Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012805 Camellia sinensis var. sinensis HOM05D005984 ORTHO05D007754 2.3e-240 835.1 410 100.0
Actinidia38413 Actinidia chinensis HOM05D005984 ORTHO05D007754 7.8e-196 687.2 412 82.3
Actinidia13710 Actinidia chinensis HOM05D005984 ORTHO05D007754 2.5e-194 682.2 416 81.5
Hma1.2p1_0122F.1_g057600 Hydrangea macrophylla HOM05D005984 ORTHO05D007754 6.2e-193 677.6 419 81.1
Cpa.g.sc44.38 Carica papaya HOM05D005984 ORTHO05D007754 4.0e-192 674.9 408 82.6
TAR629G1998 Trochodendron aralioides HOM05D005984 ORTHO05D007754 7.5e-191 670.6 411 82.5
GSVIVG01012045001 Vitis vinifera HOM05D005984 ORTHO05D007754 5.1e-187 657.9 413 80.6
Thecc.02G160200 Theobroma cacao HOM05D005984 ORTHO05D007754 2.5e-186 655.6 423 78.7
CiPaw.06G060100 Carya illinoinensis HOM05D005984 ORTHO05D007754 4.3e-186 654.8 425 77.9
CsaV3_7G030600 Cucumis sativus L. HOM05D005984 ORTHO05D007754 1.2e-185 653.3 403 80.9
MD13G1005900 Malus domestica HOM05D005984 ORTHO05D007754 1.2e-185 653.3 414 79.5
arahy.Tifrunner.gnm1.ann1.0C6YUW Arachis hypogaea HOM05D005984 ORTHO05D007754 1.6e-185 652.9 435 76.1
Aqoxy3G04258 Aquilegia oxysepala HOM05D005984 ORTHO05D007754 2.1e-185 652.5 431 77.5
arahy.Tifrunner.gnm1.ann1.B6F48P Arachis hypogaea HOM05D005984 ORTHO05D007754 6.2e-185 651.0 435 76.1
Dinv11718 Davidia involucrata HOM05D005984 ORTHO05D007754 1.4e-184 649.8 412 79.9
Gorai.005G210500 Gossypium raimondii HOM05D005984 ORTHO05D007754 4.0e-184 648.3 423 78.0
Cfa008738 Carpinus fangiana HOM05D005984 ORTHO05D007754 6.8e-184 647.5 414 78.0
Gohir.D02G187800 Gossypium hirsutum HOM05D005984 ORTHO05D007754 6.8e-184 647.5 423 77.8
Gohir.A03G164600 Gossypium hirsutum HOM05D005984 ORTHO05D007754 8.9e-184 647.1 419 78.0
ClCG09G004540 Citrullus lanatus HOM05D005984 ORTHO05D007754 1.2e-183 646.7 355 87.3
Potri.007G071300 Populus trichocarpa HOM05D005984 ORTHO05D007754 1.2e-183 646.7 385 82.3
PSO063G6567 Papaver somniferum HOM05D005984 ORTHO05D007754 1.5e-183 646.4 419 77.8
PSO782G0234 Papaver somniferum HOM05D005984 ORTHO05D007754 2.0e-183 646.0 418 78.0
Glyma.11G100800 Glycine max HOM05D005984 ORTHO05D007754 5.8e-183 644.4 395 81.0
Glyma.12G026900 Glycine max HOM05D005984 ORTHO05D007754 7.6e-183 644.0 395 81.0
ATR0618G114 Amborella trichopoda HOM05D005984 ORTHO05D007754 1.7e-182 642.9 365 85.5
Lj3A850G95 Lonicera japonica HOM05D005984 ORTHO05D007754 1.7e-182 642.9 431 74.7
TPR.G32343 Trifolium pratense HOM05D005984 ORTHO05D007754 4.9e-182 641.3 372 83.6
Duzib052G0297 Durio zibethinus HOM05D005984 ORTHO05D007754 8.4e-182 640.6 427 75.9
Sabra07G0060100 Salix brachista HOM05D005984 ORTHO05D007754 1.9e-181 639.4 385 81.3
VMungo1127G1047 Vigna mungo HOM05D005984 ORTHO05D007754 2.4e-181 639.0 356 86.0
Sed0006813 Sechium edule HOM05D005984 ORTHO05D007754 5.4e-181 637.9 367 83.4
TWI53G1952 Tripterygium wilfordii HOM05D005984 ORTHO05D007754 5.4e-181 637.9 394 81.0
