Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013236 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 0.0e+00 2336.6 1321 100.0
CSS0036669 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 0.0e+00 2328.1 1322 99.7
Rhsim08G0241300 Rhododendron simsii HOM05D001849 ORTHO05D004689 0.0e+00 1519.6 1432 66.8
Dinv37967 Davidia involucrata HOM05D001849 ORTHO05D004075 0.0e+00 1471.1 1356 67.6
Hma1.2p1_0229F.1_g096780 Hydrangea macrophylla HOM05D001849 ORTHO05D004075 0.0e+00 1369.0 1360 64.3
Dinv37845 Davidia involucrata HOM05D001849 ORTHO05D004075 0.0e+00 1282.7 1197 68.6
Thecc.06G125000 Theobroma cacao HOM05D001849 ORTHO05D004075 0.0e+00 1261.9 1409 60.0
CiPaw.01G215800 Carya illinoinensis HOM05D001849 ORTHO05D004075 0.0e+00 1261.5 1395 59.1
DCAR_026425 Daucus carota HOM05D001849 ORTHO05D004075 0.0e+00 1259.6 1359 59.6
Sopen06g022460 Solanum pennellii HOM05D001849 ORTHO05D004075 0.0e+00 1256.1 1368 59.1
Prupe.3G037300 Prunus persica HOM05D001849 ORTHO05D004075 0.0e+00 1250.7 1399 59.8
COL.COLO4_30798 Corchorus olitorius HOM05D001849 ORTHO05D004075 0.0e+00 1246.1 1389 60.6
Duzib192G0748 Durio zibethinus HOM05D001849 ORTHO05D004075 0.0e+00 1242.3 1391 60.1
Manes.04G148200 Manihot esculenta HOM05D001849 ORTHO05D004075 0.0e+00 1221.5 1370 59.2
CAN.G1743.7 Capsicum annuum HOM05D001849 ORTHO05D004075 0.0e+00 1217.6 1353 58.0
CiPaw.02G133700 Carya illinoinensis HOM05D001849 ORTHO05D004075 0.0e+00 1217.6 1402 57.7
TWI14G1157 Tripterygium wilfordii HOM05D001849 ORTHO05D004075 0.0e+00 1211.1 1363 56.5
Ciclev10024725m.g Citrus clementina HOM05D001849 ORTHO05D004075 0.0e+00 1190.6 1293 60.4
Gorai.010G174200 Gossypium raimondii HOM05D001849 ORTHO05D004075 0.0e+00 1190.6 1369 58.6
Gohir.D06G149500 Gossypium hirsutum HOM05D001849 ORTHO05D004075 0.0e+00 1185.6 1375 58.3
SalBow6G5403 Salvia bowleyana HOM05D001849 ORTHO05D004075 0.0e+00 1180.6 1360 58.2
TWI59G0043 Tripterygium wilfordii HOM05D001849 ORTHO05D004075 0.0e+00 1179.9 1364 56.8
RcHm_v2.0_Chr2g0146441 Rosa chinensis HOM05D001849 ORTHO05D004075 0.0e+00 1178.7 1399 57.1
Duzib235G1365 Durio zibethinus HOM05D001849 ORTHO05D004075 0.0e+00 1177.9 1376 59.2
QL05p003642 Quercus lobata HOM05D001849 ORTHO05D004075 0.0e+00 1176.4 1461 54.3
MD09G1178000 Malus domestica HOM05D001849 ORTHO05D004075 0.0e+00 1167.9 1394 56.8
Potri.001G165800 Populus trichocarpa HOM05D001849 ORTHO05D004075 0.0e+00 1167.1 1385 56.2
MD17G1148700 Malus domestica HOM05D001849 ORTHO05D004075 0.0e+00 1166.0 1379 55.8
Sabra01G0127500 Salix brachista HOM05D001849 ORTHO05D004075 0.0e+00 1159.8 1369 56.0
