Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013637 Camellia sinensis var. sinensis HOM05D004256 ORTHO05D005224 8.6e-199 696.8 357 100.0
Actinidia31384 Actinidia chinensis HOM05D004256 ORTHO05D005224 6.6e-151 537.7 358 78.2
Dinv11058 Davidia involucrata HOM05D004256 ORTHO05D005224 3.5e-136 488.8 361 71.7
Dinv16826 Davidia involucrata HOM05D004256 ORTHO05D005224 3.9e-135 485.3 357 70.9
Rhsim02G0162800 Rhododendron simsii HOM05D004256 ORTHO05D005224 6.3e-133 478.0 357 71.4
GSVIVG01021670001 Vitis vinifera HOM05D004256 ORTHO05D005224 1.1e-124 450.7 356 66.3
Peaxi162Scf00670g00215 Petunia axillaris HOM05D004256 ORTHO05D005224 1.5e-123 446.8 358 64.8
TAR627G0580 Trochodendron aralioides HOM05D004256 ORTHO05D005224 7.7e-123 444.5 359 63.8
TWI38G1119 Tripterygium wilfordii HOM05D004256 ORTHO05D005224 7.9e-120 434.5 358 61.5
Sopen02g019190 Solanum pennellii HOM05D004256 ORTHO05D005224 1.0e-119 434.1 358 61.7
Solyc02g070030.4 Solanum lycopersicum HOM05D004256 ORTHO05D005224 1.1e-118 430.6 358 61.2
CAN.G79.16 Capsicum annuum HOM05D004256 ORTHO05D005224 1.7e-117 426.8 358 60.6
Nitab4.5_0001583g0180 Nicotiana tabacum HOM05D004256 ORTHO05D005224 1.7e-117 426.8 358 62.8
Cfa004790 Carpinus fangiana HOM05D004256 ORTHO05D005224 3.7e-117 425.6 358 61.5
CiPaw.09G142400 Carya illinoinensis HOM05D004256 ORTHO05D005224 6.3e-117 424.9 368 62.5
Nitab4.5_0001225g0210 Nicotiana tabacum HOM05D004256 ORTHO05D005224 9.1e-116 421.0 358 62.3
TWI63G0578 Tripterygium wilfordii HOM05D004256 ORTHO05D005224 5.9e-115 418.3 358 60.9
Prupe.4G091400 Prunus persica HOM05D004256 ORTHO05D005224 1.0e-114 417.5 342 61.4
MD05G1271600 Malus domestica HOM05D004256 ORTHO05D005224 2.2e-114 416.4 358 59.5
QL05p062735 Quercus lobata HOM05D004256 ORTHO05D005224 2.2e-114 416.4 360 61.1
Lj1A1161T63 Lonicera japonica HOM05D004256 ORTHO05D005224 1.4e-113 413.7 356 60.7
Manes.06G068000 Manihot esculenta HOM05D004256 ORTHO05D005224 1.9e-113 413.3 358 59.8
RcHm_v2.0_Chr5g0016471 Rosa chinensis HOM05D004256 ORTHO05D005224 4.2e-113 412.1 373 57.1
Gohir.D06G123900 Gossypium hirsutum HOM05D004256 ORTHO05D005224 2.7e-112 409.5 358 58.4
Nn2g15522 Nelumbo nucifera HOM05D004256 ORTHO05D005224 2.7e-112 409.5 359 59.9
Atru.chr10.795 Acer truncatum HOM05D004256 ORTHO05D005224 6.1e-112 408.3 358 59.8
Cc09_g07800 Coffea canephora HOM05D004256 ORTHO05D005224 6.1e-112 408.3 351 60.7
Gorai.010G144100 Gossypium raimondii HOM05D004256 ORTHO05D005224 7.9e-112 407.9 358 58.1
Sc17g0004590 Simmondsia chinensis HOM05D004256 ORTHO05D005224 1.0e-111 407.5 350 60.0
Gohir.A06G119600 Gossypium hirsutum HOM05D004256 ORTHO05D005224 1.4e-111 407.1 358 58.7
