Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014120 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 6.8e-190 667.2 332 100.0
Actinidia32706 Actinidia chinensis HOM05D004877 ORTHO05D005942 5.4e-155 551.2 337 83.1
Dinv37993 Davidia involucrata HOM05D004877 ORTHO05D005942 1.0e-153 547.0 337 83.7
Dinv30451 Davidia involucrata HOM05D004877 ORTHO05D005942 9.5e-152 540.4 337 81.6
CSS0036359 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 2.4e-147 525.8 339 79.9
Cc04_g02700 Coffea canephora HOM05D004877 ORTHO05D005942 2.3e-145 519.2 338 78.1
Lj9A511G47 Lonicera japonica HOM05D004877 ORTHO05D005942 2.3e-145 519.2 341 78.0
TWI18G0989 Tripterygium wilfordii HOM05D004877 ORTHO05D005942 1.5e-144 516.5 335 78.2
SalBow1G2757 Salvia bowleyana HOM05D004877 ORTHO05D005942 6.2e-143 511.1 338 74.9
SalBow2G1418 Salvia bowleyana HOM05D004877 ORTHO05D005942 6.2e-143 511.1 338 74.9
PGSC0003DMG400002534 Solanum tuberosum HOM05D004877 ORTHO05D005942 8.1e-143 510.8 335 76.7
Nitab4.5_0001755g0090 Nicotiana tabacum HOM05D004877 ORTHO05D005942 3.1e-142 508.8 335 76.7
QL05p020530 Quercus lobata HOM05D004877 ORTHO05D005942 1.5e-141 506.5 333 78.1
Sopen03g039700 Solanum pennellii HOM05D004877 ORTHO05D005942 1.5e-141 506.5 335 76.1
Solyc03g120880.4 Solanum lycopersicum HOM05D004877 ORTHO05D005942 4.4e-141 505.0 335 76.1
Eucgr.J02948 Eucalyptus grandis HOM05D004877 ORTHO05D005942 5.8e-141 504.6 334 77.5
Peaxi162Scf00038g00844 Petunia axillaris HOM05D004877 ORTHO05D005942 5.8e-141 504.6 340 75.9
Nitab4.5_0003167g0040 Nicotiana tabacum HOM05D004877 ORTHO05D005942 4.9e-140 501.5 335 75.8
CAN.G438.5 Capsicum annuum HOM05D004877 ORTHO05D005942 1.1e-139 500.4 336 75.0
GSVIVG01017013001 Vitis vinifera HOM05D004877 ORTHO05D005942 1.1e-139 500.4 334 77.8
CiPaw.01G232800 Carya illinoinensis HOM05D004877 ORTHO05D005942 4.2e-139 498.4 335 77.3
Rhsim08G0226300 Rhododendron simsii HOM05D004877 ORTHO05D005942 4.6e-138 495.0 348 76.1
Thecc.06G097500 Theobroma cacao HOM05D004877 ORTHO05D005942 6.0e-138 494.6 333 76.6
Atru.chr1.3498 Acer truncatum HOM05D004877 ORTHO05D005942 1.5e-136 490.0 336 75.3
VMungo1080G0916 Vigna mungo HOM05D004877 ORTHO05D005942 5.6e-136 488.0 336 75.0
Manes.11G035000 Manihot esculenta HOM05D004877 ORTHO05D005942 1.3e-135 486.9 336 75.6
Duzib235G0210 Durio zibethinus HOM05D004877 ORTHO05D005942 3.6e-135 485.3 333 75.4
CANSAT01G3179 Cannabis sativa HOM05D004877 ORTHO05D005942 4.8e-135 485.0 334 74.6
arahy.Tifrunner.gnm1.ann1.64XDM2 Arachis hypogaea HOM05D004877 ORTHO05D005942 6.2e-135 484.6 336 73.5
CiPaw.02G146900 Carya illinoinensis HOM05D004877 ORTHO05D005942 8.1e-135 484.2 335 76.4
Phvul.005G167000 Phaseolus vulgaris HOM05D004877 ORTHO05D005942 8.1e-135 484.2 336 75.9
