM05D005980 ORTHO05D007618 7.3e-194 681.0 501 71.7
ATR1098G083 Amborella trichopoda HOM05D005980 ORTHO05D007618 3.1e-192 675.6 517 70.0
THA.LOC104820671 Tarenaya hassleriana HOM05D005980 ORTHO05D007618 1.5e-191 673.3 546 66.3
Phvul.006G168100 Phaseolus vulgaris HOM05D005980 ORTHO05D007618 2.0e-191 672.9 483 72.7
A05p11020 Brassica napus HOM05D005980 ORTHO05D007618 4.4e-191 671.8 545 66.2
Glyma.13G221300 Glycine max HOM05D005980 ORTHO05D007618 4.4e-191 671.8 493 72.2
FAN25G0178 Fragaria x ananassa HOM05D005980 ORTHO05D007618 5.8e-191 671.4 590 63.2
BraA05t20047Z Brassica rapa HOM05D005980 ORTHO05D007618 9.8e-191 670.6 545 66.1
AT2G34640 Arabidopsis thaliana HOM05D005980 ORTHO05D007618 2.2e-190 669.5 545 65.5
C04p14140 Brassica napus HOM05D005980 ORTHO05D007618 3.7e-190 668.7 543 66.3
BcaC02g11540 Brassica carinata HOM05D005980 ORTHO05D007618 1.4e-189 666.8 543 66.3
BolC4t23002H Brassica oleracea HOM05D005980 ORTHO05D007618 1.4e-189 666.8 543 66.3
AL4G30630 Arabidopsis lyrata HOM05D005980 ORTHO05D007618 2.4e-189 666.0 546 65.9
Aa31LG10G6710 Aethionema arabicum HOM05D005980 ORTHO05D007618 5.4e-189 664.8 548 64.1
Psat1g191560 Pisum sativum HOM05D005980 ORTHO05D007618 5.4e-189 664.8 513 68.2
arahy.Tifrunner.gnm1.ann1.G1ZF0U Arachis hypogaea HOM05D005980 ORTHO05D007618 9.2e-189 664.1 514 68.7
Carub.0004s1633 Capsella rubella HOM05D005980 ORTHO05D007618 1.6e-188 663.3 548 64.4
arahy.Tifrunner.gnm1.ann1.PI6078 Arachis hypogaea HOM05D005980 ORTHO05D007618 6.0e-188 661.4 514 68.3
Thhalv10016502m.g Eutrema salsugineum HOM05D005980 ORTHO05D007618 3.9e-187 658.7 552 64.3
Medtr2g018740 Medicago truncatula HOM05D005980 ORTHO05D007618 6.6e-187 657.9 511 67.9
vmacro03427 Vaccinium macrocarpon HOM05D005980 ORTHO05D007618 6.6e-187 657.9 429 77.9
CARHR128740 Cardamine hirsuta HOM05D005980 ORTHO05D007618 1.5e-186 656.8 545 64.8
VMungo0540G0170 Vigna mungo HOM05D005980 ORTHO05D007618 4.3e-186 655.2 475 72.2
HanXRQChr10g0301191 Helianthus annuus HOM05D005980 ORTHO05D007618 4.7e-185 651.7 527 65.3
Sp4g16910 Schrenkiella parvula HOM05D005980 ORTHO05D007618 3.1e-184 649.0 550 64.5
Sc05g0005970 Simmondsia chinensis HOM05D005980 ORTHO05D007618 1.7e-182 643.3 457 71.6
TPR.G26225 Trifolium pratense HOM05D005980 ORTHO05D007618 3.5e-180 635.6 524 63.9
Lalb_Chr18g0055171 Lupinus albus HOM05D005980 ORTHO05D007618 6.0e-180 634.8 508 65.6
Lsat_1_v5_gn_9_33800 Lactuca sativa HOM05D005980 ORTHO05D007618 1.1e-178 630.6 514 64.6
unitig_578.g16128 Utricularia gibba HOM05D005980 ORTHO05D007618 1.1e-176 624.0 534 62.4
Ah.12g059810 Amaranthus hybridus HOM05D005980 ORTHO05D007618 6.4e-174 614.8 480 67.1
Ca_00513_v3 Cicer arietinum L. HOM05D005980 ORTHO05D007618 1.1e-173 614.0 463 70.0
BcaNung07262 Brassica carinata HOM05D005980 ORTHO05D007618 4.9e-166 588.6 432 70.8
ECA247G3302 Erigeron canadensis HOM05D005980 ORTHO05D007618 1.1e-162 577.4 452 66.2
Os01g0769900 Oryza sativa ssp. japonica HOM05D005980 ORTHO05D007618 7.6e-151 538.1 570 54.9
Zm00001eb152010 Zea mays HOM05D005980 ORTHO05D007618 7.1e-149 531.6 501 57.9
