Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016618 Camellia sinensis var. sinensis HOM05D002762 ORTHO05D004643 3.4e-117 425.2 253 100.0
CSS0041788 Camellia sinensis var. sinensis HOM05D002762 ORTHO05D004643 1.3e-63 247.3 243 68.3
CSS0044156 Camellia sinensis var. sinensis HOM05D002762 ORTHO05D004643 1.3e-63 247.3 243 68.3
Dinv38356 Davidia involucrata HOM05D002762 ORTHO05D008831 4.1e-62 242.3 245 65.3
vmacro08247 Vaccinium macrocarpon HOM05D002762 ORTHO05D004643 1.7e-55 220.3 248 62.9
GSVIVG01017859001 Vitis vinifera HOM05D002762 ORTHO05D004643 6.3e-55 218.4 243 60.5
Atru.chr4.2693 Acer truncatum HOM05D002762 ORTHO05D004643 8.3e-55 218.0 243 60.5
Actinidia40216 Actinidia chinensis HOM05D002762 ORTHO05D004643 8.3e-55 218.0 243 63.0
Actinidia23462 Actinidia chinensis HOM05D002762 ORTHO05D004643 1.8e-54 216.9 243 66.7
Ciclev10004705m.g Citrus clementina HOM05D002762 ORTHO05D004643 1.6e-53 213.8 241 60.6
Dinv44461 Davidia involucrata HOM05D002762 ORTHO05D004643 1.6e-53 213.8 244 61.5
Lsat_1_v5_gn_5_47620 Lactuca sativa HOM05D002762 ORTHO05D004643 4.5e-53 212.2 245 59.6
ECA240G4644 Erigeron canadensis HOM05D002762 ORTHO05D004643 1.0e-52 211.1 243 59.3
Hma1.2p1_2025F.1_g311500 Hydrangea macrophylla HOM05D002762 ORTHO05D004643 1.0e-52 211.1 247 58.7
Ca_00594_v3 Cicer arietinum L. HOM05D002762 ORTHO05D004643 6.5e-52 208.4 240 57.5
CAN.G1247.4 Capsicum annuum HOM05D002762 ORTHO05D004643 9.5e-51 204.5 245 59.6
Nitab4.5_0002594g0070 Nicotiana tabacum HOM05D002762 ORTHO05D004643 1.6e-50 203.8 245 57.6
Peaxi162Scf00769g00116 Petunia axillaris HOM05D002762 ORTHO05D004643 2.1e-50 203.4 245 58.8
HanXRQChr03g0079911 Helianthus annuus HOM05D002762 ORTHO05D004643 2.8e-50 203.0 243 57.6
Phvul.006G157700 Phaseolus vulgaris HOM05D002762 ORTHO05D004643 3.6e-50 202.6 235 58.7
Psat1g185320 Pisum sativum HOM05D002762 ORTHO05D004643 4.7e-50 202.2 240 57.9
Nitab4.5_0002295g0030 Nicotiana tabacum HOM05D002762 ORTHO05D004643 6.1e-50 201.8 243 58.8
Sopen06g019510 Solanum pennellii HOM05D002762 ORTHO05D004643 6.1e-50 201.8 245 58.8
PGSC0003DMG400030790 Solanum tuberosum HOM05D002762 ORTHO05D004643 1.8e-49 200.3 244 59.0
Solyc06g054440.2 Solanum lycopersicum HOM05D002762 ORTHO05D004643 2.3e-49 199.9 245 58.4
Nn4g26135 Nelumbo nucifera HOM05D002762 ORTHO05D004643 3.0e-49 199.5 243 56.4
MSTRG.3976 Avicennia marina HOM05D002762 ORTHO05D004643 1.5e-48 197.2 220 61.8
Lj3C805G9 Lonicera japonica HOM05D002762 ORTHO05D004643 2.6e-48 196.4 235 60.0
Lalb_Chr20g0118281 Lupinus albus HOM05D002762 ORTHO05D004643 2.6e-48 196.4 226 59.3
VMungo0540G1770 Vigna mungo HOM05D002762 ORTHO05D004643 2.6e-48 196.4 235 57.4
TPR.G18042 Trifolium pratense HOM05D002762 ORTHO05D004643 3.4e-48 196.1 238 56.7
Prupe.1G147900 Prunus persica HOM05D002762 ORTHO05D004643 4.4e-48 195.7 236 56.4