PGR102G2474 Punica granatum HOM05D004877 ORTHO05D005942 8.1e-135 484.2 339 75.8
arahy.Tifrunner.gnm1.ann1.4Y1F7A Arachis hypogaea HOM05D004877 ORTHO05D005942 1.1e-134 483.8 336 73.2
Glyma.15G018900 Glycine max HOM05D004877 ORTHO05D005942 1.4e-134 483.4 336 73.8
Glyma.13G355300 Glycine max HOM05D004877 ORTHO05D005942 6.9e-134 481.1 336 74.4
Manes.04G132600 Manihot esculenta HOM05D004877 ORTHO05D005942 9.0e-134 480.7 336 74.1
MD17G1186700 Malus domestica HOM05D004877 ORTHO05D005942 1.2e-133 480.3 334 73.4
Ah.01g005680 Amaranthus hybridus HOM05D004877 ORTHO05D005942 3.4e-133 478.8 336 75.0
Ciclev10026016m.g Citrus clementina HOM05D004877 ORTHO05D005942 5.8e-133 478.0 342 73.7
Gohir.A02G118600 Gossypium hirsutum HOM05D004877 ORTHO05D005942 1.3e-132 476.9 334 75.1
Gorai.003G063100 Gossypium raimondii HOM05D004877 ORTHO05D005942 1.7e-132 476.5 334 74.9
AUR62031885 Chenopodium quinoa HOM05D004877 ORTHO05D005942 6.4e-132 474.6 334 74.0
AUR62022182 Chenopodium quinoa HOM05D004877 ORTHO05D005942 1.1e-131 473.8 334 74.3
MD09G1205800 Malus domestica HOM05D004877 ORTHO05D005942 1.4e-131 473.4 334 73.4
Gohir.D03G059200 Gossypium hirsutum HOM05D004877 ORTHO05D005942 2.4e-131 472.6 335 74.3
Lalb_Chr24g0396111 Lupinus albus HOM05D004877 ORTHO05D005942 2.4e-131 472.6 336 73.5
TAR636G0039 Trochodendron aralioides HOM05D004877 ORTHO05D005942 2.4e-131 472.6 334 73.1
Lj3g0003786 Lotus japonicus HOM05D004877 ORTHO05D005942 5.4e-131 471.5 336 72.3
Prupe.3G061200 Prunus persica HOM05D004877 ORTHO05D005942 7.1e-131 471.1 334 72.8
Ca_01157_v3 Cicer arietinum L. HOM05D004877 ORTHO05D005942 1.2e-130 470.3 336 71.4
Duzib192G0168 Durio zibethinus HOM05D004877 ORTHO05D005942 7.9e-130 467.6 333 72.7
Lalb_Chr14g0373091 Lupinus albus HOM05D004877 ORTHO05D005942 1.3e-129 466.8 336 71.7
SGA_v2.0_scaffold69G23330 Striga asiatica HOM05D004877 ORTHO05D005942 1.3e-129 466.8 339 70.5
Sc10g0007170 Simmondsia chinensis HOM05D004877 ORTHO05D005942 3.9e-129 465.3 337 72.4
MSTRG.11036 Avicennia marina HOM05D004877 ORTHO05D005942 1.1e-128 463.8 338 70.4
Psat5g297080 Pisum sativum HOM05D004877 ORTHO05D005942 1.1e-128 463.8 336 70.8
Hund06654 Selenicereus undatus HOM05D004877 ORTHO05D005942 1.5e-128 463.4 334 72.5
MSTRG.22647 Avicennia marina HOM05D004877 ORTHO05D005942 3.3e-128 462.2 340 68.2
DCAR_016196 Daucus carota HOM05D004877 ORTHO05D005942 3.3e-128 462.2 339 69.6
Medtr2g101270 Medicago truncatula HOM05D004877 ORTHO05D005942 4.3e-128 461.8 335 71.6
Lj9A524G48 Lonicera japonica HOM05D004877 ORTHO05D005942 7.4e-128 461.1 356 69.7
Thhalv10021095m.g Eutrema salsugineum HOM05D004877 ORTHO05D005942 9.6e-128 460.7 338 69.2
Sc10g0007240 Simmondsia chinensis HOM05D004877 ORTHO05D005942 2.1e-127 459.5 337 72.1
