Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014980 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 0.0e+00 1296.2 674 100.0
Actinidia14933 Actinidia chinensis HOM05D001849 ORTHO05D004075 1.8e-210 736.5 653 62.9
Dinv04913 Davidia involucrata HOM05D001849 ORTHO05D004075 2.4e-165 586.6 687 52.0
Dinv16157 Davidia involucrata HOM05D001849 ORTHO05D004075 5.8e-164 582.0 655 55.1
Rhsim09G0102300 Rhododendron simsii HOM05D001849 ORTHO05D004075 3.1e-133 479.9 658 49.4
QL01p003145 Quercus lobata HOM05D001849 ORTHO05D004075 2.0e-95 354.4 651 39.2
CiPaw.05G244500 Carya illinoinensis HOM05D001849 ORTHO05D004075 1.6e-92 344.7 617 40.7
TAR622G0522 Trochodendron aralioides HOM05D001849 ORTHO05D004075 4.5e-92 343.2 722 36.6
Prupe.1G319400 Prunus persica HOM05D001849 ORTHO05D004075 4.3e-82 310.1 662 37.6
Cfa015821 Carpinus fangiana HOM05D001849 ORTHO05D004075 1.1e-74 285.4 568 36.6
Haze_00674 Corylus avellana HOM05D001849 ORTHO05D004075 6.4e-70 269.6 821 30.8
Manes.14G108850 Manihot esculenta HOM05D001849 ORTHO05D004075 6.0e-68 263.1 660 35.0
Atru.chr11.324 Acer truncatum HOM05D001849 ORTHO05D004075 4.7e-57 226.9 304 47.0
Nn3g17987 Nelumbo nucifera HOM05D001849 ORTHO05D004075 6.2e-57 226.5 705 31.2
vmacro10613 Vaccinium macrocarpon HOM05D001849 ORTHO05D004075 6.2e-49 199.9 271 48.0
ATR0681G273 Amborella trichopoda HOM05D001849 ORTHO05D004075 9.0e-48 196.1 692 27.9
Aqoxy7G04079 Aquilegia oxysepala HOM05D001849 ORTHO05D004075 3.4e-47 194.1 700 26.9
MBI16_g25623_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 2.9e-46 191.0 704 29.1
PSO724G0042 Papaver somniferum HOM05D001849 ORTHO05D004075 4.2e-45 187.2 716 27.2
CANSAT01G2891 Cannabis sativa HOM05D001849 ORTHO05D004075 5.4e-45 186.8 645 29.3
HPP92_011068 Vanilla planifolia HOM05D001849 ORTHO05D004075 2.7e-44 184.5 708 27.8
PSO386G0057 Papaver somniferum HOM05D001849 ORTHO05D004075 3.0e-43 181.0 719 28.0
Ciclev10024725m.g Citrus clementina HOM05D001849 ORTHO05D004075 5.1e-43 180.3 704 27.8
Prupe.3G037300 Prunus persica HOM05D001849 ORTHO05D004075 6.6e-43 179.9 720 26.1
Duzib235G1365 Durio zibethinus HOM05D001849 ORTHO05D004075 8.7e-43 179.5 695 28.1
Gorai.009G145100 Gossypium raimondii HOM05D001849 ORTHO05D004075 1.5e-42 178.7 700 27.3
Gohir.A05G138700 Gossypium hirsutum HOM05D001849 ORTHO05D004075 1.3e-41 175.6 710 26.8
MD09G1178000 Malus domestica HOM05D001849 ORTHO05D004075 1.6e-41 175.3 694 26.1
Psat4g166800 Pisum sativum HOM05D001849 ORTHO05D004075 2.8e-41 174.5 673 29.9
MBI19_g29883_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 3.6e-41 174.1 715 26.7
MD16G1035300 Malus domestica HOM05D001849 ORTHO05D004075 8.1e-41 172.9 678 27.6
Solyc06g063010.4 Solanum lycopersicum HOM05D001849 ORTHO05D004075 1.1e-40 172.6 739 26.1