Glyma.17G019800 Glycine max HOM05D002762 ORTHO05D004643 5.7e-48 195.3 196 65.3
DCAR_030582 Daucus carota HOM05D002762 ORTHO05D004643 9.8e-48 194.5 240 56.7
CANSAT78G1359 Cannabis sativa HOM05D002762 ORTHO05D004643 2.8e-47 193.0 243 56.0
HanXRQChr08g0226481 Helianthus annuus HOM05D002762 ORTHO05D004643 2.8e-47 193.0 193 65.3
Phvul.003G097600 Phaseolus vulgaris HOM05D002762 ORTHO05D004643 4.9e-47 192.2 232 56.9
SalBow2G0360 Salvia bowleyana HOM05D002762 ORTHO05D004643 8.3e-47 191.4 226 61.1
SalBow2G3267 Salvia bowleyana HOM05D002762 ORTHO05D004643 8.3e-47 191.4 226 61.1
TAR362G1268 Trochodendron aralioides HOM05D002762 ORTHO05D004643 8.3e-47 191.4 199 52.8
FAN17G2967 Fragaria x ananassa HOM05D002762 ORTHO05D004643 1.1e-46 191.0 195 63.1
FAN22G0648 Fragaria x ananassa HOM05D002762 ORTHO05D004643 1.4e-46 190.7 195 62.6
Medtr2g021030 Medicago truncatula HOM05D002762 ORTHO05D004643 1.4e-46 190.7 239 54.8
Thecc.04G271300 Theobroma cacao HOM05D002762 ORTHO05D004643 3.1e-46 189.5 243 55.6
arahy.Tifrunner.gnm1.ann1.L75CTN Arachis hypogaea HOM05D002762 ORTHO05D004643 5.9e-45 185.3 231 55.8
MD16G1180300 Malus domestica HOM05D002762 ORTHO05D004643 5.9e-45 185.3 233 54.5
Cc03_g02820 Coffea canephora HOM05D002762 ORTHO05D004643 1.0e-44 184.5 243 56.8
Rhsim04G0212100 Rhododendron simsii HOM05D002762 ORTHO05D004643 1.7e-44 183.7 249 56.6
FvH4_4g14060 Fragaria vesca HOM05D002762 ORTHO05D004643 2.9e-44 183.0 193 62.2
Sed0001779 Sechium edule HOM05D002762 ORTHO05D004643 3.8e-44 182.6 226 55.3
Aa31LG9G1950 Aethionema arabicum HOM05D002762 ORTHO05D004643 5.0e-44 182.2 192 59.9
FAN12G3553 Fragaria x ananassa HOM05D002762 ORTHO05D004643 5.0e-44 182.2 193 61.1
HanXRQChr11g0325871 Helianthus annuus HOM05D002762 ORTHO05D004643 5.0e-44 182.2 238 59.2
VMungo1215G0792 Vigna mungo HOM05D002762 ORTHO05D004643 5.0e-44 182.2 195 63.1
arahy.Tifrunner.gnm1.ann1.EJ0XN1 Arachis hypogaea HOM05D002762 ORTHO05D004643 6.6e-44 181.8 224 55.8
ClCG06G005660 Citrullus lanatus HOM05D002762 ORTHO05D004643 8.6e-44 181.4 226 55.8
Lj6g0020038 Lotus japonicus HOM05D002762 ORTHO05D004643 8.6e-44 181.4 238 57.1
Duzib052G0700 Durio zibethinus HOM05D002762 ORTHO05D004643 1.5e-43 180.6 243 54.7
Manes.03G187500 Manihot esculenta HOM05D002762 ORTHO05D004643 2.5e-43 179.9 202 53.5
RcHm_v2.0_Chr4g0419291 Rosa chinensis HOM05D002762 ORTHO05D004643 3.3e-43 179.5 193 60.1
arahy.Tifrunner.gnm1.ann1.Q6K1JG Arachis hypogaea HOM05D002762 ORTHO05D004643 4.3e-43 179.1 243 55.1
arahy.Tifrunner.gnm1.ann1.6S26PP Arachis hypogaea HOM05D002762 ORTHO05D004643 5.6e-43 178.7 243 55.1
MELO3C021388.2 Cucumis melo HOM05D002762 ORTHO05D004643 5.6e-43 178.7 227 54.2
Duzib151G0782 Durio zibethinus HOM05D002762 ORTHO05D004643 5.6e-43 178.7 245 53.5