Potri.001G188300 Populus trichocarpa HOM05D004877 ORTHO05D005942 2.8e-127 459.1 326 72.1
TPR.G37257 Trifolium pratense HOM05D004877 ORTHO05D005942 2.8e-127 459.1 337 70.6
FAN05G1125 Fragaria x ananassa HOM05D004877 ORTHO05D005942 3.7e-127 458.8 336 70.2
TAR624G0319 Trochodendron aralioides HOM05D004877 ORTHO05D005942 3.7e-127 458.8 333 72.4
THA.LOC104817965 Tarenaya hassleriana HOM05D004877 ORTHO05D005942 8.1e-127 457.6 336 69.6
Gohir.D03G059150 Gossypium hirsutum HOM05D004877 ORTHO05D005942 1.4e-126 456.8 321 75.1
Sabra01G0152700 Salix brachista HOM05D004877 ORTHO05D005942 1.4e-126 456.8 336 69.0
Sp3g14680 Schrenkiella parvula HOM05D004877 ORTHO05D005942 1.4e-126 456.8 337 69.7
Oeu001891.1 Olea europaea HOM05D004877 ORTHO05D005942 3.1e-126 455.7 335 68.1
COL.COLO4_30486 Corchorus olitorius HOM05D004877 ORTHO05D005942 4.0e-126 455.3 334 73.1
FvH4_6g32170 Fragaria vesca HOM05D004877 ORTHO05D005942 4.0e-126 455.3 336 69.9
FAN14G1716 Fragaria x ananassa HOM05D004877 ORTHO05D005942 6.9e-126 454.5 336 69.9
FAN09G1375 Fragaria x ananassa HOM05D004877 ORTHO05D005942 1.5e-125 453.4 336 69.9
RcHm_v2.0_Chr2g0140061 Rosa chinensis HOM05D004877 ORTHO05D005942 1.5e-125 453.4 336 70.5
Gorai.011G072600 Gossypium raimondii HOM05D004877 ORTHO05D005942 4.5e-125 451.8 332 70.8
EL10Ac9g22101 Beta vulgaris HOM05D004877 ORTHO05D005942 1.7e-124 449.9 380 64.5
MBI01_g42890_MAGBIO Magnolia biondii HOM05D004877 ORTHO05D005942 4.9e-124 448.4 338 69.2
FAN02G1875 Fragaria x ananassa HOM05D004877 ORTHO05D005942 2.4e-123 446.0 336 69.3
ClCG09G000060 Citrullus lanatus HOM05D004877 ORTHO05D005942 3.2e-123 445.7 337 69.7
AT3G16310 Arabidopsis thaliana HOM05D004877 ORTHO05D005942 7.1e-123 444.5 337 68.8
Hund00671 Selenicereus undatus HOM05D004877 ORTHO05D005942 3.5e-122 442.2 336 68.8
Nn8g39120 Nelumbo nucifera HOM05D004877 ORTHO05D005942 4.6e-122 441.8 356 66.6
CsaV3_7G035410 Cucumis sativus L. HOM05D004877 ORTHO05D005942 1.0e-121 440.7 337 69.1
BcaC05g28894 Brassica carinata HOM05D004877 ORTHO05D005942 1.8e-121 439.9 336 68.2
Gohir.A10G066900 Gossypium hirsutum HOM05D004877 ORTHO05D005942 3.0e-121 439.1 332 69.6
AL3G29060 Arabidopsis lyrata HOM05D004877 ORTHO05D005942 5.1e-121 438.3 337 68.0
MELO3C024450.2 Cucumis melo HOM05D004877 ORTHO05D005942 1.5e-120 436.8 337 68.2
Carub.0003s1606 Capsella rubella HOM05D004877 ORTHO05D005942 5.6e-120 434.9 338 67.5
Lsat_1_v5_gn_4_99980 Lactuca sativa HOM05D004877 ORTHO05D005942 1.6e-119 433.3 358 65.1
BraA05t22146Z Brassica rapa HOM05D004877 ORTHO05D005942 2.1e-119 433.0 333 67.0
C05p50190 Brassica napus HOM05D004877 ORTHO05D005942 2.8e-119 432.6 330 67.6
BolC5t33769H Brassica oleracea HOM05D004877 ORTHO05D005942 2.8e-119 432.6 330 67.6