Gohir.A05G138700 Gossypium hirsutum HOM05D001849 ORTHO05D004075 0.0e+00 1151.7 1389 57.7
FvH4_6g35180 Fragaria vesca HOM05D001849 ORTHO05D004075 0.0e+00 1151.3 1376 58.2
FAN14G5889 Fragaria x ananassa HOM05D001849 ORTHO05D004075 0.0e+00 1147.9 1390 58.1
Lj9C535T9 Lonicera japonica HOM05D001849 ORTHO05D004075 0.0e+00 1138.6 1418 58.5
Ca_23413_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004075 0.0e+00 1135.6 1357 55.6
MSTRG.22534 Avicennia marina HOM05D001849 ORTHO05D004075 0.0e+00 1134.0 1343 58.2
Cfa003510 Carpinus fangiana HOM05D001849 ORTHO05D004075 0.0e+00 1133.6 1355 56.2
Gorai.009G145100 Gossypium raimondii HOM05D001849 ORTHO05D004075 0.0e+00 1126.3 1404 57.3
FAN02G1816 Fragaria x ananassa HOM05D001849 ORTHO05D004075 0.0e+00 1123.6 1401 57.0
Phvul.010G125600 Phaseolus vulgaris HOM05D001849 ORTHO05D004075 0.0e+00 1120.9 1349 55.8
Gohir.D05G140900 Gossypium hirsutum HOM05D001849 ORTHO05D004075 0.0e+00 1117.8 1385 57.5
Nitab4.5_0002716g0060 Nicotiana tabacum HOM05D001849 ORTHO05D004075 0.0e+00 1115.1 1206 57.6
Lalb_Chr04g0253751 Lupinus albus HOM05D001849 ORTHO05D004075 0.0e+00 1112.1 1346 56.2
VMungo0331G0811 Vigna mungo HOM05D001849 ORTHO05D004075 0.0e+00 1108.6 1348 54.1
FAN05G2069 Fragaria x ananassa HOM05D001849 ORTHO05D004075 0.0e+00 1106.3 1425 55.9
Medtr8g021980 Medicago truncatula HOM05D001849 ORTHO05D004075 0.0e+00 1105.9 1356 54.5
Lj3g0013610 Lotus japonicus HOM05D001849 ORTHO05D004075 0.0e+00 1104.0 1362 54.3
Glyma.07G042100 Glycine max HOM05D001849 ORTHO05D004075 0.0e+00 1102.4 1376 54.4
FAN09G3103 Fragaria x ananassa HOM05D001849 ORTHO05D004075 0.0e+00 1099.0 1429 55.7
Nn8g38564 Nelumbo nucifera HOM05D001849 ORTHO05D004075 0.0e+00 1095.5 1416 55.6
Glyma.16G010400 Glycine max HOM05D001849 ORTHO05D004075 0.0e+00 1094.0 1356 53.2
Hund18671 Selenicereus undatus HOM05D001849 ORTHO05D004075 0.0e+00 1079.7 1357 52.6
arahy.Tifrunner.gnm1.ann1.M8Z2DU Arachis hypogaea HOM05D001849 ORTHO05D004075 0.0e+00 1076.6 1380 53.9
Lalb_Chr10g0101311 Lupinus albus HOM05D001849 ORTHO05D004075 9.0e-312 1074.3 1347 52.7
PGR102G3102 Punica granatum HOM05D001849 ORTHO05D004075 4.5e-311 1071.6 1374 53.4
CANSAT56G4149 Cannabis sativa HOM05D001849 ORTHO05D004075 8.1e-311 1070.8 1383 58.1
arahy.Tifrunner.gnm1.ann1.NEIN3W Arachis hypogaea HOM05D001849 ORTHO05D004075 1.4e-310 1070.1 1380 53.6
Sabra03G0040600 Salix brachista HOM05D001849 ORTHO05D004075 4.0e-310 1068.5 1494 51.1
Aqoxy7G04079 Aquilegia oxysepala HOM05D001849 ORTHO05D004075 5.2e-310 1068.1 1348 53.6