Glyma.13G211600 Glycine max HOM05D002762 ORTHO05D004643 1.6e-42 177.2 240 54.6
BcaC06g32936 Brassica carinata HOM05D002762 ORTHO05D004643 2.1e-42 176.8 193 50.3
CsaV3_6G005490 Cucumis sativus L. HOM05D002762 ORTHO05D004643 4.7e-42 175.6 192 66.7
A03p49130 Brassica napus HOM05D002762 ORTHO05D004643 8.0e-42 174.9 194 49.5
C07p47170 Brassica napus HOM05D002762 ORTHO05D004643 8.0e-42 174.9 194 49.5
BolC7t45238H Brassica oleracea HOM05D002762 ORTHO05D004643 8.0e-42 174.9 194 49.5
BraA03t14008Z Brassica rapa HOM05D002762 ORTHO05D004643 8.0e-42 174.9 194 49.5
Eucgr.B01185 Eucalyptus grandis HOM05D002762 ORTHO05D004643 1.0e-41 174.5 147 58.5
Glyma.07G254400 Glycine max HOM05D002762 ORTHO05D004643 2.3e-41 173.3 196 60.7
CDE05G1517 Ceratophyllum demersum HOM05D002762 ORTHO05D004643 4.0e-41 172.6 152 57.2
THA.LOC104802549 Tarenaya hassleriana HOM05D002762 ORTHO05D004643 3.4e-40 169.5 192 64.1
Thhalv10024700m.g Eutrema salsugineum HOM05D002762 ORTHO05D004643 4.4e-40 169.1 244 55.3
COL.COLO4_13978 Corchorus olitorius HOM05D002762 ORTHO05D004643 7.5e-40 168.3 243 51.9
MD13G1179300 Malus domestica HOM05D002762 ORTHO05D004643 9.8e-40 167.9 238 51.3
BcaC06g33410 Brassica carinata HOM05D002762 ORTHO05D004643 2.9e-39 166.4 151 57.0
AT4G15475 Arabidopsis thaliana HOM05D002762 ORTHO05D004643 3.7e-39 166.0 194 63.4
MBI19_g20289_MAGBIO Magnolia biondii HOM05D002762 ORTHO05D004643 3.7e-39 166.0 134 79.1
TWI73G1094 Tripterygium wilfordii HOM05D002762 ORTHO05D004643 1.1e-38 164.5 247 51.8
Glyma.15G101100 Glycine max HOM05D002762 ORTHO05D004643 3.2e-38 162.9 136 75.0
Haze_01003 Corylus avellana HOM05D002762 ORTHO05D004643 7.0e-38 161.8 187 49.2
Cfa015545 Carpinus fangiana HOM05D002762 ORTHO05D004643 9.2e-38 161.4 187 49.2
AL7G40070 Arabidopsis lyrata HOM05D002762 ORTHO05D004643 1.6e-37 160.6 145 58.6
TWI09G0048 Tripterygium wilfordii HOM05D002762 ORTHO05D004643 1.6e-37 160.6 151 68.2
Sc19g0004700 Simmondsia chinensis HOM05D002762 ORTHO05D004643 2.0e-37 160.2 192 58.9
Carub.0007s2643 Capsella rubella HOM05D002762 ORTHO05D004643 1.0e-36 157.9 192 49.0
PGR031G1661 Punica granatum HOM05D002762 ORTHO05D004643 1.3e-36 157.5 152 53.9
QL06p006068 Quercus lobata HOM05D002762 ORTHO05D004643 2.3e-36 156.8 244 48.8
CARHR222240 Cardamine hirsuta HOM05D002762 ORTHO05D004643 1.1e-35 154.5 143 55.9
CiPaw.01G157300 Carya illinoinensis HOM05D002762 ORTHO05D004643 1.1e-35 154.5 193 47.7
Gohir.A09G231600 Gossypium hirsutum HOM05D002762 ORTHO05D004643 2.5e-35 153.3 238 49.6
Gohir.D09G232700 Gossypium hirsutum HOM05D002762 ORTHO05D004643 2.5e-35 153.3 238 49.6
Gorai.006G255600 Gossypium raimondii HOM05D002762 ORTHO05D004643 2.5e-35 153.3 238 49.6
ATR0626G340 Amborella trichopoda HOM05D002762 ORTHO05D004643 5.6e-35 152.1 199 46.7