Gohir.D05G140900 Gossypium hirsutum HOM05D001849 ORTHO05D004075 1.4e-40 172.2 700 27.3
Potri.001G165800 Populus trichocarpa HOM05D001849 ORTHO05D004075 1.4e-40 172.2 693 26.1
Sabra01G0127500 Salix brachista HOM05D001849 ORTHO05D004075 1.8e-40 171.8 698 26.8
Potri.003G069200 Populus trichocarpa HOM05D001849 ORTHO05D004075 2.4e-40 171.4 726 27.3
Nn8g38564 Nelumbo nucifera HOM05D001849 ORTHO05D004075 3.1e-40 171.0 733 27.8
Nitab4.5_0003137g0070 Nicotiana tabacum HOM05D001849 ORTHO05D004075 4.0e-40 170.6 756 26.6
Duzib192G0748 Durio zibethinus HOM05D001849 ORTHO05D004075 5.3e-40 170.2 735 26.8
Peaxi162Scf00207g01546 Petunia axillaris HOM05D001849 ORTHO05D004075 5.3e-40 170.2 727 26.4
Lalb_Chr04g0253751 Lupinus albus HOM05D001849 ORTHO05D004075 6.9e-40 169.9 704 27.8
Nitab4.5_0002716g0060 Nicotiana tabacum HOM05D001849 ORTHO05D004075 6.9e-40 169.9 743 26.5
COL.COLO4_30798 Corchorus olitorius HOM05D001849 ORTHO05D004075 9.0e-40 169.5 706 27.5
MD17G1148700 Malus domestica HOM05D001849 ORTHO05D004075 1.2e-39 169.1 691 26.2
CANSAT56G4149 Cannabis sativa HOM05D001849 ORTHO05D004075 3.4e-39 167.5 711 25.9
Sabra03G0040600 Salix brachista HOM05D001849 ORTHO05D004075 3.4e-39 167.5 730 26.8
Sopen06g022460 Solanum pennellii HOM05D001849 ORTHO05D004075 5.8e-39 166.8 737 26.1
Cc04_g01030 Coffea canephora HOM05D001849 ORTHO05D004075 7.6e-39 166.4 699 26.8
Rhsim08G0241300 Rhododendron simsii HOM05D001849 ORTHO05D004689 7.6e-39 166.4 685 26.9
Dinv37967 Davidia involucrata HOM05D001849 ORTHO05D004075 1.3e-38 165.6 695 26.9
CAN.G1743.7 Capsicum annuum HOM05D001849 ORTHO05D004075 1.7e-38 165.2 752 25.7
Actinidia32207 Actinidia chinensis HOM05D001849 ORTHO05D004075 2.2e-38 164.9 162 51.2
Lj9C535T9 Lonicera japonica HOM05D001849 ORTHO05D004075 2.9e-38 164.5 156 50.6
Lj3g0013610 Lotus japonicus HOM05D001849 ORTHO05D004075 2.9e-38 164.5 741 28.9
PSO386G0247 Papaver somniferum HOM05D001849 ORTHO05D004075 3.8e-38 164.1 688 26.5
Manes.04G148200 Manihot esculenta HOM05D001849 ORTHO05D004075 4.9e-38 163.7 747 26.4
SalBow6G5403 Salvia bowleyana HOM05D001849 ORTHO05D004075 8.4e-38 162.9 696 26.0
SalBow6G6581 Salvia bowleyana HOM05D001849 ORTHO05D004075 8.4e-38 162.9 696 26.0
Thecc.06G125000 Theobroma cacao HOM05D001849 ORTHO05D004075 1.1e-37 162.5 681 26.6
Ah.15g095140 Amaranthus hybridus HOM05D001849 ORTHO05D004075 1.9e-37 161.8 163 51.5
Lj6P751T18 Lonicera japonica HOM05D001849 ORTHO05D004075 2.4e-37 161.4 419 36.5
Phvul.010G125600 Phaseolus vulgaris HOM05D001849 ORTHO05D004075 2.4e-37 161.4 723 27.4
CSS0013236 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 4.2e-37 160.6 659 27.2
Lj6A751T55 Lonicera japonica HOM05D001849 ORTHO05D004075 4.2e-37 160.6 117 68.4
PGR102G3102 Punica granatum HOM05D001849 ORTHO05D004075 4.2e-37 160.6 744 26.1