Gohir.A06G143000 Gossypium hirsutum HOM05D001849 ORTHO05D004075 3.8e-308 1062.0 1364 55.0
Lalb_Chr17g0343441 Lupinus albus HOM05D001849 ORTHO05D004075 2.4e-307 1059.3 1342 53.2
Psat4g166800 Pisum sativum HOM05D001849 ORTHO05D004075 6.0e-306 1054.7 1364 53.2
Sed0014139 Sechium edule HOM05D001849 ORTHO05D004075 1.7e-305 1053.1 1366 52.5
GSVIVG01016716001 Vitis vinifera HOM05D001849 ORTHO05D004075 2.3e-305 1052.7 1022 61.6
Nitab4.5_0003137g0070 Nicotiana tabacum HOM05D001849 ORTHO05D004075 8.1e-303 1044.3 1152 53.6
CsaV3_7G034240 Cucumis sativus L. HOM05D001849 ORTHO05D004075 1.1e-302 1043.9 1397 51.7
Potri.003G069200 Populus trichocarpa HOM05D001849 ORTHO05D004075 1.1e-302 1043.9 1326 54.0
TPR.G29998 Trifolium pratense HOM05D001849 ORTHO05D004075 6.9e-302 1041.2 1348 53.4
Cc04_g01030 Coffea canephora HOM05D001849 ORTHO05D004075 1.4e-299 1033.5 1146 56.5
MELO3C024333.2 Cucumis melo HOM05D001849 ORTHO05D004075 1.9e-296 1023.1 1410 51.1
SalBow6G6581 Salvia bowleyana HOM05D001849 ORTHO05D004075 5.6e-296 1021.5 1221 54.1
Sc15g0000590 Simmondsia chinensis HOM05D001849 ORTHO05D004075 4.0e-294 1015.4 1348 51.5
Oeu000390.1 Olea europaea HOM05D001849 ORTHO05D004075 2.7e-282 976.1 1424 47.2
EL10Ac7g16445 Beta vulgaris HOM05D001849 ORTHO05D004075 6.2e-279 964.9 1355 48.7
Solyc06g063010.4 Solanum lycopersicum HOM05D001849 ORTHO05D004075 2.4e-278 963.0 1352 47.6
Cpa.g.sc25.150 Carica papaya HOM05D001849 ORTHO05D004075 1.2e-277 960.7 1221 55.2
Actinidia32208 Actinidia chinensis HOM05D001849 ORTHO05D004075 1.2e-274 950.7 1023 62.2
Peaxi162Scf00207g01546 Petunia axillaris HOM05D001849 ORTHO05D004075 2.1e-274 949.9 903 58.7
THA.LOC104812264 Tarenaya hassleriana HOM05D001849 ORTHO05D004075 6.7e-273 944.9 1386 50.5
Migut.I01106 Erythranthe guttata HOM05D001849 ORTHO05D004075 6.3e-271 938.3 1376 50.9
Thhalv10018006m.g Eutrema salsugineum HOM05D001849 ORTHO05D004075 8.2e-271 937.9 1419 47.9
AL2G32060 Arabidopsis lyrata HOM05D001849 ORTHO05D004075 9.3e-267 924.5 1377 48.9
PSO724G0042 Papaver somniferum HOM05D001849 ORTHO05D004075 9.3e-267 924.5 1482 46.4
PSO386G0057 Papaver somniferum HOM05D001849 ORTHO05D004075 1.2e-266 924.1 1491 45.3
BraA07t31416Z Brassica rapa HOM05D001849 ORTHO05D004075 1.8e-265 920.2 1405 47.8
AT1G72390 Arabidopsis thaliana HOM05D001849 ORTHO05D004075 8.7e-265 917.9 1382 48.6
CARHR065290 Cardamine hirsuta HOM05D001849 ORTHO05D004075 1.3e-263 914.1 1415 46.9
A07p38580 Brassica napus HOM05D001849 ORTHO05D004075 8.2e-263 911.4 1392 48.2
C06p46750 Brassica napus HOM05D001849 ORTHO05D004075 2.6e-261 906.4 1414 47.5