Sp7g13700 Schrenkiella parvula HOM05D002762 ORTHO05D004643 5.6e-35 152.1 192 46.4
Lalb_Chr18g0055921 Lupinus albus HOM05D002762 ORTHO05D004643 2.8e-34 149.8 194 45.9
SEGI_13295 Sequoiadendron giganteum HOM05D002762 ORTHO05D004643 4.7e-34 149.1 195 53.3
Migut.G00246 Erythranthe guttata HOM05D002762 ORTHO05D004643 1.1e-33 147.9 192 59.9
SGA_v2.0_scaffold237G43847 Striga asiatica HOM05D002762 ORTHO05D004643 1.4e-33 147.5 152 52.6
Hma1.2p1_0511F.1_g169210 Hydrangea macrophylla HOM05D002762 ORTHO05D004643 2.0e-29 133.7 196 46.4
SMO228G0132 Selaginella moellendorffii HOM05D002762 ORTHO05D004643 2.7e-29 133.3 152 43.4
Migut.G00244 Erythranthe guttata HOM05D002762 ORTHO05D004643 1.7e-28 130.6 192 52.1
Oeu042638.1 Olea europaea HOM05D002762 ORTHO05D004643 3.9e-28 129.4 151 46.4
AagrBONN_evm.TU.Sc2ySwM_117.2600 Anthoceros agrestis HOM05D002762 ORTHO05D004643 6.4e-23 112.1 184 38.0
Oeu017376.1 Olea europaea HOM05D002762 ORTHO05D004643 7.1e-22 108.6 94 56.4
PSO170G0016 Papaver somniferum HOM05D002762 ORTHO05D004643 3.3e-19 99.8 68 66.2
PSO302G0133 Papaver somniferum HOM05D002762 ORTHO05D004643 3.3e-19 99.8 68 66.2
Os11g0641200 Oryza sativa ssp. japonica HOM05D002762 ORTHO05D004643 7.3e-19 98.6 227 30.8
Zm00001eb115300 Zea mays HOM05D002762 ORTHO05D004643 1.4e-17 94.4 237 38.0
HPP92_016898 Vanilla planifolia HOM05D000144 ORTHO05D004643 8.9e-17 91.7 185 44.3
Aqoxy2G03201 Aquilegia oxysepala HOM05D002762 ORTHO05D004643 4.1e-14 82.8 110 62.7
Pp3c20_15890 Physcomitrium patens HOM05D011912 ORTHO05D014147 4.3e-11 72.8 73 42.5
Pp3c6_5960 Physcomitrium patens HOM05D002762 ORTHO05D004643 1.1e-09 68.2 151 29.1
Nn2g11037 Nelumbo nucifera HOM05D002125 ORTHO05D002105 1.4e-09 67.8 137 32.1
CsaV3_3G033360 Cucumis sativus L. HOM05D002125 ORTHO05D002105 9.0e-09 65.1 177 28.2
Cpa.g.c40554 Carica papaya HOM05D002762 ORTHO05D004643 1.5e-08 64.3 81 48.1
Dinv36515 Davidia involucrata HOM05D001818 ORTHO05D001780 2.6e-08 63.5 148 29.7
CSS0047715 Camellia sinensis var. sinensis HOM05D002125 ORTHO05D002105 4.4e-08 62.8 191 29.8
Pp3c6_11940 Physcomitrium patens HOM05D002762 ORTHO05D004643 5.8e-08 62.4 216 25.0
PGR004G0027 Punica granatum HOM05D002125 ORTHO05D002105 5.8e-08 62.4 132 31.1
MBI15_g03640_MAGBIO Magnolia biondii HOM05D002125 ORTHO05D002105 2.2e-07 60.5 176 29.5
PSO017G2695 Papaver somniferum HOM05D002125 ORTHO05D002105 2.2e-07 60.5 147 27.2
CARHR115980 Cardamine hirsuta HOM05D001818 ORTHO05D001780 3.8e-07 59.7 111 33.3
PSO349G0138 Papaver somniferum HOM05D002125 ORTHO05D002105 3.8e-07 59.7 152 26.3
Rhsim12G0089400 Rhododendron simsii HOM05D006667 ORTHO05D008387 3.8e-07 59.7 77 36.4
unitig_899.g15094 Utricularia gibba HOM05D004324 ORTHO05D004840 3.8e-07 59.7 174 28.7
EL10Ac7g16789 Beta vulgaris HOM05D002125 ORTHO05D002105 6.4e-07 58.9 137 30.7