VMungo0647G2306 Vigna mungo HOM05D005984 ORTHO05D007754 7.1e-181 637.5 356 86.0
Phvul.011G029800 Phaseolus vulgaris HOM05D005984 ORTHO05D007754 9.2e-181 637.1 356 85.4
Haze_11755 Corylus avellana HOM05D005984 ORTHO05D007754 2.7e-180 635.6 426 76.1
Nn3g18651 Nelumbo nucifera HOM05D005984 ORTHO05D007754 6.0e-180 634.4 392 81.9
PGR044G2022 Punica granatum HOM05D005984 ORTHO05D007754 6.0e-180 634.4 359 85.5
THA.LOC104800911 Tarenaya hassleriana HOM05D005984 ORTHO05D007754 7.8e-180 634.0 355 85.6
Ca_19021_v3 Cicer arietinum L. HOM05D005984 ORTHO05D007754 3.9e-179 631.7 394 79.2
Medtr4g075040 Medicago truncatula HOM05D005984 ORTHO05D007754 1.5e-178 629.8 364 83.5
DCAR_002576 Daucus carota HOM05D005984 ORTHO05D007754 3.3e-178 628.6 411 77.6
COL.COLO4_19602 Corchorus olitorius HOM05D005984 ORTHO05D007754 4.3e-178 628.2 463 71.3
Psat7g177360 Pisum sativum HOM05D005984 ORTHO05D007754 5.6e-178 627.9 372 81.2
Rhsim04G0167300 Rhododendron simsii HOM05D005984 ORTHO05D007754 1.3e-177 626.7 425 75.5
Zm00001eb271820 Zea mays HOM05D005984 ORTHO05D007754 1.3e-177 626.7 378 81.0
PGSC0003DMG400002324 Solanum tuberosum HOM05D005984 ORTHO05D007754 2.1e-177 625.9 360 83.9
Os06g0729650 Oryza sativa ssp. japonica HOM05D005984 ORTHO05D007754 3.6e-177 625.2 371 81.7
vmacro08597 Vaccinium macrocarpon HOM05D005984 ORTHO05D007754 1.8e-176 622.9 421 77.2
BolC7t44963H Brassica oleracea HOM05D005984 ORTHO05D007754 2.4e-176 622.5 356 83.1
Sopen02g003530 Solanum pennellii HOM05D005984 ORTHO05D007754 4.0e-176 621.7 409 76.0
MSTRG.431 Avicennia marina HOM05D005984 ORTHO05D007754 5.3e-176 621.3 386 80.3
Thhalv10004338m.g Eutrema salsugineum HOM05D005984 ORTHO05D007754 5.3e-176 621.3 392 76.8
HPP92_012878 Vanilla planifolia HOM05D005984 ORTHO05D007754 5.3e-176 621.3 356 84.8
A03p46390 Brassica napus HOM05D005984 ORTHO05D007754 6.9e-176 620.9 356 82.9
C07p44410 Brassica napus HOM05D005984 ORTHO05D007754 6.9e-176 620.9 356 82.9
BraA03t13765Z Brassica rapa HOM05D005984 ORTHO05D007754 6.9e-176 620.9 356 82.9
CAN.G157.24 Capsicum annuum HOM05D005984 ORTHO05D007754 1.5e-175 619.8 407 77.1
Carub.0006s2091 Capsella rubella HOM05D005984 ORTHO05D007754 5.8e-175 617.8 356 81.7
Prupe.1G347100 Prunus persica HOM05D005984 ORTHO05D007754 5.8e-175 617.8 415 76.6
Hund08579 Selenicereus undatus HOM05D005984 ORTHO05D007754 2.2e-174 615.9 421 74.3
FAN12G1392 Fragaria x ananassa HOM05D005984 ORTHO05D007754 2.9e-174 615.5 410 76.6
Cc11_g02280 Coffea canephora HOM05D005984 ORTHO05D007754 3.8e-174 615.1 393 77.1
Ciclev10031672m.g Citrus clementina HOM05D005984 ORTHO05D007754 8.4e-174 614.0 409 75.8
MELO3C023596.2 Cucumis melo HOM05D005984 ORTHO05D007754 8.4e-174 614.0 371 80.3
RcHm_v2.0_Chr4g0446671 Rosa chinensis HOM05D005984 ORTHO05D007754 8.4e-174 614.0 412 76.5
AT5G23120 Arabidopsis thaliana HOM05D005984 ORTHO05D007754 5.4e-173 611.3 394 75.9
FvH4_4g36890 Fragaria vesca HOM05D005984 ORTHO05D007754 5.4e-173 611.3 411 76.4
