Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0017291 Camellia sinensis var. sinensis HOM05D004970 ORTHO05D005665 2.9e-102 375.2 182 100.0
CSS0041522 Camellia sinensis var. sinensis HOM05D004970 ORTHO05D005665 1.2e-58 230.3 128 91.4
Dinv17237 Davidia involucrata HOM05D004970 ORTHO05D005665 1.3e-54 216.9 138 81.9
Nitab4.5_0000645g0090 Nicotiana tabacum HOM05D004970 ORTHO05D005665 1.2e-52 210.3 138 79.0
CSS0006334 Camellia sinensis var. sinensis HOM05D004970 ORTHO05D005665 1.6e-52 209.9 138 79.0
Nn1g09277 Nelumbo nucifera HOM05D004970 ORTHO05D005665 2.1e-52 209.5 128 79.7
Peaxi162Scf00516g00423 Petunia axillaris HOM05D004970 ORTHO05D005665 2.1e-52 209.5 138 78.3
CAN.G732.31 Capsicum annuum HOM05D004970 ORTHO05D005665 2.8e-52 209.1 138 77.5
Solyc03g097320.3 Solanum lycopersicum HOM05D004970 ORTHO05D005665 4.7e-52 208.4 138 78.3
Sopen03g028090 Solanum pennellii HOM05D004970 ORTHO05D005665 4.7e-52 208.4 138 78.3
Nitab4.5_0002998g0010 Nicotiana tabacum HOM05D004970 ORTHO05D005665 1.0e-51 207.2 138 78.3
Nitab4.5_0005545g0050 Nicotiana tabacum HOM05D004970 ORTHO05D005665 1.0e-51 207.2 138 76.8
Nitab4.5_0000021g0930 Nicotiana tabacum HOM05D004970 ORTHO05D005665 1.4e-51 206.8 138 76.8
Oeu028991.1 Olea europaea HOM05D004970 ORTHO05D005665 1.4e-51 206.8 135 78.5
Sopen06g029080 Solanum pennellii HOM05D004970 ORTHO05D005665 1.4e-51 206.8 138 77.5
PGSC0003DMG400027038 Solanum tuberosum HOM05D004970 ORTHO05D005665 1.8e-51 206.5 138 76.8
GSVIVG01024261001 Vitis vinifera HOM05D004970 ORTHO05D005665 3.1e-51 205.7 138 78.3
Ciclev10031289m.g Citrus clementina HOM05D004970 ORTHO05D005665 5.2e-51 204.9 138 76.1
Sc13g0011030 Simmondsia chinensis HOM05D004970 ORTHO05D005665 5.2e-51 204.9 128 78.1
MSTRG.8566 Avicennia marina HOM05D004970 ORTHO05D005665 6.8e-51 204.5 134 76.9
Cc02_g00040 Coffea canephora HOM05D004970 ORTHO05D005665 6.8e-51 204.5 134 77.6
Solyc06g072710.3 Solanum lycopersicum HOM05D004970 ORTHO05D005665 6.8e-51 204.5 138 76.8
MSTRG.26919 Avicennia marina HOM05D004970 ORTHO05D005665 8.9e-51 204.1 138 76.1
Cfa016111 Carpinus fangiana HOM05D004970 ORTHO05D005665 8.9e-51 204.1 138 76.8
MBI04_g30791_MAGBIO Magnolia biondii HOM05D004970 ORTHO05D005665 8.9e-51 204.1 128 80.5
Aqoxy3G01903 Aquilegia oxysepala HOM05D004970 ORTHO05D005665 1.5e-50 203.4 152 68.4
BcaB05g23594 Brassica carinata HOM05D004970 ORTHO05D005665 1.5e-50 203.4 138 74.6
Thhalv10002486m.g Eutrema salsugineum HOM05D004970 ORTHO05D005665 1.5e-50 203.4 138 74.6
Potri.013G075400 Populus trichocarpa HOM05D004970 ORTHO05D005665 1.5e-50 203.4 138 76.1