BolC6t39719H Brassica oleracea HOM05D001849 ORTHO05D004075 1.3e-260 904.0 1416 47.3
BraA02t06845Z Brassica rapa HOM05D001849 ORTHO05D004075 1.0e-257 894.4 1383 47.4
BcaC03g15374 Brassica carinata HOM05D001849 ORTHO05D004075 3.0e-257 892.9 1379 46.7
C02p29880 Brassica napus HOM05D001849 ORTHO05D004075 3.0e-257 892.9 1379 46.7
BolC2t09038H Brassica oleracea HOM05D001849 ORTHO05D004075 2.0e-256 890.2 1371 47.5
A02p17980 Brassica napus HOM05D001849 ORTHO05D004075 2.6e-256 889.8 1375 47.5
Carub.0002s1924 Capsella rubella HOM05D001849 ORTHO05D004075 2.6e-256 889.8 1395 47.2
Aa31LG4G2730 Aethionema arabicum HOM05D001849 ORTHO05D004075 3.3e-256 889.4 1411 47.8
AUR62009923 Chenopodium quinoa HOM05D001849 ORTHO05D004075 4.5e-253 879.0 1341 45.3
HanXRQChr10g0311861 Helianthus annuus HOM05D001849 ORTHO05D004075 4.7e-250 869.0 1350 51.4
unitig_747.g21722 Utricularia gibba HOM05D001849 ORTHO05D004075 3.9e-249 865.9 1364 45.2
SGA_v2.0_scaffold71G23886 Striga asiatica HOM05D001849 ORTHO05D004075 1.1e-248 864.4 1391 49.2
ECA234G1749 Erigeron canadensis HOM05D001849 ORTHO05D004075 1.3e-247 860.9 1349 49.4
Sp5g27470 Schrenkiella parvula HOM05D001849 ORTHO05D004075 4.5e-245 852.4 1361 44.9
Ah.15g095140 Amaranthus hybridus HOM05D001849 ORTHO05D004075 1.0e-244 851.3 1364 46.8
BcaB05g24751 Brassica carinata HOM05D001849 ORTHO05D004075 6.3e-239 832.0 1284 45.1
TAR626G0481 Trochodendron aralioides HOM05D001849 ORTHO05D004075 2.4e-238 830.1 1070 55.1
HanXRQChr12g0360181 Helianthus annuus HOM05D001849 ORTHO05D004075 4.1e-238 829.3 1359 48.2
Oeu011098.1 Olea europaea HOM05D001849 ORTHO05D004075 1.9e-235 820.5 1294 45.1
ClCG09G001150 Citrullus lanatus HOM05D001849 ORTHO05D004075 1.2e-234 817.8 969 51.6
Atru.chr1.4088 Acer truncatum HOM05D001849 ORTHO05D004075 1.6e-226 790.8 789 58.9
Nitab4.5_0012739g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004075 1.2e-213 748.0 1108 48.3
AUR62001442 Chenopodium quinoa HOM05D001849 ORTHO05D004075 1.9e-211 740.7 1341 41.1
PSO386G0247 Papaver somniferum HOM05D001849 ORTHO05D004075 6.8e-201 705.7 1372 42.0
HPP92_011068 Vanilla planifolia HOM05D001849 ORTHO05D004075 2.6e-200 703.7 1374 42.6
MBI19_g29883_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 3.9e-196 689.9 916 48.1
Manes.11G016300 Manihot esculenta HOM05D001849 ORTHO05D004075 4.4e-192 676.4 1205 42.6
Medtr5g009590 Medicago truncatula HOM05D001849 ORTHO05D004075 3.5e-189 666.8 1001 44.4
Nitab4.5_0004322g0020 Nicotiana tabacum HOM05D001849 ORTHO05D004075 1.3e-175 621.7 787 49.9