arahy.Tifrunner.gnm1.ann1.71MGM7 Arachis hypogaea HOM05D004256 ORTHO05D005224 3.0e-111 406.0 358 57.8
Haze_10384 Corylus avellana HOM05D004256 ORTHO05D005224 3.0e-111 406.0 362 60.5
Haze_10386 Corylus avellana HOM05D004256 ORTHO05D005224 3.0e-111 406.0 362 60.5
arahy.Tifrunner.gnm1.ann1.NJCF43 Arachis hypogaea HOM05D004256 ORTHO05D005224 6.7e-111 404.8 350 58.9
Thecc.06G004200 Theobroma cacao HOM05D004256 ORTHO05D005224 1.7e-109 400.2 358 57.3
Ciclev10014179m.g Citrus clementina HOM05D004256 ORTHO05D005224 2.8e-109 399.4 344 60.8
COL.COLO4_26853 Corchorus olitorius HOM05D004256 ORTHO05D005224 4.8e-109 398.7 362 56.1
MD10G1252200 Malus domestica HOM05D004256 ORTHO05D005224 6.3e-109 398.3 358 57.5
FAN11G3535 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.2e-107 394.0 373 55.0
Potri.001G465500 Populus trichocarpa HOM05D004256 ORTHO05D005224 2.0e-107 393.3 351 57.8
ClCG03G008210 Citrullus lanatus HOM05D004256 ORTHO05D005224 4.5e-107 392.1 356 56.7
Sabra16G0315900 Salix brachista HOM05D004256 ORTHO05D005224 5.9e-107 391.7 351 57.8
FvH4_3g10230 Fragaria vesca HOM05D004256 ORTHO05D005224 1.0e-106 391.0 373 54.7
Lalb_Chr12g0208801 Lupinus albus HOM05D004256 ORTHO05D005224 1.3e-106 390.6 341 58.9
Oeu021898.3 Olea europaea HOM05D004256 ORTHO05D005224 2.2e-106 389.8 358 58.9
ECA236G4703 Erigeron canadensis HOM05D004256 ORTHO05D005224 5.0e-106 388.7 343 58.3
FAN16G0878 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.1e-105 387.5 373 54.2
MELO3C002826.2 Cucumis melo HOM05D004256 ORTHO05D005224 3.2e-105 386.0 356 55.9
FAN21G3884 Fragaria x ananassa HOM05D004256 ORTHO05D005224 7.2e-105 384.8 373 53.9
CsaV3_1G037200 Cucumis sativus L. HOM05D004256 ORTHO05D005224 1.6e-104 383.6 356 56.2
Duzib192G0446 Durio zibethinus HOM05D004256 ORTHO05D005224 4.7e-104 382.1 358 55.3
Sed0001829 Sechium edule HOM05D004256 ORTHO05D005224 1.4e-103 380.6 356 55.3
DCAR_003847 Daucus carota HOM05D004256 ORTHO05D005224 3.0e-103 379.4 349 57.3
MBI02_g25367_MAGBIO Magnolia biondii HOM05D004256 ORTHO05D005224 2.0e-102 376.7 361 56.5
Lalb_Chr13g0291451 Lupinus albus HOM05D004256 ORTHO05D005224 7.5e-102 374.8 352 58.5
Glyma.08G081600 Glycine max HOM05D004256 ORTHO05D005224 2.2e-101 373.2 350 56.0
Glyma.05G126600 Glycine max HOM05D004256 ORTHO05D005224 8.2e-101 371.3 350 56.6
Potri.011G163600 Populus trichocarpa HOM05D004256 ORTHO05D005224 1.1e-100 370.9 351 57.3
PGR031G3593 Punica granatum HOM05D004256 ORTHO05D005224 4.1e-100 369.0 343 56.6
Phvul.002G198200 Phaseolus vulgaris HOM05D004256 ORTHO05D005224 2.0e-99 366.7 343 55.7