Migut.H00003 Erythranthe guttata HOM05D004970 ORTHO05D005665 2.0e-50 203.0 138 75.4
Gohir.D11G234800 Gossypium hirsutum HOM05D004970 ORTHO05D005665 2.0e-50 203.0 138 74.6
Gorai.007G247500 Gossypium raimondii HOM05D004970 ORTHO05D005665 2.0e-50 203.0 138 74.6
Lj3C883T3 Lonicera japonica HOM05D004970 ORTHO05D005665 2.0e-50 203.0 128 78.9
Peaxi162Scf00815g00348 Petunia axillaris HOM05D004970 ORTHO05D005665 2.0e-50 203.0 138 76.8
PGSC0003DMG400026491 Solanum tuberosum HOM05D004970 ORTHO05D005665 2.0e-50 203.0 124 81.5
Gohir.A11G221400 Gossypium hirsutum HOM05D004970 ORTHO05D005665 2.6e-50 202.6 138 74.6
Lj3g0014992 Lotus japonicus HOM05D004970 ORTHO05D005665 3.4e-50 202.2 138 76.1
PSO782G0173 Papaver somniferum HOM05D004970 ORTHO05D005665 3.4e-50 202.2 128 78.1
Haze_00346 Corylus avellana HOM05D004970 ORTHO05D005665 4.4e-50 201.8 138 75.4
Duzib177G0786 Durio zibethinus HOM05D004970 ORTHO05D005665 4.4e-50 201.8 128 78.1
Manes.08G159000 Manihot esculenta HOM05D004970 ORTHO05D005665 4.4e-50 201.8 128 78.9
Manes.09G130800 Manihot esculenta HOM05D004970 ORTHO05D005665 5.8e-50 201.4 128 79.7
Potri.019G043300 Populus trichocarpa HOM05D004970 ORTHO05D005665 5.8e-50 201.4 138 75.4
Sp5g19000 Schrenkiella parvula HOM05D004970 ORTHO05D005665 5.8e-50 201.4 138 73.9
Thecc.05G227300 Theobroma cacao HOM05D004970 ORTHO05D005665 5.8e-50 201.4 138 74.6
TWI32G0575 Tripterygium wilfordii HOM05D004970 ORTHO05D005665 5.8e-50 201.4 128 78.1
A02p24000 Brassica napus HOM05D004970 ORTHO05D005665 7.5e-50 201.1 138 73.9
BraA02t07395Z Brassica rapa HOM05D004970 ORTHO05D005665 7.5e-50 201.1 138 73.9
CiPaw.06G037800 Carya illinoinensis HOM05D004970 ORTHO05D005665 9.8e-50 200.7 128 79.7
TWI60G0079 Tripterygium wilfordii HOM05D004970 ORTHO05D005665 1.3e-49 200.3 128 78.1
C02p37850 Brassica napus HOM05D004970 ORTHO05D005665 1.7e-49 199.9 138 73.2
BolC2t09801H Brassica oleracea HOM05D004970 ORTHO05D005665 1.7e-49 199.9 138 73.2
BcaC03g16031 Brassica carinata HOM05D004970 ORTHO05D005665 2.2e-49 199.5 138 73.2
Atru.chr12.1813 Acer truncatum HOM05D004970 ORTHO05D005665 2.9e-49 199.1 138 74.6
Actinidia24515 Actinidia chinensis HOM05D004970 ORTHO05D005665 2.9e-49 199.1 125 82.4
Ah.10g025760 Amaranthus hybridus HOM05D004970 ORTHO05D005665 2.9e-49 199.1 128 76.6
Sabra19G0054000 Salix brachista HOM05D004970 ORTHO05D005665 2.9e-49 199.1 138 75.4
CARHR056270 Cardamine hirsuta HOM05D004970 ORTHO05D005665 3.7e-49 198.7 128 76.6
CiPaw.05G210700 Carya illinoinensis HOM05D004970 ORTHO05D005665 3.7e-49 198.7 128 77.3