Ca_23413_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004075 5.4e-37 160.2 748 27.4
Haze_16065 Corylus avellana HOM05D001849 ORTHO05D004075 5.4e-37 160.2 128 59.4
RcHm_v2.0_Chr2g0146441 Rosa chinensis HOM05D001849 ORTHO05D004075 5.4e-37 160.2 722 26.0
DCAR_026425 Daucus carota HOM05D001849 ORTHO05D004075 7.1e-37 159.8 721 26.1
GSVIVG01016716001 Vitis vinifera HOM05D001849 ORTHO05D004075 7.1e-37 159.8 690 26.7
FvH4_6g35180 Fragaria vesca HOM05D001849 ORTHO05D004075 1.2e-36 159.1 691 24.5
CSS0036669 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 1.6e-36 158.7 659 27.0
Hma1.2p1_0229F.1_g096780 Hydrangea macrophylla HOM05D001849 ORTHO05D004075 2.7e-36 157.9 678 26.4
arahy.Tifrunner.gnm1.ann1.NEIN3W Arachis hypogaea HOM05D001849 ORTHO05D004075 4.6e-36 157.1 700 27.7
THA.LOC104812264 Tarenaya hassleriana HOM05D001849 ORTHO05D004075 4.6e-36 157.1 711 27.3
TWI59G0043 Tripterygium wilfordii HOM05D001849 ORTHO05D004075 4.6e-36 157.1 705 26.2
arahy.Tifrunner.gnm1.ann1.M8Z2DU Arachis hypogaea HOM05D001849 ORTHO05D004075 6.0e-36 156.8 707 27.6
Gorai.010G174200 Gossypium raimondii HOM05D001849 ORTHO05D004075 6.0e-36 156.8 718 27.6
Lalb_Chr17g0343441 Lupinus albus HOM05D001849 ORTHO05D004075 2.3e-35 154.8 711 26.6
Glyma.07G042100 Glycine max HOM05D001849 ORTHO05D004075 3.0e-35 154.5 117 62.4
QL05p003642 Quercus lobata HOM05D001849 ORTHO05D004075 3.0e-35 154.5 707 24.9
CiPaw.02G133700 Carya illinoinensis HOM05D001849 ORTHO05D004075 3.9e-35 154.1 128 56.2
Gohir.D06G149500 Gossypium hirsutum HOM05D001849 ORTHO05D004075 3.9e-35 154.1 718 27.6
Cfa003510 Carpinus fangiana HOM05D001849 ORTHO05D004075 5.1e-35 153.7 703 25.6
MELO3C024333.2 Cucumis melo HOM05D001849 ORTHO05D004075 5.1e-35 153.7 734 25.2
Psat5g189840 Pisum sativum HOM05D001849 ORTHO05D004075 5.1e-35 153.7 168 48.8
Psat5g189920 Pisum sativum HOM05D004963 ORTHO05D006638 5.1e-35 153.7 168 48.8
TPR.G29998 Trifolium pratense HOM05D001849 ORTHO05D004075 5.1e-35 153.7 692 27.2
FAN02G1816 Fragaria x ananassa HOM05D001849 ORTHO05D004075 8.7e-35 152.9 692 24.0
TWI14G1157 Tripterygium wilfordii HOM05D001849 ORTHO05D004075 8.7e-35 152.9 695 27.1
CiPaw.01G215800 Carya illinoinensis HOM05D001849 ORTHO05D004075 1.5e-34 152.1 618 26.7
Medtr8g021980 Medicago truncatula HOM05D001849 ORTHO05D004075 1.5e-34 152.1 734 27.2
Hund18671 Selenicereus undatus HOM05D001849 ORTHO05D004075 1.5e-34 152.1 204 42.6
Zm00001eb203360 Zea mays HOM05D001849 ORTHO05D004075 1.5e-34 152.1 668 26.2
VMungo0331G0811 Vigna mungo HOM05D001849 ORTHO05D004075 3.3e-34 151.0 117 60.7
Oeu011098.1 Olea europaea HOM05D001849 ORTHO05D004075 4.3e-34 150.6 733 26.6
Nitab4.5_0012739g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004075 5.6e-34 150.2 682 26.4
Migut.I01106 Erythranthe guttata HOM05D001849 ORTHO05D004075 9.6e-34 149.4 701 26.4