Sed0013882 Sechium edule HOM05D004877 ORTHO05D005942 2.8e-119 432.6 335 68.1
CARHR091520 Cardamine hirsuta HOM05D004877 ORTHO05D005942 1.1e-118 430.6 327 68.5
Gohir.D10G068000 Gossypium hirsutum HOM05D004877 ORTHO05D005942 9.0e-118 427.6 331 67.4
Aa31LG8G3450 Aethionema arabicum HOM05D004877 ORTHO05D005942 1.5e-117 426.8 334 66.5
BcaB06g25724 Brassica carinata HOM05D004877 ORTHO05D005942 7.6e-117 424.5 342 66.7
Aqoxy7G01469 Aquilegia oxysepala HOM05D004877 ORTHO05D005942 1.0e-116 424.1 335 66.9
arahy.Tifrunner.gnm1.ann1.NE95XN Arachis hypogaea HOM05D004877 ORTHO05D005942 1.3e-113 413.7 357 63.0
arahy.Tifrunner.gnm1.ann1.WG6QSW Arachis hypogaea HOM05D004877 ORTHO05D005942 1.3e-113 413.7 357 63.0
vmacro18867 Vaccinium macrocarpon HOM05D004877 ORTHO05D005942 7.4e-112 407.9 285 75.1
HanXRQChr09g0275881 Helianthus annuus HOM05D004877 ORTHO05D005942 1.2e-109 400.6 355 62.0
unitig_46.g18560 Utricularia gibba HOM05D004877 ORTHO05D005942 1.5e-109 400.2 340 62.4
PSO173G0077 Papaver somniferum HOM05D004877 ORTHO05D005942 3.4e-109 399.1 355 63.9
PSO832G2273 Papaver somniferum HOM05D004877 ORTHO05D005942 8.5e-108 394.4 355 62.5
Sed0014944 Sechium edule HOM05D004877 ORTHO05D005942 4.2e-107 392.1 334 63.2
CDE05G3078 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 7.2e-107 391.3 340 62.9
unitig_37.g12259 Utricularia gibba HOM05D004877 ORTHO05D005942 6.7e-105 384.8 328 60.7
Cpa.g.c40702 Carica papaya HOM05D004877 ORTHO05D005942 9.7e-104 380.9 265 75.5
ATR0705G205 Amborella trichopoda HOM05D004877 ORTHO05D005942 2.6e-101 372.9 343 59.5
CDE05G1429 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 4.2e-99 365.5 340 59.1
ECA232G1650 Erigeron canadensis HOM05D004877 ORTHO05D005942 5.1e-97 358.6 328 60.4
Actinidia39142 Actinidia chinensis HOM05D004877 ORTHO05D005942 3.1e-94 349.4 246 74.8
Haze_15830 Corylus avellana HOM05D002410 ORTHO05D002805 5.2e-89 332.0 325 60.9
TAR624G1397 Trochodendron aralioides HOM05D004877 ORTHO05D005942 5.9e-85 318.5 230 72.6
HanXRQChr16g0501211 Helianthus annuus HOM05D004877 ORTHO05D005942 2.4e-78 296.6 353 48.7
Peaxi162Scf00894g00009 Petunia axillaris HOM05D004877 ORTHO05D005942 6.5e-76 288.5 210 70.0
Migut.I00909 Erythranthe guttata HOM05D004877 ORTHO05D005942 1.5e-75 287.3 266 61.3
Haze_15829 Corylus avellana HOM05D004877 ORTHO05D005942 2.8e-71 273.1 264 58.3
Peaxi162Scf11517g00001 Petunia axillaris HOM05D004877 ORTHO05D005942 6.1e-66 255.4 188 69.7
arahy.Tifrunner.gnm1.ann1.XV48AZ Arachis hypogaea HOM05D004877 ORTHO05D005942 1.2e-64 251.1 187 68.4
SEGI_39894 Sequoiadendron giganteum HOM05D004877 ORTHO05D005942 2.0e-61 240.4 380 42.9
Pp3c5_15240 Physcomitrium patens HOM05D004877 ORTHO05D005942 5.0e-60 235.7 355 42.0