DCAR_020435 Daucus carota HOM05D004970 ORTHO05D005665 1.9e-48 196.4 134 75.4
ATR0568G198 Amborella trichopoda HOM05D004970 ORTHO05D005665 2.4e-48 196.1 128 76.6
Carub.0002s0979 Capsella rubella HOM05D004970 ORTHO05D005665 3.2e-48 195.7 138 72.5
COL.COLO4_08410 Corchorus olitorius HOM05D004970 ORTHO05D005665 3.2e-48 195.7 138 72.5
Sabra13G0064900 Salix brachista HOM05D004970 ORTHO05D005665 3.2e-48 195.7 162 66.0
Duzib128G2026 Durio zibethinus HOM05D004970 ORTHO05D005665 4.1e-48 195.3 138 73.2
PSO063G5802 Papaver somniferum HOM05D004970 ORTHO05D005665 4.1e-48 195.3 128 76.6
Glyma.12G013300 Glycine max HOM05D004970 ORTHO05D005665 5.4e-48 194.9 138 73.2
AL2G19270 Arabidopsis lyrata HOM05D004970 ORTHO05D005665 7.0e-48 194.5 138 71.7
Lalb_Chr01g0000711 Lupinus albus HOM05D004970 ORTHO05D005665 7.0e-48 194.5 126 77.0
CAN.G65.124 Capsicum annuum HOM05D004970 ORTHO05D005665 9.2e-48 194.1 138 74.6
CANSAT21G0704 Cannabis sativa HOM05D004970 ORTHO05D005665 2.0e-47 193.0 128 75.8
MD07G1311500 Malus domestica HOM05D004970 ORTHO05D005665 2.0e-47 193.0 128 76.6
Prupe.2G329700 Prunus persica HOM05D004970 ORTHO05D005665 2.0e-47 193.0 128 75.0
THA.LOC104821684 Tarenaya hassleriana HOM05D004970 ORTHO05D005665 2.0e-47 193.0 128 74.2
AT1G64860 Arabidopsis thaliana HOM05D004970 ORTHO05D005665 2.7e-47 192.6 138 71.7
SalBow1G3212 Salvia bowleyana HOM05D004970 ORTHO05D005665 2.7e-47 192.6 123 77.2
FvH4_7g34280 Fragaria vesca HOM05D004970 ORTHO05D005665 4.6e-47 191.8 128 76.6
FAN01G0343 Fragaria x ananassa HOM05D004970 ORTHO05D005665 4.6e-47 191.8 128 76.6
FAN03G2928 Fragaria x ananassa HOM05D004970 ORTHO05D005665 4.6e-47 191.8 128 76.6
FAN10G0750 Fragaria x ananassa HOM05D004970 ORTHO05D005665 6.0e-47 191.4 128 76.6
TAR375G0320 Trochodendron aralioides HOM05D004970 ORTHO05D005665 1.3e-46 190.3 164 64.0
RcHm_v2.0_Chr1g0384631 Rosa chinensis HOM05D004970 ORTHO05D005665 1.7e-46 189.9 128 75.8
Sed0000344 Sechium edule HOM05D004970 ORTHO05D005665 1.7e-46 189.9 128 73.4
Ca_00814_v3 Cicer arietinum L. HOM05D004970 ORTHO05D005665 3.0e-46 189.1 138 70.3
MELO3C024760.2 Cucumis melo HOM05D004970 ORTHO05D005665 3.0e-46 189.1 128 74.2
Glyma.09G223600 Glycine max HOM05D004970 ORTHO05D005665 3.0e-46 189.1 138 72.5
Psat7g161560 Pisum sativum HOM05D004970 ORTHO05D005665 3.9e-46 188.7 128 74.2
VMungo1127G0435 Vigna mungo HOM05D004970 ORTHO05D005665 3.9e-46 188.7 138 71.7
Phvul.011G016400 Phaseolus vulgaris HOM05D004970 ORTHO05D005665 5.0e-46 188.3 138 71.0
