Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011852 Camellia sinensis var. sinensis HOM05D006077 ORTHO05D007499 1.4e-47 192.6 95 100.0
TAR636G2213 Trochodendron aralioides HOM05D006077 ORTHO05D007499 6.9e-47 190.3 95 97.9
Actinidia26028 Actinidia chinensis HOM05D006077 ORTHO05D007499 2.6e-46 188.3 95 97.9
Dinv37869 Davidia involucrata HOM05D006077 ORTHO05D007499 1.0e-45 186.4 95 96.8
Gohir.D04G009800 Gossypium hirsutum HOM05D006077 ORTHO05D007499 1.3e-45 186.0 95 95.8
Gorai.012G011600 Gossypium raimondii HOM05D006077 ORTHO05D007499 1.3e-45 186.0 95 95.8
GSVIVG01016766001 Vitis vinifera HOM05D006077 ORTHO05D007499 1.3e-45 186.0 95 95.8
Glyma.16G007300 Glycine max HOM05D006077 ORTHO05D007499 2.2e-45 185.3 95 93.7
Lalb_Chr01g0013591 Lupinus albus HOM05D006077 ORTHO05D007499 2.9e-45 184.9 95 94.7
Phvul.010G130300 Phaseolus vulgaris HOM05D006077 ORTHO05D007499 6.5e-45 183.7 95 92.6
Thecc.06G119600 Theobroma cacao HOM05D006077 ORTHO05D007499 6.5e-45 183.7 95 93.7
Gohir.A05G405800 Gossypium hirsutum HOM05D006077 ORTHO05D007499 8.5e-45 183.3 95 93.7
PSO421G0038 Papaver somniferum HOM05D006077 ORTHO05D007499 8.5e-45 183.3 95 93.7
Psat4g182400 Pisum sativum HOM05D006077 ORTHO05D007499 8.5e-45 183.3 95 92.6
Glyma.07G038100 Glycine max HOM05D006077 ORTHO05D007499 1.1e-44 183.0 95 93.7
Aqoxy7G01092 Aquilegia oxysepala HOM05D006077 ORTHO05D007499 1.4e-44 182.6 95 93.7
Lj3g0010947 Lotus japonicus HOM05D006077 ORTHO05D007499 1.4e-44 182.6 95 91.6
TPR.G32491 Trifolium pratense HOM05D006077 ORTHO05D007499 1.4e-44 182.6 95 91.6
VMungo0331G1077 Vigna mungo HOM05D006077 ORTHO05D007499 1.4e-44 182.6 95 92.6
ATR0598G320 Amborella trichopoda HOM05D006077 ORTHO05D007499 2.5e-44 181.8 95 92.6
arahy.Tifrunner.gnm1.ann1.G5XP6S Arachis hypogaea HOM05D006077 ORTHO05D007499 2.5e-44 181.8 95 92.6
arahy.Tifrunner.gnm1.ann1.G7AU8E Arachis hypogaea HOM05D006077 ORTHO05D007499 2.5e-44 181.8 95 92.6
Haze_16030 Corylus avellana HOM05D006077 ORTHO05D007499 2.5e-44 181.8 95 93.7
Rhsim08G0238900 Rhododendron simsii HOM05D006077 ORTHO05D007499 3.2e-44 181.4 95 93.7
Sc15g0000510 Simmondsia chinensis HOM05D006077 ORTHO05D007499 4.2e-44 181.0 95 91.6
CiPaw.02G136000 Carya illinoinensis HOM05D006077 ORTHO05D007499 7.2e-44 180.3 93 93.5
PSO063G4040 Papaver somniferum HOM05D006077 ORTHO05D007499 9.4e-44 179.9 95 92.6
TWI75G1673 Tripterygium wilfordii HOM05D006077 ORTHO05D007499 9.4e-44 179.9 95 91.6
CDE11G1182 Ceratophyllum demersum HOM05D006077 ORTHO05D007499 1.6e-43 179.1 91 91.2
Prupe.3G042200 Prunus persica HOM05D006077 ORTHO05D007499 2.1e-43 178.7 92 93.5
FvH4_6g34660 Fragaria vesca HOM05D006077 ORTHO05D007499 2.7e-43 178.3 94 89.4
FAN14G4463 Fragaria x ananassa HOM05D006077 ORTHO05D007499 2.7e-43 178.3 94 89.4
RcHm_v2.0_Chr2g0145211 Rosa chinensis HOM05D006077 ORTHO05D007499 2.7e-43 178.3 93 90.3
TWI79G1574 Tripterygium wilfordii HOM05D006077 ORTHO05D007499 2.7e-43 178.3 95 91.6
Hund05739 Selenicereus undatus HOM05D006077 ORTHO05D007499 7.9e-43 176.8 95 89.5
Hma1.2p1_0291F.1_g115130 Hydrangea macrophylla HOM05D006077 ORTHO05D007499 1.4e-42 176.0 96 90.6
ECA232G1087 Erigeron canadensis HOM05D006077 ORTHO05D007499 1.8e-42 175.6 94 89.4
Eucgr.F03177 Eucalyptus grandis HOM05D006077 ORTHO05D007499 1.8e-42 175.6 95 89.5