SGA_v2.0_scaffold106G30680 Striga asiatica HOM05D004256 ORTHO05D005224 1.0e-98 364.4 352 54.0
HanXRQChr04g0117221 Helianthus annuus HOM05D004256 ORTHO05D005224 1.7e-98 363.6 354 55.6
Migut.H01323 Erythranthe guttata HOM05D004256 ORTHO05D005224 3.8e-98 362.5 359 55.2
TPR.G30378 Trifolium pratense HOM05D004256 ORTHO05D005224 5.0e-98 362.1 358 55.3
FAN04G0519 Fragaria x ananassa HOM05D004256 ORTHO05D005224 8.5e-98 361.3 369 52.8
Lj4g0013937 Lotus japonicus HOM05D004256 ORTHO05D005224 1.1e-97 360.9 362 52.5
SalBow7G4118 Salvia bowleyana HOM05D004256 ORTHO05D005224 1.5e-97 360.5 354 53.1
FAN18G3233 Fragaria x ananassa HOM05D004256 ORTHO05D005224 4.2e-97 359.0 351 54.1
FAN13G2402 Fragaria x ananassa HOM05D004256 ORTHO05D005224 5.5e-97 358.6 356 53.7
Psat7g093560 Pisum sativum HOM05D004256 ORTHO05D005224 7.2e-97 358.2 358 54.5
CANSAT35G1931 Cannabis sativa HOM05D004256 ORTHO05D005224 9.4e-97 357.8 358 55.0
Ca_18290_v3 Cicer arietinum L. HOM05D004256 ORTHO05D005224 4.7e-96 355.5 358 55.3
Eucgr.K01946 Eucalyptus grandis HOM05D004256 ORTHO05D005224 4.7e-96 355.5 350 54.6
AUR62043099 Chenopodium quinoa HOM05D004256 ORTHO05D005224 1.4e-95 354.0 344 54.4
AUR62034030 Chenopodium quinoa HOM05D004256 ORTHO05D005224 8.8e-95 351.3 344 53.8
Sp7g19000 Schrenkiella parvula HOM05D004256 ORTHO05D005224 8.8e-95 351.3 359 52.6
Aqoxy5G02462 Aquilegia oxysepala HOM05D004256 ORTHO05D005224 1.2e-94 350.9 361 52.9
PSO675G2772 Papaver somniferum HOM05D004256 ORTHO05D005224 2.0e-94 350.1 357 53.5
THA.LOC104812246 Tarenaya hassleriana HOM05D004256 ORTHO05D005224 7.5e-94 348.2 349 51.0
Ah.14g086130 Amaranthus hybridus HOM05D004256 ORTHO05D005224 1.7e-93 347.1 344 54.7
Lsat_1_v5_gn_7_34341 Lactuca sativa HOM05D004256 ORTHO05D005224 4.8e-93 345.5 350 54.9
Medtr4g094545 Medicago truncatula HOM05D004256 ORTHO05D005224 1.1e-92 344.4 352 53.4
EL10Ac8g19544 Beta vulgaris HOM05D004256 ORTHO05D005224 4.1e-92 342.4 353 52.7
Thhalv10024326m.g Eutrema salsugineum HOM05D004256 ORTHO05D005224 4.1e-92 342.4 344 53.2
Aa31LG6G2980 Aethionema arabicum HOM05D004256 ORTHO05D005224 1.7e-90 337.0 345 51.9
Carub.0007s2052 Capsella rubella HOM05D004256 ORTHO05D005224 2.2e-90 336.7 345 53.0
AL7G33240 Arabidopsis lyrata HOM05D004256 ORTHO05D005224 5.5e-89 332.0 346 53.2
BraA01t01176Z Brassica rapa HOM05D004256 ORTHO05D005224 5.5e-89 332.0 344 52.0
CARHR227470 Cardamine hirsuta HOM05D004256 ORTHO05D005224 7.2e-89 331.6 343 52.5
BolC1t01426H Brassica oleracea HOM05D004256 ORTHO05D005224 9.5e-89 331.3 344 51.5
AT4G20910 Arabidopsis thaliana HOM05D004256 ORTHO05D005224 2.1e-88 330.1 344 53.8
FAN08G1809 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.4e-84 317.4 356 48.9
