Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019608 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 2.4e-46 188.3 86 100.0
Duzib132G0613 Durio zibethinus HOM05D005339 ORTHO05D006561 2.2e-44 181.8 83 98.8
Actinidia20485 Actinidia chinensis HOM05D005339 ORTHO05D006561 6.5e-44 180.3 82 100.0
arahy.Tifrunner.gnm1.ann1.RMHT0B Arachis hypogaea HOM05D005339 ORTHO05D006561 6.5e-44 180.3 82 100.0
arahy.Tifrunner.gnm1.ann1.UV505Z Arachis hypogaea HOM05D005339 ORTHO05D006561 6.5e-44 180.3 82 100.0
CSS0049457 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 6.5e-44 180.3 82 100.0
ClCG02G011380 Citrullus lanatus HOM05D005339 ORTHO05D006561 6.5e-44 180.3 82 100.0
Ciclev10028803m.g Citrus clementina HOM05D005339 ORTHO05D006561 6.5e-44 180.3 82 100.0
Cc11_g02780 Coffea canephora HOM05D005339 ORTHO05D006561 6.5e-44 180.3 82 100.0
CsaV3_2G015710 Cucumis sativus L. HOM05D005339 ORTHO05D006561 6.5e-44 180.3 82 100.0
DCAR_022955 Daucus carota HOM05D005339 ORTHO05D006561 6.5e-44 180.3 82 100.0
DCAR_022956 Daucus carota HOM05D005339 ORTHO05D006561 6.5e-44 180.3 82 100.0
Eucgr.I01375 Eucalyptus grandis HOM05D005339 ORTHO05D006561 6.5e-44 180.3 82 100.0
Glyma.08G042200 Glycine max HOM05D005339 ORTHO05D006561 6.5e-44 180.3 82 100.0
HanXRQChr15g0478851 Helianthus annuus HOM05D005339 ORTHO05D006561 6.5e-44 180.3 82 100.0
Hma1.2p1_0032F.1_g019680 Hydrangea macrophylla HOM05D005339 ORTHO05D006561 6.5e-44 180.3 82 100.0
Lj9C389T6 Lonicera japonica HOM05D005339 ORTHO05D006561 6.5e-44 180.3 82 100.0
MD12G1008800 Malus domestica HOM05D005339 ORTHO05D006561 6.5e-44 180.3 82 100.0
MD14G1006100 Malus domestica HOM05D005339 ORTHO05D006561 6.5e-44 180.3 82 100.0
Phvul.002G320300 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 6.5e-44 180.3 82 100.0
Psat7g008680 Pisum sativum HOM05D005339 ORTHO05D006561 6.5e-44 180.3 82 100.0
Potri.009G129700 Populus trichocarpa HOM05D005339 ORTHO05D006561 6.5e-44 180.3 82 100.0
Prupe.7G010600 Prunus persica HOM05D005339 ORTHO05D006561 6.5e-44 180.3 82 100.0
PGR142G1539 Punica granatum HOM05D005339 ORTHO05D006561 6.5e-44 180.3 82 100.0
Sc08g0003210 Simmondsia chinensis HOM05D005339 ORTHO05D006561 6.5e-44 180.3 82 100.0
SGA_v2.0_scaffold58G20457 Striga asiatica HOM05D005339 ORTHO05D006561 6.5e-44 180.3 82 100.0
Thecc.02G066900 Theobroma cacao HOM05D005339 ORTHO05D006561 6.5e-44 180.3 82 100.0
VMungo0251G0038 Vigna mungo HOM05D005339 ORTHO05D006561 6.5e-44 180.3 82 100.0
VMungo0251G1189 Vigna mungo HOM05D005339 ORTHO05D006561 6.5e-44 180.3 82 100.0
AagrBONN_evm.TU.Sc2ySwM_344.4430 Anthoceros agrestis HOM05D005339 ORTHO05D006561 8.5e-44 179.9 82 98.8
CAN.G588.26 Capsicum annuum HOM05D005339 ORTHO05D006561 8.5e-44 179.9 82 98.8
Cfa005184 Carpinus fangiana HOM05D005339 ORTHO05D006561 8.5e-44 179.9 82 98.8