CDE07G0658 Ceratophyllum demersum HOM05D005984 ORTHO05D007754 7.1e-173 610.9 412 76.5
MD16G1002000 Malus domestica HOM05D005984 ORTHO05D007754 3.5e-172 608.6 410 75.6
Manes.11G108100 Manihot esculenta HOM05D005984 ORTHO05D007754 3.5e-172 608.6 369 82.1
EL10Ac9g22946 Beta vulgaris HOM05D005984 ORTHO05D007754 1.0e-171 607.1 412 73.8
Manes.04G064200 Manihot esculenta HOM05D005984 ORTHO05D007754 6.6e-171 604.4 390 77.7
Sed0023953 Sechium edule HOM05D005984 ORTHO05D007754 1.9e-170 602.8 382 78.0
CANSAT56G2432 Cannabis sativa HOM05D005984 ORTHO05D007754 9.6e-170 600.5 394 75.4
Lsat_1_v5_gn_3_35480 Lactuca sativa HOM05D005984 ORTHO05D007754 1.6e-169 599.7 419 71.6
QL03p045967 Quercus lobata HOM05D005984 ORTHO05D007754 4.8e-169 598.2 455 68.1
unitig_8.g2892 Utricularia gibba HOM05D005984 ORTHO05D007754 6.2e-169 597.8 355 80.6
AUR62017696 Chenopodium quinoa HOM05D005984 ORTHO05D007754 1.1e-168 597.0 355 82.0
FAN07G1379 Fragaria x ananassa HOM05D005984 ORTHO05D007754 2.4e-168 595.9 427 72.4
Lj3g0024041 Lotus japonicus HOM05D005984 ORTHO05D007754 9.0e-168 594.0 394 76.1
ECA246G1868 Erigeron canadensis HOM05D005984 ORTHO05D007754 2.0e-167 592.8 357 79.6
Atru.chr11.1117 Acer truncatum HOM05D005984 ORTHO05D007754 2.6e-167 592.4 383 77.5
Lalb_Chr03g0024761 Lupinus albus HOM05D005984 ORTHO05D007754 1.7e-166 589.7 410 73.7
Sp2g24000 Schrenkiella parvula HOM05D005984 ORTHO05D007754 8.4e-166 587.4 356 79.8
Eucgr.J00865 Eucalyptus grandis HOM05D005984 ORTHO05D007754 1.9e-165 586.3 354 81.4
AL6G34310 Arabidopsis lyrata HOM05D005984 ORTHO05D007754 7.1e-165 584.3 356 78.9
CARHR190410 Cardamine hirsuta HOM05D005984 ORTHO05D007754 1.6e-164 583.2 356 78.9
Solyc02g014150.4 Solanum lycopersicum HOM05D005984 ORTHO05D007754 1.6e-164 583.2 386 75.6
Sc10g0006780 Simmondsia chinensis HOM05D005984 ORTHO05D007754 3.9e-163 578.6 389 76.3
AUR62015232 Chenopodium quinoa HOM05D005984 ORTHO05D007754 8.7e-163 577.4 327 84.7
AUR62015234 Chenopodium quinoa HOM05D005984 ORTHO05D007754 8.7e-163 577.4 327 84.7
Aa31LG11G2610 Aethionema arabicum HOM05D005984 ORTHO05D007754 1.1e-162 577.0 356 77.5
Migut.E00699 Erythranthe guttata HOM05D005984 ORTHO05D007754 1.5e-162 576.6 399 73.4
SGA_v2.0_scaffold88G27230 Striga asiatica HOM05D005984 ORTHO05D007754 4.8e-161 571.6 374 75.4
SMO347G0352 Selaginella moellendorffii HOM05D005984 ORTHO05D007754 5.3e-160 568.2 331 79.2
Oeu026903.3 Olea europaea HOM05D005984 ORTHO05D007754 7.6e-159 564.3 436 67.7
Ah.01g001560 Amaranthus hybridus HOM05D005984 ORTHO05D007754 1.4e-157 560.1 432 68.1
HanXRQChr17g0544921 Helianthus annuus HOM05D005984 ORTHO05D007754 4.2e-157 558.5 388 72.4
HanXRQChr06g0171511 Helianthus annuus HOM05D005984 ORTHO05D007754 3.3e-154 548.9 332 80.1
Mapoly0020s0149 Marchantia polymorpha HOM05D005984 ORTHO05D007754 5.3e-152 541.6 355 71.5
SalBow2G1456 Salvia bowleyana HOM05D005984 ORTHO05D007754 1.3e-150 537.0 476 60.5
Pp3c15_7930 Physcomitrium patens HOM05D005984 ORTHO05D007754 5.5e-149 531.6 352 73.3