HPP92_009410 Vanilla planifolia HOM05D004256 ORTHO05D005224 1.1e-76 291.2 343 45.5
Eucgr.L00874 Eucalyptus grandis HOM05D004256 ORTHO05D005224 1.2e-75 287.7 272 55.5
AL7G33230 Arabidopsis lyrata HOM05D004256 ORTHO05D005224 1.6e-75 287.3 352 46.6
BcaNung04718 Brassica carinata HOM05D004256 ORTHO05D005224 3.9e-74 282.7 341 44.9
AT4G20920 Arabidopsis thaliana HOM05D004256 ORTHO05D005224 2.5e-73 280.0 352 45.7
C01p14740 Brassica napus HOM05D004256 ORTHO05D005224 2.5e-73 280.0 351 45.6
Oeu014331.2 Olea europaea HOM05D004256 ORTHO05D005224 7.3e-73 278.5 238 60.9
CARHR227480 Cardamine hirsuta HOM05D004256 ORTHO05D005224 1.2e-72 277.7 359 45.7
BcaC09g51292 Brassica carinata HOM05D004256 ORTHO05D005224 1.6e-72 277.3 351 45.3
BraA01t01177Z Brassica rapa HOM05D004256 ORTHO05D005224 6.2e-72 275.4 353 45.0
Thhalv10024347m.g Eutrema salsugineum HOM05D004256 ORTHO05D005224 8.0e-72 275.0 351 44.7
Carub.0007s2051 Capsella rubella HOM05D004256 ORTHO05D005224 2.3e-71 273.5 348 45.4
FAN18G2742 Fragaria x ananassa HOM05D004256 ORTHO05D005224 8.9e-71 271.6 410 41.5
BraA01t01178Z Brassica rapa HOM05D004256 ORTHO05D005224 1.2e-70 271.2 360 42.8
BcaC09g51291 Brassica carinata HOM05D004256 ORTHO05D005224 4.4e-70 269.2 354 42.9
Zm00001eb300700 Zea mays HOM05D004256 ORTHO05D005224 1.3e-69 267.7 346 44.5
A01p12320 Brassica napus HOM05D004256 ORTHO05D005224 2.9e-69 266.5 359 42.3
BolC1t01427H Brassica oleracea HOM05D004256 ORTHO05D005224 4.9e-69 265.8 348 44.5
Os07g0164000 Oryza sativa ssp. japonica HOM05D004256 ORTHO05D005224 4.9e-69 265.8 351 41.6
C01p14750 Brassica napus HOM05D004256 ORTHO05D005224 1.1e-68 264.6 355 42.8
CDE02G4682 Ceratophyllum demersum HOM05D004256 ORTHO05D005224 8.6e-66 255.0 259 50.2
FAN25G0985 Fragaria x ananassa HOM05D004256 ORTHO05D005224 7.3e-65 251.9 213 57.7
BolC1t01428H Brassica oleracea HOM05D004256 ORTHO05D005224 2.8e-64 250.0 359 41.2
VMungo0251G1323 Vigna mungo HOM05D004256 ORTHO05D005224 1.1e-63 248.1 265 50.9
Cpa.g.sc166.41 Carica papaya HOM05D004256 ORTHO05D007693 1.4e-63 247.7 244 52.0
BcaB03g11710 Brassica carinata HOM05D004256 ORTHO05D005224 8.1e-56 221.9 351 38.5
BcaC01g00730 Brassica carinata HOM05D004256 ORTHO05D005224 9.9e-54 214.9 198 53.0
BcaC09g51293 Brassica carinata HOM05D004256 ORTHO05D005224 3.3e-49 199.9 227 46.7
ATR1098G117 Amborella trichopoda HOM05D004256 ORTHO05D005224 1.6e-48 197.6 240 44.6
Mapoly0004s0071 Marchantia polymorpha HOM05D004256 ORTHO05D005224 3.9e-42 176.4 390 33.8
unitig_0.g923 Utricularia gibba HOM05D004256 ORTHO05D005224 1.5e-38 164.5 359 32.3