Haze_02197 Corylus avellana HOM05D005339 ORTHO05D006561 8.5e-44 179.9 82 98.8
Dinv41975 Davidia involucrata HOM05D005339 ORTHO05D006561 8.5e-44 179.9 82 98.8
Gohir.A03G203200 Gossypium hirsutum HOM05D005339 ORTHO05D006561 8.5e-44 179.9 82 98.8
Gohir.D02G224500 Gossypium hirsutum HOM05D005339 ORTHO05D006561 8.5e-44 179.9 82 98.8
Gorai.005G252300 Gossypium raimondii HOM05D005339 ORTHO05D006561 8.5e-44 179.9 82 98.8
Nitab4.5_0000283g0140 Nicotiana tabacum HOM05D005339 ORTHO05D006561 8.5e-44 179.9 82 98.8
Nitab4.5_0000980g0240 Nicotiana tabacum HOM05D005339 ORTHO05D006561 8.5e-44 179.9 82 98.8
Peaxi162Scf00362g01036 Petunia axillaris HOM05D005339 ORTHO05D006561 8.5e-44 179.9 82 98.8
Solyc01g111140.3 Solanum lycopersicum HOM05D005339 ORTHO05D006561 8.5e-44 179.9 82 98.8
Sopen01g053200 Solanum pennellii HOM05D005339 ORTHO05D006561 8.5e-44 179.9 82 98.8
PGSC0003DMG400001633 Solanum tuberosum HOM05D005339 ORTHO05D006561 8.5e-44 179.9 82 98.8
THA.LOC104807785 Tarenaya hassleriana HOM05D005339 ORTHO05D006561 8.5e-44 179.9 82 98.8
HPP92_028582 Vanilla planifolia HOM05D005339 ORTHO05D006561 8.5e-44 179.9 82 98.8
GSVIVG01024083001 Vitis vinifera HOM05D005339 ORTHO05D006561 8.5e-44 179.9 82 98.8
AL4G10240 Arabidopsis lyrata HOM05D005339 ORTHO05D006561 1.1e-43 179.5 82 97.6
AT2G21150 Arabidopsis thaliana HOM05D005339 ORTHO05D006561 1.1e-43 179.5 82 97.6
BcaB08g34965 Brassica carinata HOM05D005339 ORTHO05D006561 1.1e-43 179.5 82 97.6
A09p58500 Brassica napus HOM05D005339 ORTHO05D006561 1.1e-43 179.5 82 97.6
C08p41800 Brassica napus HOM05D005339 ORTHO05D006561 1.1e-43 179.5 82 97.6
BolC8t51743H Brassica oleracea HOM05D005339 ORTHO05D006561 1.1e-43 179.5 82 97.6
BraA09t41237Z Brassica rapa HOM05D005339 ORTHO05D006561 1.1e-43 179.5 82 97.6
Carub.0004s0017 Capsella rubella HOM05D005339 ORTHO05D006561 1.1e-43 179.5 82 97.6
Thhalv10000232m.g Eutrema salsugineum HOM05D005339 ORTHO05D006561 1.1e-43 179.5 82 97.6
Sp4g00300 Schrenkiella parvula HOM05D005339 ORTHO05D006561 1.1e-43 179.5 82 97.6
Atru.chr5.3227 Acer truncatum HOM05D005339 ORTHO05D006561 1.4e-43 179.1 82 98.8
CANSAT25G3263 Cannabis sativa HOM05D005339 ORTHO05D006561 1.4e-43 179.1 82 98.8
CDE04G0258 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 1.4e-43 179.1 82 98.8
FvH4_1g25110 Fragaria vesca HOM05D005339 ORTHO05D006561 1.4e-43 179.1 82 98.8
FAN23G1071 Fragaria x ananassa HOM05D005339 ORTHO05D006561 1.4e-43 179.1 82 98.8
FAN26G3137 Fragaria x ananassa HOM05D005339 ORTHO05D006561 1.4e-43 179.1 82 98.8
FAN28G0542 Fragaria x ananassa HOM05D005339 ORTHO05D006561 1.4e-43 179.1 82 98.8
FAN28G2786 Fragaria x ananassa HOM05D005339 ORTHO05D006561 1.4e-43 179.1 82 98.8
Medtr8g105120 Medicago truncatula HOM05D005339 ORTHO05D006561 1.4e-43 179.1 82 98.8
