Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019342 Camellia sinensis var. sinensis HOM05D005275 ORTHO05D006435 1.2e-115 419.9 212 100.0
Lj8A623T20 Lonicera japonica HOM05D005275 ORTHO05D006435 2.2e-93 345.9 212 82.5
Actinidia34231 Actinidia chinensis HOM05D005275 ORTHO05D006435 6.2e-88 327.8 199 83.9
Lsat_1_v5_gn_7_91160 Lactuca sativa HOM05D005275 ORTHO05D006435 1.4e-87 326.6 211 76.8
Hma1.2p1_1507F.1_g287690 Hydrangea macrophylla HOM05D005275 ORTHO05D006435 3.4e-86 322.0 209 78.9
HanXRQChr16g0505961 Helianthus annuus HOM05D005275 ORTHO05D006435 5.8e-86 321.2 212 76.4
Actinidia08664 Actinidia chinensis HOM05D005275 ORTHO05D006435 2.7e-83 312.4 178 87.1
HanXRQChr04g0128021 Helianthus annuus HOM05D005275 ORTHO05D006435 1.0e-82 310.5 212 74.5
Rhsim03G0210600 Rhododendron simsii HOM05D005275 ORTHO05D006435 3.0e-82 308.9 269 64.3
vmacro06395 Vaccinium macrocarpon HOM05D005275 ORTHO05D006435 7.3e-81 304.3 259 65.6
ECA236G4645 Erigeron canadensis HOM05D005275 ORTHO05D006435 3.6e-80 302.0 212 71.2
Cc01_g04130 Coffea canephora HOM05D005275 ORTHO05D006435 9.0e-79 297.4 213 71.4
EL10Ac3g05547 Beta vulgaris HOM05D005275 ORTHO05D006435 5.8e-78 294.7 212 71.2
Nn8g39914 Nelumbo nucifera HOM05D005275 ORTHO05D006435 9.9e-78 293.9 212 72.2
Cpa.g.sc69.87 Carica papaya HOM05D005275 ORTHO05D006435 4.9e-77 291.6 223 70.0
Ciclev10022175m.g Citrus clementina HOM05D005275 ORTHO05D006435 8.4e-77 290.8 223 65.5
GSVIVG01038570001 Vitis vinifera HOM05D005275 ORTHO05D006435 1.2e-75 287.0 222 68.9
CiPaw.06G045000 Carya illinoinensis HOM05D005275 ORTHO05D006435 1.6e-75 286.6 223 70.0
Duzib114G0832 Durio zibethinus HOM05D005275 ORTHO05D006435 1.6e-75 286.6 223 71.3
DCAR_008951 Daucus carota HOM05D005275 ORTHO05D006435 2.7e-75 285.8 212 70.3
TWI39G0072 Tripterygium wilfordii HOM05D005275 ORTHO05D006435 8.7e-74 280.8 223 67.3
Oeu060995.2 Olea europaea HOM05D005275 ORTHO05D006435 1.5e-73 280.0 223 67.7
Sc02g0003260 Simmondsia chinensis HOM05D005275 ORTHO05D006435 1.5e-73 280.0 239 64.9
AUR62002807 Chenopodium quinoa HOM05D005275 ORTHO05D006435 3.3e-73 278.9 212 68.4
Eucgr.H01489 Eucalyptus grandis HOM05D005275 ORTHO05D006435 2.1e-72 276.2 223 65.9
PGR042G0357 Punica granatum HOM05D005275 ORTHO05D006435 3.7e-72 275.4 223 65.0
Atru.chr1.1611 Acer truncatum HOM05D005275 ORTHO05D006435 6.2e-72 274.6 223 63.7
Hund20626 Selenicereus undatus HOM05D005275 ORTHO05D006435 1.1e-71 273.9 211 65.9
COL.COLO4_38546 Corchorus olitorius HOM05D005275 ORTHO05D006435 1.8e-71 273.1 222 67.1
MBI14_g34252_MAGBIO Magnolia biondii HOM05D005275 ORTHO05D006435 2.4e-71 272.7 212 67.5