Pp3c6_16260 Physcomitrium patens HOM05D004877 ORTHO05D005942 6.6e-60 235.3 346 44.2
Mapoly0014s0033 Marchantia polymorpha HOM05D004877 ORTHO05D005942 5.8e-56 222.2 363 43.0
Os01g0200500 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 6.0e-53 212.2 216 52.8
Zm00001eb337990 Zea mays HOM05D004877 ORTHO05D005942 2.3e-52 210.3 342 43.0
HPP92_002859 Vanilla planifolia HOM05D004877 ORTHO05D005942 5.0e-52 209.1 223 54.3
Zm00001eb293750 Zea mays HOM05D004877 ORTHO05D005942 1.2e-45 188.0 364 36.5
SMO144G0168 Selaginella moellendorffii HOM05D004877 ORTHO05D005942 2.8e-42 176.8 208 45.2
Os05g0520100 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 2.1e-37 160.6 376 34.8
AagrBONN_evm.TU.Sc2ySwM_117.2493 Anthoceros agrestis HOM05D004877 ORTHO05D005942 1.1e-35 154.8 353 35.4
Zm00001eb353450 Zea mays HOM05D004877 ORTHO05D005942 1.5e-27 127.9 345 31.6
Nn2g11613 Nelumbo nucifera HOM05D004877 ORTHO05D005942 1.6e-26 124.4 106 67.0
CBR_g44943 Chara braunii HOM05D004877 ORTHO05D005942 1.1e-25 121.7 147 48.3
PSO832G4257 Papaver somniferum HOM05D005944 ORTHO05D007188 3.1e-25 120.2 106 56.6
PSO675G8939 Papaver somniferum HOM05D004877 ORTHO05D005942 5.3e-25 119.4 124 51.6
PSO824G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 1.5e-24 117.9 85 68.2
PSO824G0035 Papaver somniferum HOM05D004877 ORTHO05D007188 4.4e-24 116.3 81 64.2
SEGI_33810 Sequoiadendron giganteum HOM05D004877 ORTHO05D000002 3.8e-23 113.2 125 48.8
PSO173G0103 Papaver somniferum HOM05D005944 ORTHO05D007188 1.4e-22 111.3 81 61.7
Nn5g29960 Nelumbo nucifera HOM05D004877 ORTHO05D005942 5.6e-19 99.4 104 58.7
MD07G1258000 Malus domestica HOM05D004877 ORTHO05D005942 6.2e-18 95.9 55 80.0
TAR629G0138 Trochodendron aralioides HOM05D004753 ORTHO05D005920 4.0e-17 93.2 80 60.0
Cre12.g553050 Chlamydomonas reinhardtii HOM05D004877 ORTHO05D005942 6.9e-17 92.4 149 34.2
MD16G1217600 Malus domestica HOM05D004877 ORTHO05D005942 6.9e-17 92.4 72 59.7
PRCOL_00002288 Prasinoderma coloniale HOM05D004877 ORTHO05D005942 2.9e-15 87.0 79 46.8
TAR624G1091 Trochodendron aralioides HOM05D004877 ORTHO05D005942 6.4e-15 85.9 58 70.7
Cpa.g.c43067 Carica papaya HOM05D004877 ORTHO05D005942 1.9e-11 74.3 41 82.9
Pp3c1_40780 Physcomitrium patens HOM05D004877 ORTHO05D005942 1.1e-09 68.6 160 30.6
PSO173G0086 Papaver somniferum HOM05D005944 ORTHO05D007188 1.4e-09 68.2 53 56.6
PSO832G3272 Papaver somniferum HOM05D005944 ORTHO05D007188 4.0e-09 66.6 43 72.1
MCO07G475 Micromonas commoda HOM05D004877 ORTHO05D005942 2.0e-08 64.3 166 26.5
PSO507G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 8.4e-07 58.9 38 73.7


User provided reference genes

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