RcHm_v2.0_Chr2g0122771 Rosa chinensis HOM05D005339 ORTHO05D006561 1.4e-43 179.1 82 98.8
Hund06405 Selenicereus undatus HOM05D005339 ORTHO05D006561 1.4e-43 179.1 82 98.8
TWI31G0803 Tripterygium wilfordii HOM05D005339 ORTHO05D006561 1.4e-43 179.1 82 98.8
vmacro02249 Vaccinium macrocarpon HOM05D005339 ORTHO05D006561 1.4e-43 179.1 82 98.8
CDE02G2588 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 1.9e-43 178.7 82 97.6
Manes.04G078200 Manihot esculenta HOM05D005339 ORTHO05D006561 1.9e-43 178.7 82 98.8
QL11p047539 Quercus lobata HOM05D005339 ORTHO05D006561 1.9e-43 178.7 81 98.8
QL11p047573 Quercus lobata HOM05D005339 ORTHO05D006561 1.9e-43 178.7 81 98.8
Sabra04G0112800 Salix brachista HOM05D005339 ORTHO05D006561 1.9e-43 178.7 82 97.6
Glyma.05G234700 Glycine max HOM05D005339 ORTHO05D006561 2.5e-43 178.3 82 98.8
Lalb_Chr11g0072011 Lupinus albus HOM05D005339 ORTHO05D006561 2.5e-43 178.3 82 98.8
Mapoly0015s0022 Marchantia polymorpha HOM05D005339 ORTHO05D006561 2.5e-43 178.3 82 97.6
Pp3c17_13560 Physcomitrium patens HOM05D005339 ORTHO05D006561 2.5e-43 178.3 82 96.3
SalBow6G1349 Salvia bowleyana HOM05D005339 ORTHO05D006561 2.5e-43 178.3 82 98.8
SMO117G0089 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 2.5e-43 178.3 82 97.6
TPR.G17076 Trifolium pratense HOM05D005339 ORTHO05D006561 2.5e-43 178.3 82 98.8
unitig_744.g24266 Utricularia gibba HOM05D005339 ORTHO05D006561 2.5e-43 178.3 82 98.8
CiPaw.05G077200 Carya illinoinensis HOM05D005339 ORTHO05D006561 3.2e-43 177.9 82 97.6
Oeu055639.3 Olea europaea HOM05D005339 ORTHO05D006561 3.2e-43 177.9 82 97.6
Rhsim11G0187800 Rhododendron simsii HOM05D005339 ORTHO05D006561 3.2e-43 177.9 82 97.6
C04p50370 Brassica napus HOM05D005339 ORTHO05D006561 4.2e-43 177.6 82 96.3
BolC4t26635H Brassica oleracea HOM05D005339 ORTHO05D006561 4.2e-43 177.6 82 96.3
BraA04t17225Z Brassica rapa HOM05D005339 ORTHO05D006561 4.2e-43 177.6 82 96.3
Migut.B00167 Erythranthe guttata HOM05D005339 ORTHO05D006561 4.2e-43 177.6 82 98.8
Os09g0535300 Oryza sativa ssp. japonica HOM05D005339 ORTHO05D006561 5.5e-43 177.2 82 97.6
Potri.004G168400 Populus trichocarpa HOM05D005339 ORTHO05D006561 5.5e-43 177.2 82 96.3
Sed0019675 Sechium edule HOM05D005339 ORTHO05D006561 5.5e-43 177.2 82 97.6
Zm00001eb103630 Zea mays HOM05D005339 ORTHO05D006561 5.5e-43 177.2 82 97.6
ATR0810G182 Amborella trichopoda HOM05D005339 ORTHO05D006561 7.2e-43 176.8 82 97.6
Aqoxy5G01796 Aquilegia oxysepala HOM05D005339 ORTHO05D006561 7.2e-43 176.8 82 97.6
MBI19_g09243_MAGBIO Magnolia biondii HOM05D005339 ORTHO05D006561 7.2e-43 176.8 82 97.6
LjContig00310g0009118 Lotus japonicus HOM05D005339 ORTHO05D006561 1.2e-42 176.0 82 96.3
Ah.01g009160 Amaranthus hybridus HOM05D005339 ORTHO05D006561 1.6e-42 175.6 82 95.1
AUR62010093 Chenopodium quinoa HOM05D005339 ORTHO05D006561 1.6e-42 175.6 82 95.1