BcaB03g14988 Brassica carinata HOM05D001849 ORTHO05D004075 1.8e-164 584.7 1208 39.0
CDE06G0789 Ceratophyllum demersum HOM05D001849 ORTHO05D004075 4.6e-157 560.1 1289 38.9
Haze_16065 Corylus avellana HOM05D001849 ORTHO05D004075 3.0e-156 557.4 546 61.0
PSO724G0283 Papaver somniferum HOM05D001849 ORTHO05D004075 1.1e-155 555.4 1241 39.5
QL05p003384 Quercus lobata HOM05D001849 ORTHO05D004075 2.2e-146 524.6 913 49.0
Zm00001eb203360 Zea mays HOM05D001849 ORTHO05D004075 6.5e-143 513.1 1355 37.9
TAR622G0522 Trochodendron aralioides HOM05D001849 ORTHO05D004075 7.2e-142 509.6 1365 36.2
Actinidia32207 Actinidia chinensis HOM05D001849 ORTHO05D004075 4.5e-136 490.3 308 83.4
ATR0681G273 Amborella trichopoda HOM05D001849 ORTHO05D004075 5.9e-136 490.0 1262 35.6
Nn3g17987 Nelumbo nucifera HOM05D001849 ORTHO05D004075 1.5e-118 432.2 1383 32.7
ECA247G2654 Erigeron canadensis HOM05D001849 ORTHO05D004075 5.5e-118 430.3 1443 31.8
Psat5g189840 Pisum sativum HOM05D001849 ORTHO05D004075 2.6e-99 368.2 412 52.4
MBI16_g25623_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 1.0e-95 356.3 1393 31.4
CDE07G1198 Ceratophyllum demersum HOM05D001849 ORTHO05D004075 2.1e-93 348.6 1204 32.5
Medtr8g106435 Medicago truncatula HOM05D001849 ORTHO05D004075 4.1e-89 334.3 496 45.2
QL01p003145 Quercus lobata HOM05D001849 ORTHO05D004075 1.1e-76 293.1 893 30.3
SEGI_32525 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 3.4e-75 288.1 1301 31.6
vmacro15055 Vaccinium macrocarpon HOM05D001849 ORTHO05D004075 3.5e-72 278.1 196 75.5
Actinidia14933 Actinidia chinensis HOM05D001849 ORTHO05D004075 1.0e-71 276.6 952 29.4
Psat5g189920 Pisum sativum HOM05D004963 ORTHO05D006638 1.3e-71 276.2 397 45.3
Dinv16157 Davidia involucrata HOM05D001849 ORTHO05D004075 2.1e-69 268.9 1085 28.4
Prupe.1G319400 Prunus persica HOM05D001849 ORTHO05D004075 9.6e-62 243.4 892 27.6
TAR626G0936 Trochodendron aralioides HOM05D001849 ORTHO05D004075 3.1e-60 238.4 208 64.9
SEGI_18725 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 1.5e-59 236.1 1122 28.9
Cfa015821 Carpinus fangiana HOM05D001849 ORTHO05D004075 3.8e-58 231.5 552 32.6
Lsat_1_v5_gn_1_37801 Lactuca sativa HOM05D001849 ORTHO05D004075 3.8e-58 231.5 913 28.7
Haze_16071 Corylus avellana HOM05D001849 ORTHO05D004075 4.9e-58 231.1 534 35.4
Rhsim09G0102300 Rhododendron simsii HOM05D001849 ORTHO05D004075 5.4e-57 227.6 361 41.6
Dinv04913 Davidia involucrata HOM05D001849 ORTHO05D004075 5.6e-54 217.6 852 27.5
SHI29651 Sapria himalayana HOM05D001849 ORTHO05D004075 8.1e-53 213.8 585 44.4
SHI29649 Sapria himalayana HOM05D001849 ORTHO05D004075 3.1e-52 211.8 444 38.5