Hma1.2p1_0586F.1_g183820 Hydrangea macrophylla HOM05D005980 ORTHO05D007618 2.6e-111 406.8 270 76.3
HPP92_001893 Vanilla planifolia HOM05D005980 ORTHO05D007618 5.2e-107 392.5 322 63.4
MD05G1278700 Malus domestica HOM05D005980 ORTHO05D007618 4.4e-106 389.4 298 69.5
MBI02_g18932_MAGBIO Magnolia biondii HOM05D005980 ORTHO05D007618 9.1e-96 355.1 271 68.3
AagrBONN_evm.TU.Sc2ySwM_228.94 Anthoceros agrestis HOM05D005980 ORTHO05D007618 4.1e-88 329.7 410 45.4
CDE01G0059 Ceratophyllum demersum HOM05D005980 ORTHO05D007618 1.2e-87 328.2 309 59.2
Cpa.g.sc17.57 Carica papaya HOM05D005980 ORTHO05D007618 2.7e-87 327.0 268 64.9
Cpa.g.sc17.56 Carica papaya HOM05D005980 ORTHO05D007618 4.1e-80 303.1 160 88.8
Mapoly0061s0053 Marchantia polymorpha HOM05D005980 ORTHO05D007618 2.3e-78 297.4 419 40.6
Cpa.g.c47879 Carica papaya HOM05D005980 ORTHO05D007618 1.4e-72 278.1 197 71.1
Pp3c3_26950 Physcomitrium patens HOM05D005980 ORTHO05D007618 6.8e-67 259.2 499 35.1
Pp3c10_12300 Physcomitrium patens HOM05D005980 ORTHO05D007618 1.3e-65 255.0 406 37.7
Hma1.2p1_0581F.1_g182930 Hydrangea macrophylla HOM05D005980 ORTHO05D007618 1.5e-61 241.5 147 83.0
SGA_v2.0_scaffold230G43391 Striga asiatica HOM05D005980 ORTHO05D007618 9.9e-58 228.8 125 81.6
SGA_v2.0_scaffold6G03478 Striga asiatica HOM05D005980 ORTHO05D007618 4.9e-57 226.5 125 84.0
arahy.Tifrunner.gnm1.ann1.D5DAI6 Arachis hypogaea HOM05D005980 ORTHO05D007618 1.9e-53 214.5 263 51.3
Lsat_1_v5_gn_1_94041 Lactuca sativa HOM05D005980 ORTHO05D007618 2.6e-50 204.1 144 68.8
HPP92_001892 Vanilla planifolia HOM05D005980 ORTHO05D007618 5.4e-48 196.4 165 64.2
CBR_g48045 Chara braunii HOM05D005980 ORTHO05D007618 1.0e-46 192.2 249 43.8
MD05G1278800 Malus domestica HOM05D005980 ORTHO05D007618 2.2e-33 147.9 80 82.5
Cpa.g.sc17.55 Carica papaya HOM05D005980 ORTHO05D007618 4.2e-32 143.7 106 77.4
Actinidia33673 Actinidia chinensis HOM05D005980 ORTHO05D007618 7.1e-32 142.9 183 51.9
SEGI_30301 Sequoiadendron giganteum HOM05D005980 ORTHO05D007618 6.0e-31 139.8 222 41.0
Glyma.15G091200 Glycine max HOM05D005980 ORTHO05D007618 7.6e-26 122.9 100 68.0
HanXRQChr10g0301121 Helianthus annuus HOM05D005980 ORTHO05D007618 1.9e-24 118.2 114 55.3
vmacro03428 Vaccinium macrocarpon HOM05D005980 ORTHO05D007618 9.3e-24 115.9 99 68.7
MBI02_g26594_MAGBIO Magnolia biondii HOM05D005980 ORTHO05D007618 5.7e-21 106.7 81 74.1
Actinidia33672 Actinidia chinensis HOM05D005980 ORTHO05D007618 1.1e-19 102.4 76 75.0
arahy.Tifrunner.gnm1.ann1.MPA65D Arachis hypogaea HOM05D005980 ORTHO05D007618 1.5e-18 98.6 53 86.8
Haze_05663 Corylus avellana HOM05D005980 ORTHO05D007618 1.9e-16 91.7 112 53.6
Lsat_1_v5_gn_1_94021 Lactuca sativa HOM05D005980 ORTHO05D007618 3.5e-15 87.4 139 46.8
Lsat_1_v5_gn_7_71901 Lactuca sativa HOM05D002457 ORTHO05D005750 5.1e-14 83.6 93 47.3
MSTRG.16269 Avicennia marina HOM05D005980 ORTHO05D007618 3.3e-13 80.9 49 71.4
MD05G1278900 Malus domestica HOM05D005980 ORTHO05D007618 9.0e-11 72.8 67 62.7
Cpa.g.c48158 Carica papaya HOM05D005980 ORTHO05D007618 1.6e-07 62.0 32 84.4


User provided reference genes

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