Manes.01G140200 Manihot esculenta HOM05D005275 ORTHO05D006435 4.0e-71 271.9 223 65.0
THA.LOC104811989 Tarenaya hassleriana HOM05D005275 ORTHO05D006435 5.3e-71 271.6 223 64.1
CANSAT21G1202 Cannabis sativa HOM05D005275 ORTHO05D006435 6.9e-71 271.2 224 66.1
MSTRG.48 Avicennia marina HOM05D005275 ORTHO05D006435 1.2e-70 270.4 214 67.8
QL09p007976 Quercus lobata HOM05D005275 ORTHO05D006435 3.4e-70 268.9 223 64.1
Aqoxy7G03390 Aquilegia oxysepala HOM05D005275 ORTHO05D006435 7.6e-70 267.7 215 66.5
Cfa016214 Carpinus fangiana HOM05D005275 ORTHO05D006435 7.6e-70 267.7 224 65.2
Gohir.D05G289000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.3e-69 266.9 223 65.5
Solyc05g032880.3 Solanum lycopersicum HOM05D005275 ORTHO05D006435 2.2e-69 266.2 225 62.7
Gorai.009G304100 Gossypium raimondii HOM05D005275 ORTHO05D006435 3.8e-69 265.4 223 65.0
Gohir.A10G201500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 4.9e-69 265.0 223 65.0
Gohir.A11G223000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 4.9e-69 265.0 223 65.0
Gohir.A12G028500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 4.9e-69 265.0 223 65.0
TAR374G1406 Trochodendron aralioides HOM05D005275 ORTHO05D006435 6.5e-69 264.6 175 74.3
Potri.012G017300 Populus trichocarpa HOM05D005275 ORTHO05D006435 8.4e-69 264.2 223 64.6
Gohir.A05G287800 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.4e-68 263.5 223 65.0
Potri.012G121228 Populus trichocarpa HOM05D005275 ORTHO05D006435 1.4e-68 263.5 223 64.6
Gohir.A12G115900 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.9e-68 263.1 223 64.6
Gohir.D01G152400 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.9e-68 263.1 223 64.6
Gohir.D05G384500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.9e-68 263.1 223 64.6
Sed0020778 Sechium edule HOM05D005275 ORTHO05D006435 1.9e-68 263.1 225 64.4
Ah.13g074120 Amaranthus hybridus HOM05D000770 ORTHO05D000586 4.2e-68 261.9 224 63.8
Gohir.A04G061600 Gossypium hirsutum HOM05D005275 ORTHO05D006435 4.2e-68 261.9 223 64.6
Sopen05g023270 Solanum pennellii HOM05D005275 ORTHO05D006435 5.5e-68 261.5 225 61.8
Gohir.A08G051700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 7.1e-68 261.2 223 64.1
Thecc.10G105800 Theobroma cacao HOM05D005275 ORTHO05D006435 9.3e-68 260.8 208 69.2
ClCG05G009030 Citrullus lanatus HOM05D005275 ORTHO05D006435 6.0e-67 258.1 225 63.1
CsaV3_3G019750 Cucumis sativus L. HOM05D005275 ORTHO05D006435 1.3e-66 256.9 225 63.1
Glyma.16G061500 Glycine max HOM05D005275 ORTHO05D006435 1.3e-66 256.9 227 61.2
PSO421G0063 Papaver somniferum HOM05D005275 ORTHO05D006435 1.3e-66 256.9 219 63.5