CiPaw.06G125300 Carya illinoinensis HOM05D005339 ORTHO05D006561 1.0e-41 172.9 84 91.7
Sabra09G0099200 Salix brachista HOM05D005339 ORTHO05D006561 5.1e-41 170.6 93 87.1
PSO170G1371 Papaver somniferum HOM05D005339 ORTHO05D006561 2.6e-40 168.3 82 91.5
PSO700G0269 Papaver somniferum HOM05D005339 ORTHO05D006561 2.6e-40 168.3 82 91.5
ECA246G3996 Erigeron canadensis HOM05D005339 ORTHO05D006561 2.2e-39 165.2 75 100.0
Aa31LG7G15530 Aethionema arabicum HOM05D005339 ORTHO05D006561 2.8e-39 164.9 75 98.7
BcaC07g41172 Brassica carinata HOM05D005339 ORTHO05D006561 2.8e-39 164.9 75 98.7
FAN19G3054 Fragaria x ananassa HOM05D005339 ORTHO05D006561 5.0e-36 154.1 82 89.0
Ca_17265_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 1.1e-32 142.9 66 98.5
Ca_17286_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 1.1e-32 142.9 66 98.5
Nn7g36850 Nelumbo nucifera HOM05D005339 ORTHO05D006561 1.1e-32 142.9 66 97.0
EL10Ac9g21438 Beta vulgaris HOM05D005339 ORTHO05D006561 1.5e-32 142.5 66 95.5
COL.COLO4_17257 Corchorus olitorius HOM05D005339 ORTHO05D003646 3.3e-32 141.4 65 98.5
Lalb_Chr23g0275171 Lupinus albus HOM05D005339 ORTHO05D006561 3.3e-32 141.4 66 97.0
A04p15920 Brassica napus HOM05D005339 ORTHO05D006561 7.4e-32 140.2 64 96.9
Lj4g0026543 Lotus japonicus HOM05D005339 ORTHO05D006561 7.4e-32 140.2 66 95.5
AUR62013089 Chenopodium quinoa HOM05D005339 ORTHO05D006561 1.3e-31 139.4 64 96.9
CBR_g47091 Chara braunii HOM05D005339 ORTHO05D006561 4.8e-31 137.5 72 84.7
Cre07.g341300 Chlamydomonas reinhardtii HOM05D005339 ORTHO05D006561 9.1e-30 133.3 79 73.4
MCO15G465 Micromonas commoda HOM05D005339 ORTHO05D006561 4.7e-26 120.9 77 67.5
PRCOL_00006995 Prasinoderma coloniale HOM05D005339 ORTHO05D006561 6.7e-25 117.1 76 67.1
TAR376G0223 Trochodendron aralioides HOM05D005339 ORTHO05D006561 1.6e-21 105.9 50 98.0
Phvul.002G320400 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 6.5e-20 100.5 45 100.0
Lsat_1_v5_gn_3_45301 Lactuca sativa HOM05D005339 ORTHO05D006561 5.5e-19 97.4 78 65.4
SMO274G0062 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 2.8e-15 85.1 64 65.6
RcHm_v2.0_Chr5g0045021 Rosa chinensis HOM05D005339 ORTHO05D006561 2.4e-14 82.0 42 88.1
SMO301G0014 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 2.3e-12 75.5 54 68.5
TPR.G17724 Trifolium pratense HOM05D005339 ORTHO05D006561 2.3e-12 75.5 41 90.2
QL11p047601 Quercus lobata HOM05D005339 ORTHO05D006561 2.5e-11 72.0 66 56.1
Actinidia00596 Actinidia chinensis HOM05D003396 ORTHO05D003646 7.2e-11 70.5 45 75.6
Migut.O00339 Erythranthe guttata HOM05D005339 ORTHO05D006561 9.5e-11 70.1 30 96.7
Cfa025584 Carpinus fangiana HOM05D005339 ORTHO05D006561 1.3e-07 59.7 102 34.3


User provided reference genes

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