PSO724G0283 Papaver somniferum HOM05D001849 ORTHO05D004075 9.6e-34 149.4 673 26.6
Lalb_Chr10g0101311 Lupinus albus HOM05D001849 ORTHO05D004075 1.6e-33 148.7 742 26.4
Sc15g0000590 Simmondsia chinensis HOM05D001849 ORTHO05D004075 1.6e-33 148.7 676 26.2
Atru.chr1.4088 Acer truncatum HOM05D001849 ORTHO05D004075 6.2e-33 146.7 673 27.3
ECA234G1749 Erigeron canadensis HOM05D001849 ORTHO05D004075 8.1e-33 146.4 662 26.0
MSTRG.22534 Avicennia marina HOM05D001849 ORTHO05D004075 1.1e-32 146.0 693 26.3
Glyma.16G010400 Glycine max HOM05D001849 ORTHO05D004075 1.1e-32 146.0 720 26.4
Medtr5g009590 Medicago truncatula HOM05D001849 ORTHO05D004075 1.4e-32 145.6 145 49.7
HanXRQChr10g0311861 Helianthus annuus HOM05D001849 ORTHO05D004075 3.1e-32 144.4 642 27.1
ClCG09G001150 Citrullus lanatus HOM05D001849 ORTHO05D004075 4.0e-32 144.1 702 24.8
AT1G72390 Arabidopsis thaliana HOM05D001849 ORTHO05D004075 5.3e-32 143.7 726 25.9
FAN09G3103 Fragaria x ananassa HOM05D001849 ORTHO05D004075 9.0e-32 142.9 740 24.2
EL10Ac7g16445 Beta vulgaris HOM05D001849 ORTHO05D004075 1.2e-31 142.5 578 27.3
CsaV3_7G034240 Cucumis sativus L. HOM05D001849 ORTHO05D004075 1.2e-31 142.5 724 25.3
Sed0014139 Sechium edule HOM05D001849 ORTHO05D004075 1.5e-31 142.1 733 25.0
SGA_v2.0_scaffold71G23886 Striga asiatica HOM05D001849 ORTHO05D004075 1.5e-31 142.1 670 27.6
BcaB05g24751 Brassica carinata HOM05D001849 ORTHO05D004075 2.0e-31 141.7 723 27.4
FAN14G5889 Fragaria x ananassa HOM05D001849 ORTHO05D004075 2.0e-31 141.7 702 24.9
A02p17980 Brassica napus HOM05D001849 ORTHO05D004075 4.5e-31 140.6 722 28.0
BraA02t06845Z Brassica rapa HOM05D001849 ORTHO05D004075 4.5e-31 140.6 722 28.0
FAN05G2069 Fragaria x ananassa HOM05D001849 ORTHO05D004075 4.5e-31 140.6 715 24.2
BraA07t31416Z Brassica rapa HOM05D001849 ORTHO05D004075 5.8e-31 140.2 154 48.7
ECA247G2654 Erigeron canadensis HOM05D001849 ORTHO05D004075 5.8e-31 140.2 126 54.8
C06p46750 Brassica napus HOM05D001849 ORTHO05D004075 7.6e-31 139.8 154 48.7
BolC6t39719H Brassica oleracea HOM05D001849 ORTHO05D004075 7.6e-31 139.8 154 48.7
AUR62009923 Chenopodium quinoa HOM05D001849 ORTHO05D004075 7.6e-31 139.8 661 26.2
HanXRQChr12g0360181 Helianthus annuus HOM05D001849 ORTHO05D004075 1.3e-30 139.0 643 25.2
BcaC03g15374 Brassica carinata HOM05D001849 ORTHO05D004075 6.5e-30 136.7 724 27.2
C02p29880 Brassica napus HOM05D001849 ORTHO05D004075 6.5e-30 136.7 724 27.2
Carub.0002s1924 Capsella rubella HOM05D001849 ORTHO05D004075 6.5e-30 136.7 154 47.4
BolC2t09038H Brassica oleracea HOM05D001849 ORTHO05D004075 8.4e-30 136.3 724 27.5
Thhalv10018006m.g Eutrema salsugineum HOM05D001849 ORTHO05D004075 1.1e-29 136.0 689 25.7
Nitab4.5_0004322g0020 Nicotiana tabacum HOM05D001849 ORTHO05D004075 1.4e-29 135.6 682 26.0