Ciclev10023889m.g Citrus clementina HOM05D005275 ORTHO05D006435 1.8e-66 256.5 225 59.1
Glyma.19G085300 Glycine max HOM05D005275 ORTHO05D006435 2.3e-66 256.1 227 61.2
Lj3g0024506 Lotus japonicus HOM05D005275 ORTHO05D006435 2.3e-66 256.1 227 62.6
Lalb_Chr22g0360521 Lupinus albus HOM05D005275 ORTHO05D006435 2.3e-66 256.1 225 62.7
Migut.F01020 Erythranthe guttata HOM05D005275 ORTHO05D006435 3.0e-66 255.8 214 64.0
Glyma.06G288700 Glycine max HOM05D005275 ORTHO05D006435 3.0e-66 255.8 227 61.2
Haze_00229 Corylus avellana HOM05D005275 ORTHO05D006435 3.9e-66 255.4 215 65.1
Peaxi162Scf00251g01010 Petunia axillaris HOM05D005275 ORTHO05D006435 5.1e-66 255.0 220 60.9
AUR62014115 Chenopodium quinoa HOM05D005275 ORTHO05D006435 8.7e-66 254.2 268 54.1
CDE01G0034 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 1.9e-65 253.1 213 65.3
Sed0013694 Sechium edule HOM05D005275 ORTHO05D006435 1.9e-65 253.1 225 61.3
TPR.G34143 Trifolium pratense HOM05D005275 ORTHO05D006435 3.3e-65 252.3 227 61.7
Lj1C1021T21 Lonicera japonica HOM05D005275 ORTHO05D006435 4.3e-65 251.9 207 67.6
Psat7g227360 Pisum sativum HOM05D005275 ORTHO05D006435 4.3e-65 251.9 227 62.1
Ca_10483_v3 Cicer arietinum L. HOM05D005275 ORTHO05D006435 5.7e-65 251.5 227 61.7
Phvul.008G150700 Phaseolus vulgaris HOM05D005275 ORTHO05D006435 7.4e-65 251.1 227 60.8
Nitab4.5_0004499g0010 Nicotiana tabacum HOM05D005275 ORTHO05D006435 2.1e-64 249.6 213 61.0
RcHm_v2.0_Chr1g0381511 Rosa chinensis HOM05D005275 ORTHO05D006435 2.8e-64 249.2 225 60.9
Nitab4.5_0000006g0650 Nicotiana tabacum HOM05D005275 ORTHO05D006435 4.8e-64 248.4 213 61.0
Carub.0008s1327 Capsella rubella HOM05D005275 ORTHO05D006435 8.2e-64 247.7 221 58.8
Thhalv10014627m.g Eutrema salsugineum HOM05D005275 ORTHO05D006435 8.2e-64 247.7 220 56.8
arahy.Tifrunner.gnm1.ann1.T9K8GJ Arachis hypogaea HOM05D005275 ORTHO05D006435 1.1e-63 247.3 226 60.6
AL8G27700 Arabidopsis lyrata HOM05D005275 ORTHO05D006435 1.4e-63 246.9 221 57.0
Aa31LG3G9390 Aethionema arabicum HOM05D005626 ORTHO05D007372 2.4e-63 246.1 221 58.8
Peaxi162Scf00581g00021 Petunia axillaris HOM05D005275 ORTHO05D006435 3.1e-63 245.7 256 55.1
arahy.Tifrunner.gnm1.ann1.5IWG5U Arachis hypogaea HOM05D005275 ORTHO05D006435 5.3e-63 245.0 226 60.2
AT5G53070 Arabidopsis thaliana HOM05D005275 ORTHO05D006435 1.2e-62 243.8 221 56.6
arahy.Tifrunner.gnm1.ann1.AF7P3K Arachis hypogaea HOM05D005275 ORTHO05D006435 1.5e-62 243.4 226 59.3
Sabra12G0015200 Salix brachista HOM05D005275 ORTHO05D007032 2.0e-62 243.0 252 56.3
CARHR266090 Cardamine hirsuta HOM05D005275 ORTHO05D006435 3.4e-62 242.3 221 57.0
BcaC03g14459 Brassica carinata HOM05D005275 ORTHO05D006435 4.5e-62 241.9 220 57.3