Nitab4.5_0000133g0050 Nicotiana tabacum HOM05D005984 ORTHO05D007754 1.9e-146 523.1 553 54.2
Pp3c9_10350 Physcomitrium patens HOM05D005984 ORTHO05D007754 2.8e-145 519.2 379 69.4
Nitab4.5_0006277g0020 Nicotiana tabacum HOM05D005984 ORTHO05D007754 2.0e-143 513.1 566 52.8
CDE04G0799 Ceratophyllum demersum HOM05D005984 ORTHO05D007754 7.7e-143 511.1 368 71.2
Peaxi162Scf00363g00317 Petunia axillaris HOM05D005984 ORTHO05D007754 1.1e-133 480.7 483 54.9
FAN17G0887 Fragaria x ananassa HOM05D005984 ORTHO05D007754 6.1e-124 448.4 437 58.4
CBR_g11122 Chara braunii HOM05D005984 ORTHO05D007754 2.2e-121 439.9 356 61.2
AagrBONN_evm.TU.Sc2ySwM_369.365 Anthoceros agrestis HOM05D005984 ORTHO05D007754 5.3e-120 435.3 358 63.1
Hma1.2p1_0122F.1_g057590 Hydrangea macrophylla HOM05D005984 ORTHO05D007754 1.6e-111 407.1 209 91.4
MCO05G498 Micromonas commoda HOM05D005984 ORTHO05D007754 5.0e-110 402.1 333 57.7
Cre06.g273700 Chlamydomonas reinhardtii HOM05D005984 ORTHO05D007754 3.6e-108 396.0 359 56.8
Dinv01185 Davidia involucrata HOM05D005984 ORTHO05D007754 1.0e-107 394.4 203 93.1
PRCOL_00000217 Prasinoderma coloniale HOM05D005984 ORTHO05D007754 2.3e-78 297.0 298 49.3
AagrBONN_evm.TU.Sc2ySwM_368.563 Anthoceros agrestis HOM05D001974 ORTHO05D001995 2.8e-60 236.9 378 36.8
MD15G1106700 Malus domestica HOM05D005984 ORTHO05D007754 1.7e-57 227.6 114 93.0
SEGI_34707 Sequoiadendron giganteum HOM05D005984 ORTHO05D007754 2.2e-57 227.3 122 85.2
C09p07860 Brassica napus HOM05D005984 ORTHO05D007754 1.1e-48 198.4 181 60.2
MD00G1043400 Malus domestica HOM05D005984 ORTHO05D007754 2.0e-42 177.6 111 79.3
BcaB04g19886 Brassica carinata HOM05D005984 ORTHO05D007754 2.5e-40 170.6 211 49.8
C09p07870 Brassica napus HOM05D005984 ORTHO05D042888 6.1e-31 139.4 98 67.3
HanXRQChr10g0318441 Helianthus annuus HOM05D005984 ORTHO05D007754 2.5e-29 134.0 69 87.0
AUR62024854 Chenopodium quinoa HOM05D005984 ORTHO05D007754 4.8e-28 129.8 73 87.7
arahy.Tifrunner.gnm1.ann1.25R2K9 Arachis hypogaea HOM05D005984 ORTHO05D014444 5.9e-26 122.9 85 70.6
arahy.Tifrunner.gnm1.ann1.B9R6EW Arachis hypogaea HOM05D005984 ORTHO05D014444 8.5e-25 119.0 84 69.0
BolC9t53702H Brassica oleracea HOM05D005984 ORTHO05D042888 9.7e-21 105.5 80 63.8
SEGI_27749 Sequoiadendron giganteum HOM05D005984 ORTHO05D007754 2.0e-18 97.8 53 84.9
MBI03_g15323_MAGBIO Magnolia biondii HOM05D002934 ORTHO05D003937 6.1e-15 86.3 43 88.4
Zm00001eb227280 Zea mays HOM05D005984 ORTHO05D007754 8.2e-12 75.9 62 59.7
Glyma.01G000174 Glycine max HOM05D036214 ORTHO05D007754 4.1e-11 73.6 43 81.4
Glyma.06G237300 Glycine max HOM05D005984 ORTHO05D007754 1.7e-09 68.2 71 54.9
Pp3c24_8290 Physcomitrium patens HOM05D013586 ORTHO05D011470 1.7e-09 68.2 38 76.3
SGA_v2.0_scaffold57G20111 Striga asiatica HOM05D005984 ORTHO05D402503 9.4e-08 62.4 39 69.2
AUR62043071 Chenopodium quinoa HOM05D003339 ORTHO05D003847 2.1e-07 61.2 55 60.0


User provided reference genes

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