EL10As8g23828 Beta vulgaris HOM05D002125 ORTHO05D002105 6.4e-07 58.9 137 30.7
Dinv41502 Davidia involucrata HOM05D001818 ORTHO05D001780 6.4e-07 58.9 148 29.1
Sp4g04780 Schrenkiella parvula HOM05D001818 ORTHO05D001780 6.4e-07 58.9 174 29.3
Gohir.D05G057000 Gossypium hirsutum HOM05D001818 ORTHO05D001780 1.1e-06 58.2 89 37.1
Hund24823 Selenicereus undatus HOM05D007176 ORTHO05D009050 1.1e-06 58.2 138 33.3
HanXRQChr08g0231281 Helianthus annuus HOM05D005998 ORTHO05D007664 1.4e-06 57.8 76 38.2
MBI01_g44281_MAGBIO Magnolia biondii HOM05D007176 ORTHO05D009050 1.4e-06 57.8 128 33.6
Prupe.1G349400 Prunus persica HOM05D006667 ORTHO05D008387 1.4e-06 57.8 77 36.4
Solyc12g009560.2 Solanum lycopersicum HOM05D001818 ORTHO05D001780 1.4e-06 57.8 92 33.7
Ah.08g209960 Amaranthus hybridus HOM05D002125 ORTHO05D002105 1.9e-06 57.4 137 29.2
Cpa.g.sc46.170 Carica papaya HOM05D003333 ORTHO05D003836 1.9e-06 57.4 159 29.6
Rhsim01G0030200 Rhododendron simsii HOM05D001219 ORTHO05D001017 1.9e-06 57.4 120 27.5
Rhsim01G0030300 Rhododendron simsii HOM05D001219 ORTHO05D001017 1.9e-06 57.4 120 27.5
Sopen12g004540 Solanum pennellii HOM05D001818 ORTHO05D001780 2.4e-06 57.0 92 33.7
ECA236G1847 Erigeron canadensis HOM05D005998 ORTHO05D007664 3.2e-06 56.6 159 25.8
PGSC0003DMG400002914 Solanum tuberosum HOM05D001818 ORTHO05D001780 3.2e-06 56.6 92 33.7
Carub.0004s0519 Capsella rubella HOM05D001818 ORTHO05D001780 4.2e-06 56.2 111 33.3
MBI15_g19960_MAGBIO Magnolia biondii HOM05D002125 ORTHO05D002105 4.2e-06 56.2 117 29.9
Peaxi162Scf00744g00225 Petunia axillaris HOM05D002125 ORTHO05D002105 4.2e-06 56.2 132 28.8
TAR623G1068 Trochodendron aralioides HOM05D002125 ORTHO05D002105 4.2e-06 56.2 171 25.7
Gorai.010G114900 Gossypium raimondii HOM05D001818 ORTHO05D001780 5.4e-06 55.8 89 34.8
HanXRQChr08g0231291 Helianthus annuus HOM05D005998 ORTHO05D007664 5.4e-06 55.8 76 38.2
HanXRQChr08g0231301 Helianthus annuus HOM05D005998 ORTHO05D007664 5.4e-06 55.8 76 38.2
Duzib150G1574 Durio zibethinus HOM05D001818 ORTHO05D001780 7.1e-06 55.5 89 36.0
Gohir.D06G100000 Gossypium hirsutum HOM05D001818 ORTHO05D001780 7.1e-06 55.5 89 34.8
TAR622G0133 Trochodendron aralioides HOM05D006667 ORTHO05D008387 7.1e-06 55.5 88 34.1
BcaC02g08348 Brassica carinata HOM05D001818 ORTHO05D001780 9.3e-06 55.1 120 30.8
BolC4t27072H Brassica oleracea HOM05D001818 ORTHO05D001780 9.3e-06 55.1 120 30.8
Carub.0001s4411 Capsella rubella HOM05D002887 ORTHO05D003159 9.3e-06 55.1 156 29.5
FAN02G4625 Fragaria x ananassa HOM05D002813 ORTHO05D003203 9.3e-06 55.1 123 30.9
Lj7P722T34 Lonicera japonica HOM05D001818 ORTHO05D001780 9.3e-06 55.1 89 34.8
Nitab4.5_0004209g0030 Nicotiana tabacum HOM05D001818 ORTHO05D001780 9.3e-06 55.1 175 28.0


User provided reference genes

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