ClCG02G007910 Citrullus lanatus HOM05D004970 ORTHO05D005665 6.6e-46 188.0 128 73.4
HanXRQChr05g0144361 Helianthus annuus HOM05D004970 ORTHO05D005665 8.6e-46 187.6 128 74.2
CsaV3_2G035830 Cucumis sativus L. HOM05D004970 ORTHO05D005665 1.1e-45 187.2 128 73.4
Aa31LG2G2110 Aethionema arabicum HOM05D004970 ORTHO05D005665 1.9e-45 186.4 135 70.4
Sed0007466 Sechium edule HOM05D004970 ORTHO05D005665 1.9e-45 186.4 128 72.7
arahy.Tifrunner.gnm1.ann1.N044W1 Arachis hypogaea HOM05D004970 ORTHO05D005665 2.5e-45 186.0 138 71.7
arahy.Tifrunner.gnm1.ann1.TJCL76 Arachis hypogaea HOM05D004970 ORTHO05D005665 2.5e-45 186.0 138 71.7
AUR62024839 Chenopodium quinoa HOM05D004970 ORTHO05D005665 2.5e-45 186.0 128 71.1
HanXRQChr08g0223061 Helianthus annuus HOM05D004970 ORTHO05D005665 3.3e-45 185.7 128 74.2
Ca_13824_v3 Cicer arietinum L. HOM05D004970 ORTHO05D005665 4.3e-45 185.3 128 71.1
Lalb_Chr19g0140121 Lupinus albus HOM05D004970 ORTHO05D005665 4.3e-45 185.3 126 74.6
MD01G1240100 Malus domestica HOM05D004970 ORTHO05D005665 4.3e-45 185.3 128 73.4
Medtr0172s0030 Medicago truncatula HOM05D004970 ORTHO05D005665 4.3e-45 185.3 138 71.0
ECA233G0740 Erigeron canadensis HOM05D004970 ORTHO05D005665 5.6e-45 184.9 130 73.1
AUR62032380 Chenopodium quinoa HOM05D004970 ORTHO05D005665 7.3e-45 184.5 128 70.3
Lsat_1_v5_gn_8_14040 Lactuca sativa HOM05D004970 ORTHO05D005665 9.5e-45 184.1 128 73.4
CDE01G0673 Ceratophyllum demersum HOM05D004970 ORTHO05D005665 1.6e-44 183.3 128 70.3
Gohir.D08G239800 Gossypium hirsutum HOM05D004970 ORTHO05D005665 4.7e-44 181.8 138 71.7
Gorai.004G255000 Gossypium raimondii HOM05D004970 ORTHO05D005665 4.7e-44 181.8 138 71.7
TPR.G20254 Trifolium pratense HOM05D004970 ORTHO05D005665 6.2e-44 181.4 124 72.6
Lsat_1_v5_gn_2_127081 Lactuca sativa HOM05D004970 ORTHO05D005665 8.1e-44 181.0 128 73.4
CDE12G0545 Ceratophyllum demersum HOM05D004970 ORTHO05D005665 2.3e-43 179.5 150 62.7
Gohir.A08G221630 Gossypium hirsutum HOM05D004970 ORTHO05D005665 3.1e-43 179.1 138 71.0
Peaxi162Scf00815g00359 Petunia axillaris HOM05D004970 ORTHO05D009229 1.5e-42 176.8 124 73.4
ECA238G3380 Erigeron canadensis HOM05D004970 ORTHO05D005665 7.5e-42 174.5 128 71.1
HanXRQChr14g0461121 Helianthus annuus HOM05D004970 ORTHO05D005665 6.4e-41 171.4 125 70.4
Os08g0163400 Oryza sativa ssp. japonica HOM05D004970 ORTHO05D005665 8.3e-41 171.0 128 62.5
unitig_0.g2401 Utricularia gibba HOM05D002300 ORTHO05D002340 1.1e-40 170.6 118 71.2
HanXRQChr15g0485731 Helianthus annuus HOM05D004970 ORTHO05D005665 7.1e-40 167.9 125 69.6