FAN10G0352 Fragaria x ananassa HOM05D005275 ORTHO05D006435 4.5e-62 241.9 223 58.3
Medtr5g038540 Medicago truncatula HOM05D005275 ORTHO05D006435 5.8e-62 241.5 227 59.9
BcaB05g22006 Brassica carinata HOM05D000442 ORTHO05D007032 7.6e-62 241.1 220 56.8
ATR0564G295 Amborella trichopoda HOM05D005275 ORTHO05D006435 1.0e-61 240.7 197 63.5
BcaB08g35669 Brassica carinata HOM05D005275 ORTHO05D006435 1.0e-61 240.7 220 56.8
BcaC04g20510 Brassica carinata HOM05D005275 ORTHO05D006435 1.7e-61 240.0 220 56.4
C09p42780 Brassica napus HOM05D005275 ORTHO05D006435 1.7e-61 240.0 220 56.4
FAN01G0712 Fragaria x ananassa HOM05D000442 ORTHO05D007032 2.2e-61 239.6 218 58.7
Medtr1g067700 Medicago truncatula HOM05D005275 ORTHO05D006435 2.2e-61 239.6 227 59.5
Prupe.2G313400 Prunus persica HOM05D005275 ORTHO05D006435 2.2e-61 239.6 223 58.3
Sp6g15240 Schrenkiella parvula HOM05D005275 ORTHO05D006435 2.9e-61 239.2 220 56.4
BraA02t06194Z Brassica rapa HOM05D005275 ORTHO05D006435 6.5e-61 238.0 220 55.9
A02p11320 Brassica napus HOM05D005275 ORTHO05D006435 8.4e-61 237.7 220 55.9
A10p10560 Brassica napus HOM05D005275 ORTHO05D006435 8.4e-61 237.7 220 55.9
FAN10G2096 Fragaria x ananassa HOM05D000442 ORTHO05D007032 1.1e-60 237.3 222 58.1
MD07G1293600 Malus domestica HOM05D005275 ORTHO05D006435 2.5e-60 236.1 226 59.3
Os05g0528900 Oryza sativa ssp. japonica HOM05D005275 ORTHO05D006435 2.5e-60 236.1 187 65.2
BraA10t43140Z Brassica rapa HOM05D005275 ORTHO05D006435 3.2e-60 235.7 220 55.5
PSO675G7727 Papaver somniferum HOM05D005275 ORTHO05D006435 4.2e-60 235.3 208 61.5
C02p18700 Brassica napus HOM05D005275 ORTHO05D006435 5.5e-60 235.0 220 55.5
BolC9t57154H Brassica oleracea HOM05D005275 ORTHO05D006435 2.7e-59 232.6 228 54.4
SGA_v2.0_scaffold55G19785 Striga asiatica HOM05D005275 ORTHO05D006435 1.1e-57 227.3 189 64.0
BolC2t08015H Brassica oleracea HOM05D005275 ORTHO05D006435 4.3e-57 225.3 234 52.1
HPP92_008880 Vanilla planifolia HOM05D005275 ORTHO05D006435 2.8e-56 222.6 184 62.0
Zm00001eb199670 Zea mays HOM05D005275 ORTHO05D006435 2.8e-56 222.6 242 52.5
Gohir.D09G028700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.4e-55 220.3 202 61.4
SHI02356 Sapria himalayana HOM05D005275 ORTHO05D006435 6.9e-55 218.0 237 53.2
Hma1.2p1_1507F.1_g287680 Hydrangea macrophylla HOM05D005275 ORTHO05D006435 2.6e-54 216.1 134 79.9
CDE02G4591 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 3.6e-51 205.7 183 63.9
Gohir.A07G020100 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.0e-49 199.9 164 65.9
arahy.Tifrunner.gnm1.ann1.G3VF9V Arachis hypogaea HOM05D005275 ORTHO05D006435 3.1e-47 192.6 350 38.9