CARHR065290 Cardamine hirsuta HOM05D001849 ORTHO05D004075 9.3e-29 132.9 690 25.7
vmacro10614 Vaccinium macrocarpon HOM05D001849 ORTHO05D004075 9.3e-29 132.9 88 72.7
AL2G32060 Arabidopsis lyrata HOM05D001849 ORTHO05D004075 1.2e-28 132.5 726 26.0
CDE06G0789 Ceratophyllum demersum HOM05D001849 ORTHO05D004075 2.7e-28 131.3 702 24.9
A07p38580 Brassica napus HOM05D001849 ORTHO05D004075 4.6e-28 130.6 386 30.3
Medtr8g106435 Medicago truncatula HOM05D001849 ORTHO05D004075 7.9e-28 129.8 138 47.1
Aa31LG4G2730 Aethionema arabicum HOM05D001849 ORTHO05D004075 2.5e-26 124.8 702 24.9
Sp5g27470 Schrenkiella parvula HOM05D001849 ORTHO05D004075 3.3e-26 124.4 721 25.7
unitig_747.g21722 Utricularia gibba HOM05D001849 ORTHO05D004075 9.6e-26 122.9 739 25.6
HanXRQChr04g0094421 Helianthus annuus HOM05D001849 ORTHO05D004075 2.8e-25 121.3 127 48.8
Lsat_1_v5_gn_1_37801 Lactuca sativa HOM05D001849 ORTHO05D004075 9.0e-24 116.3 142 47.2
Oeu000390.1 Olea europaea HOM05D001849 ORTHO05D004075 4.5e-23 114.0 680 25.7
Manes.11G016300 Manihot esculenta HOM05D001849 ORTHO05D004075 5.8e-23 113.6 612 24.3
SEGI_18725 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 3.2e-21 107.8 117 46.2
vmacro15055 Vaccinium macrocarpon HOM05D001849 ORTHO05D004075 5.5e-21 107.1 83 56.6
SEGI_32525 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 9.3e-21 106.3 397 28.2
SHI29648 Sapria himalayana HOM05D001849 ORTHO05D004075 2.7e-20 104.8 89 51.7
TAR626G0936 Trochodendron aralioides HOM05D001849 ORTHO05D004075 7.9e-20 103.2 90 52.2
AUR62001442 Chenopodium quinoa HOM05D001849 ORTHO05D004075 3.0e-19 101.3 634 24.3
BcaB03g14988 Brassica carinata HOM05D001849 ORTHO05D004075 1.1e-18 99.4 154 40.3
Atru.chr11.323 Acer truncatum HOM05D001849 ORTHO05D004075 6.3e-17 93.6 318 30.8
AagrBONN_evm.TU.Sc2ySwM_344.4287 Anthoceros agrestis HOM05D001849 ORTHO05D004075 6.3e-17 93.6 129 40.3
Manes.06G063600 Manihot esculenta HOM05D001849 ORTHO05D004075 5.3e-16 90.5 606 24.4
CBR_g31688 Chara braunii HOM05D001849 ORTHO05D004075 6.9e-16 90.1 116 37.1
Mapoly0055s0059 Marchantia polymorpha HOM05D001849 ORTHO05D004075 1.5e-15 89.0 125 34.4
Dinv37845 Davidia involucrata HOM05D001849 ORTHO05D004075 5.9e-15 87.0 659 23.7
Pp3c13_8340 Physcomitrium patens HOM05D001849 ORTHO05D004075 5.0e-14 84.0 109 33.9
Pp3c3_3510 Physcomitrium patens HOM05D001849 ORTHO05D004075 5.0e-14 84.0 141 32.6
CDE07G1198 Ceratophyllum demersum HOM05D001849 ORTHO05D004075 3.2e-13 81.3 650 24.3
Gohir.A06G143000 Gossypium hirsutum HOM05D001849 ORTHO05D004075 3.2e-13 81.3 719 24.1
Medtr8g106415 Medicago truncatula HOM05D001849 ORTHO05D004075 8.8e-11 73.2 66 51.5
Cpa.g.sc25.150 Carica papaya HOM05D001849 ORTHO05D004075 7.4e-10 70.1 601 24.1


User provided reference genes

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