SGA_v2.0_scaffold18G08209 Striga asiatica HOM05D004970 ORTHO05D005665 2.1e-39 166.4 138 65.9
vmacro06358 Vaccinium macrocarpon HOM05D004970 ORTHO05D005665 2.1e-39 166.4 135 65.9
ECA232G1337 Erigeron canadensis HOM05D004970 ORTHO05D005665 7.8e-39 164.5 128 67.2
Zm00001eb415360 Zea mays HOM05D004970 ORTHO05D005665 2.3e-38 162.9 152 54.6
CDE11G0972 Ceratophyllum demersum HOM05D004970 ORTHO05D005665 3.9e-38 162.2 128 66.4
Zm00001eb172090 Zea mays HOM05D004970 ORTHO05D005665 3.9e-38 162.2 152 53.3
Nn3g19169 Nelumbo nucifera HOM05D004970 ORTHO05D005665 1.5e-37 160.2 108 74.1
Lsat_1_v5_gn_9_50600 Lactuca sativa HOM05D004970 ORTHO05D005665 4.7e-36 155.2 128 67.2
Eucgr.A02994 Eucalyptus grandis HOM05D004970 ORTHO05D005665 2.0e-34 149.8 102 73.5
unitig_52.g17686 Utricularia gibba HOM05D004970 ORTHO05D005665 1.3e-33 147.1 176 47.2
Cpa.g.sc3807.1 Carica papaya HOM05D004970 ORTHO05D005665 2.9e-33 146.0 101 72.3
EL10Ac2g02539 Beta vulgaris HOM05D004970 ORTHO05D005665 2.4e-32 142.9 128 59.4
Cpa.g.sc43.154 Carica papaya HOM05D004970 ORTHO05D005665 2.6e-26 122.9 75 78.7
HPP92_022744 Vanilla planifolia HOM05D004970 ORTHO05D005665 4.4e-26 122.1 124 50.8
SEGI_26324 Sequoiadendron giganteum HOM05D004970 ORTHO05D005665 6.6e-22 108.2 126 48.4
SEGI_32403 Sequoiadendron giganteum HOM05D004970 ORTHO05D005665 6.6e-22 108.2 126 48.4
CSS0044357 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D011772 4.0e-19 99.0 45 97.8
Rhsim03G0225500 Rhododendron simsii HOM05D004970 ORTHO05D005665 9.9e-18 94.4 134 43.3
CSS0029772 Camellia sinensis var. sinensis HOM05D004970 ORTHO05D005665 1.2e-15 87.4 58 74.1
SEGI_09576 Sequoiadendron giganteum HOM05D004970 ORTHO05D005665 1.3e-14 84.0 145 33.8
CDE02G0902 Ceratophyllum demersum HOM05D004970 ORTHO05D005665 8.7e-14 81.3 65 66.2
Pp3c14_4440 Physcomitrium patens HOM05D001257 ORTHO05D005665 1.1e-13 80.9 128 39.1
HPP92_022731 Vanilla planifolia HOM05D004970 ORTHO05D005665 2.4e-11 73.2 49 63.3
Mapoly0009s0187 Marchantia polymorpha HOM05D001257 ORTHO05D005665 6.9e-11 71.6 121 39.7
MBI12_g00582_MAGBIO Magnolia biondii HOM05D004970 ORTHO05D000032 1.7e-09 67.0 57 59.6
Aqoxy2G00149 Aquilegia oxysepala HOM05D001257 ORTHO05D009836 1.3e-06 57.4 64 48.4
Hma1.2p1_0685F.1_g203110 Hydrangea macrophylla HOM05D001257 ORTHO05D009836 1.3e-06 57.4 76 44.7
SMO347G0224 Selaginella moellendorffii HOM05D001257 ORTHO05D005665 3.0e-06 56.2 103 32.0
CDE08G0968 Ceratophyllum demersum HOM05D001257 ORTHO05D009836 8.7e-06 54.7 73 43.8


User provided reference genes

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