FAN03G2656 Fragaria x ananassa HOM05D005626 ORTHO05D007032 1.3e-45 187.2 195 53.8
PGSC0003DMG400005324 Solanum tuberosum HOM05D005275 ORTHO05D006435 1.4e-44 183.7 186 54.8
Gohir.A10G000100 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.1e-43 179.9 155 65.2
Sc20g0002940 Simmondsia chinensis HOM05D005275 ORTHO05D006435 2.1e-43 179.9 132 70.5
VMungo1383G0294 Vigna mungo HOM05D005275 ORTHO05D006435 2.6e-41 172.9 172 56.4
Dinv21061 Davidia involucrata HOM05D005275 ORTHO05D006435 7.4e-41 171.4 97 89.7
MELO3C019369.2 Cucumis melo HOM05D005275 ORTHO05D006435 6.3e-40 168.3 150 61.3
unitig_62.g23847 Utricularia gibba HOM05D002066 ORTHO05D001617 4.1e-39 165.6 161 56.5
Gohir.A12G032500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 7.0e-39 164.9 148 62.2
Duzib128G1952 Durio zibethinus HOM05D005275 ORTHO05D006435 2.7e-35 152.9 137 66.4
BcaB05g22010 Brassica carinata HOM05D005626 ORTHO05D007372 1.0e-34 151.0 148 57.4
Oeu037051.1 Olea europaea HOM05D005275 ORTHO05D006435 3.0e-34 149.4 116 65.5
FvH4_7g32000 Fragaria vesca HOM05D005275 ORTHO05D006435 4.0e-34 149.1 139 59.0
Aa31LG3G9400 Aethionema arabicum HOM05D005275 ORTHO05D006435 8.8e-34 147.9 138 60.1
Ciclev10024016m.g Citrus clementina HOM05D005275 ORTHO05D006435 5.3e-31 138.7 97 69.1
Pp3c9_14000 Physcomitrium patens HOM05D005275 ORTHO05D006435 9.1e-31 137.9 185 43.2
Mapoly0074s0056 Marchantia polymorpha HOM05D005275 ORTHO05D006435 6.5e-29 131.7 171 42.1
SMO334G0054 Selaginella moellendorffii HOM05D005275 ORTHO05D006435 6.1e-27 125.2 199 38.7
Lsat_1_v5_gn_9_70281 Lactuca sativa HOM05D005275 ORTHO05D006435 2.8e-24 116.3 140 52.9
CBR_g30099 Chara braunii HOM05D005275 ORTHO05D006435 6.3e-24 115.2 186 38.7
SEGI_07593 Sequoiadendron giganteum HOM05D005275 ORTHO05D006435 1.2e-22 110.9 91 60.4
Zm00001eb089870 Zea mays HOM05D005275 ORTHO05D006435 2.7e-22 109.8 106 53.8
Zm00001eb397120 Zea mays HOM05D005275 ORTHO05D006435 3.5e-22 109.4 82 64.6
Ciclev10023389m.g Citrus clementina HOM05D005275 ORTHO05D006435 9.4e-20 101.3 68 70.6
Sc21g0003940 Simmondsia chinensis HOM05D007402 ORTHO05D003673 9.4e-20 101.3 97 55.7
AagrBONN_evm.TU.Sc2ySwM_228.762 Anthoceros agrestis HOM05D005275 ORTHO05D006435 4.5e-14 82.4 128 39.8
QL09p008105 Quercus lobata HOM05D005275 ORTHO05D006435 4.3e-12 75.9 50 72.0
Aqoxy2G00110 Aquilegia oxysepala HOM05D005275 ORTHO05D006435 6.1e-11 72.0 54 68.5
MCO07G577 Micromonas commoda HOM05D005275 ORTHO05D006435 1.4e-07 60.8 174 31.0
CBR_g36656 Chara braunii HOM05D006252 ORTHO05D007909 9.2e-07 58.2 157 25.5


User provided reference genes

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