Atru.chr11.324 Acer truncatum HOM05D001849 ORTHO05D004075 6.9e-52 210.7 428 37.4
Psat4g083360 Pisum sativum HOM05D001061 ORTHO05D006881 7.6e-51 207.2 214 56.5
CANSAT01G2891 Cannabis sativa HOM05D001849 ORTHO05D004075 2.2e-50 205.7 850 27.3
Haze_00674 Corylus avellana HOM05D001849 ORTHO05D004075 5.5e-49 201.1 557 31.4
CiPaw.05G244500 Carya illinoinensis HOM05D001849 ORTHO05D004075 4.3e-46 191.4 685 27.7
HanXRQChr04g0094421 Helianthus annuus HOM05D001849 ORTHO05D004075 1.6e-45 189.5 236 46.2
Lj6A751T55 Lonicera japonica HOM05D001849 ORTHO05D004075 5.8e-43 181.0 158 60.8
BcaC03g15372 Brassica carinata HOM05D001849 ORTHO05D004075 7.1e-41 174.1 778 27.1
Mapoly0055s0059 Marchantia polymorpha HOM05D001849 ORTHO05D004075 6.0e-40 171.0 993 24.7
CSS0014980 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 3.7e-37 161.8 659 27.2
Oeu011104.1 Olea europaea HOM05D001849 ORTHO05D004075 5.3e-36 157.9 205 67.8
Nitab4.5_0006425g0080 Nicotiana tabacum HOM05D001849 ORTHO05D004075 4.2e-33 148.3 359 40.9
Oeu013447.1 Olea europaea HOM05D001849 ORTHO05D004075 4.6e-32 144.8 212 52.8
Pp3c3_3510 Physcomitrium patens HOM05D001849 ORTHO05D004075 4.8e-29 134.8 1365 26.2
AagrBONN_evm.TU.Sc2ySwM_344.4287 Anthoceros agrestis HOM05D001849 ORTHO05D004075 9.1e-28 130.6 939 24.8
SHI29648 Sapria himalayana HOM05D001849 ORTHO05D004075 8.5e-26 124.0 151 49.7
Pp3c13_8340 Physcomitrium patens HOM05D001849 ORTHO05D004075 1.9e-25 122.9 1385 26.1
Manes.14G108850 Manihot esculenta HOM05D001849 ORTHO05D004075 2.5e-25 122.5 1075 23.7
CBR_g31688 Chara braunii HOM05D001849 ORTHO05D004075 9.7e-22 110.5 177 34.5
SHI29650 Sapria himalayana HOM05D001849 ORTHO05D004075 9.1e-20 104.0 125 42.4
vmacro10614 Vaccinium macrocarpon HOM05D001849 ORTHO05D004075 1.0e-18 100.5 88 54.5
BcaB03g14986 Brassica carinata HOM05D001849 ORTHO05D004075 1.7e-18 99.8 139 44.6
Cpa.g.sc25.149 Carica papaya HOM05D020865 ORTHO05D004075 3.2e-17 95.5 131 50.4
Medtr8g106415 Medicago truncatula HOM05D001849 ORTHO05D004075 5.5e-17 94.7 90 53.3
MBI19_g29884_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 1.7e-13 83.2 268 36.2
MCO11G122 Micromonas commoda HOM05D001849 ORTHO05D004075 1.8e-12 79.7 86 45.3
Atru.chr11.323 Acer truncatum HOM05D001849 ORTHO05D004075 9.1e-12 77.4 485 25.8
Manes.06G063600 Manihot esculenta HOM05D001849 ORTHO05D004075 3.8e-10 72.0 77 48.1
Os10g0391100 Oryza sativa ssp. japonica HOM05D001849 ORTHO05D004075 9.4e-09 67.4 251 34.7


User provided reference genes

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