HanXRQChr04g0117231 Helianthus annuus HOM05D004256 ORTHO05D005224 1.7e-37 161.0 181 51.9
Pp3c1_60 Physcomitrium patens HOM05D004256 ORTHO05D005224 8.4e-37 158.7 361 32.4
Haze_10382 Corylus avellana HOM05D004256 ORTHO05D005224 1.1e-36 158.3 157 56.1
Haze_10375 Corylus avellana HOM05D004256 ORTHO05D005224 1.5e-33 147.9 210 42.4
Haze_01153 Corylus avellana HOM05D004256 ORTHO05D005224 2.5e-33 147.1 150 56.0
SMO165G0118 Selaginella moellendorffii HOM05D004256 ORTHO05D005224 1.6e-27 127.9 252 34.1
VMungo0251G1407 Vigna mungo HOM05D004256 ORTHO05D005224 6.2e-24 115.9 77 71.4
PGSC0003DMG400021115 Solanum tuberosum HOM05D004256 ORTHO05D005224 1.1e-23 115.2 105 55.2
AagrBONN_evm.TU.Sc2ySwM_117.1656 Anthoceros agrestis HOM05D004256 ORTHO05D005224 3.1e-23 113.6 266 32.3
Sp7g19005 Schrenkiella parvula HOM05D004256 ORTHO05D005224 4.0e-23 113.2 187 36.9
BcaNung04717 Brassica carinata HOM05D004256 ORTHO05D005224 5.3e-23 112.8 263 31.6
BcaC06g34131 Brassica carinata HOM05D004256 ORTHO05D005224 7.6e-22 109.0 145 44.1
FvH4_5g29180 Fragaria vesca HOM05D004256 ORTHO05D005224 4.9e-21 106.3 89 61.8
BcaC08g44368 Brassica carinata HOM05D004256 ORTHO05D005224 1.1e-17 95.1 151 38.4
BcaC04g20971 Brassica carinata HOM05D004256 ORTHO05D005224 4.3e-17 93.2 151 37.7
arahy.Tifrunner.gnm1.ann1.2P4BCH Arachis hypogaea HOM05D004256 ORTHO05D005224 5.3e-15 86.3 229 30.6
Actinidia33023 Actinidia chinensis HOM05D004256 ORTHO05D005224 6.9e-15 85.9 65 69.2
BcaC02g08729 Brassica carinata HOM05D004256 ORTHO05D021760 2.6e-14 84.0 104 44.2
C01p17580 Brassica napus HOM05D004256 ORTHO05D005224 8.5e-13 79.0 88 48.9
BolC1t01694H Brassica oleracea HOM05D004256 ORTHO05D021760 1.9e-12 77.8 88 48.9
C03p79980 Brassica napus HOM05D004256 ORTHO05D032009 2.5e-12 77.4 87 48.3
BolC3t20250H Brassica oleracea HOM05D004256 ORTHO05D032009 2.5e-12 77.4 87 48.3
BcaC09g51040 Brassica carinata HOM05D004256 ORTHO05D005224 3.2e-12 77.0 86 48.8
BcaC01g00450 Brassica carinata HOM05D004256 ORTHO05D032009 7.2e-12 75.9 87 47.1
CBR_g29910 Chara braunii HOM05D000019 ORTHO05D005224 7.9e-11 72.4 357 24.1
BolC6t37010H Brassica oleracea HOM05D004256 ORTHO05D005224 1.8e-10 71.2 106 38.7
BolC1t04773H Brassica oleracea HOM05D004256 ORTHO05D021760 5.1e-10 69.7 80 47.5
A09p29560 Brassica napus HOM05D004256 ORTHO05D005224 4.3e-09 66.6 122 36.9
C01p48000 Brassica napus HOM05D004256 ORTHO05D021760 4.8e-08 63.2 103 36.9
C03p36320 Brassica napus HOM05D004256 ORTHO05D021760 1.4e-07 61.6 80 43.8
BolC3t15944H Brassica oleracea HOM05D004256 ORTHO05D021760 1.4e-07 61.6 80 43.8


User provided reference genes

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