FAN09G3570 Fragaria x ananassa HOM05D006077 ORTHO05D007499 1.8e-42 175.6 94 89.4
CiPaw.01G218900 Carya illinoinensis HOM05D006077 ORTHO05D007499 2.3e-42 175.3 94 92.6
MD09G1183900 Malus domestica HOM05D006077 ORTHO05D007499 2.3e-42 175.3 93 89.2
CANSAT64G0122 Cannabis sativa HOM05D006077 ORTHO05D007499 3.0e-42 174.9 92 90.2
CANSAT64G2602 Cannabis sativa HOM05D006077 ORTHO05D007499 3.0e-42 174.9 92 90.2
Carub.0001s4344 Capsella rubella HOM05D006077 ORTHO05D007499 3.0e-42 174.9 95 89.5
Lsat_1_v5_gn_4_92920 Lactuca sativa HOM05D006077 ORTHO05D007499 3.9e-42 174.5 95 89.5
Solyc12g049310.2 Solanum lycopersicum HOM05D006077 ORTHO05D007499 5.1e-42 174.1 89 93.3
Sopen12g023790 Solanum pennellii HOM05D006077 ORTHO05D007499 5.1e-42 174.1 89 93.3
Migut.D00939 Erythranthe guttata HOM05D006077 ORTHO05D007499 8.8e-42 173.3 89 94.4
Peaxi162Scf00177g00511 Petunia axillaris HOM05D006077 ORTHO05D007499 1.5e-41 172.6 89 93.3
THA.LOC104822655 Tarenaya hassleriana HOM05D006077 ORTHO05D007499 2.0e-41 172.2 95 89.5
Ah.08g216780 Amaranthus hybridus HOM05D006077 ORTHO05D007499 2.6e-41 171.8 95 85.3
CAN.G1368.2 Capsicum annuum HOM05D006077 ORTHO05D007499 2.6e-41 171.8 87 94.3
AT1G54210 Arabidopsis thaliana HOM05D006077 ORTHO05D007499 4.4e-41 171.0 93 89.2
AL3G26170 Arabidopsis lyrata HOM05D006077 ORTHO05D007499 5.7e-41 170.6 95 86.3
RcHm_v2.0_Chr5g0053491 Rosa chinensis HOM05D006077 ORTHO05D007499 5.7e-41 170.6 93 88.2
CARHR044580 Cardamine hirsuta HOM05D006077 ORTHO05D007499 7.4e-41 170.2 95 88.4
BcaB06g25414 Brassica carinata HOM05D006077 ORTHO05D007499 9.7e-41 169.9 95 86.3
Sp3g12220 Schrenkiella parvula HOM05D006077 ORTHO05D007499 9.7e-41 169.9 95 85.3
Medtr8g020500 Medicago truncatula HOM05D006077 ORTHO05D007499 1.3e-40 169.5 84 96.4
BcaC05g29136 Brassica carinata HOM05D006077 ORTHO05D007499 1.7e-40 169.1 95 86.3
C05p53730 Brassica napus HOM05D006077 ORTHO05D007499 1.7e-40 169.1 95 86.3
Manes.11G020500 Manihot esculenta HOM05D006077 ORTHO05D007499 1.7e-40 169.1 94 86.2
BcaB07g33246 Brassica carinata HOM05D006077 ORTHO05D007499 3.7e-40 167.9 95 87.4
Thhalv10011896m.g Eutrema salsugineum HOM05D006077 ORTHO05D007499 3.7e-40 167.9 95 87.4
AL1G62920 Arabidopsis lyrata HOM05D006077 ORTHO05D007499 4.8e-40 167.5 95 86.3
Hma1.2p1_0496F.1_g166240 Hydrangea macrophylla HOM05D006077 ORTHO05D007499 4.8e-40 167.5 83 95.2
Ciclev10026605m.g Citrus clementina HOM05D006077 ORTHO05D007499 6.3e-40 167.2 94 86.2
SalBow6G4082 Salvia bowleyana HOM05D006077 ORTHO05D007499 8.2e-40 166.8 89 89.9
SalBow6G4389 Salvia bowleyana HOM05D006077 ORTHO05D007499 8.2e-40 166.8 89 89.9
BolC5t34043H Brassica oleracea HOM05D006077 ORTHO05D007499 1.4e-39 166.0 93 86.0
RcHm_v2.0_Chr3g0490611 Rosa chinensis HOM05D006077 ORTHO05D007499 4.1e-39 164.5 93 83.9
Carub.0003s1355 Capsella rubella HOM05D006077 ORTHO05D007499 6.9e-39 163.7 92 84.8
Cc00_g21000 Coffea canephora HOM05D006077 ORTHO05D007499 6.9e-39 163.7 89 87.6
Nn4g24846 Nelumbo nucifera HOM05D006077 ORTHO05D007499 4.5e-38 161.0 86 91.9
A05p35440 Brassica napus HOM05D006077 ORTHO05D007499 7.7e-38 160.2 95 82.1
Potri.001G169700 Populus trichocarpa HOM05D006077 ORTHO05D007499 7.7e-38 160.2 95 78.9
FAN05G2137 Fragaria x ananassa HOM05D006077 ORTHO05D007499 1.0e-37 159.8 120 69.2
Potri.003G064300 Populus trichocarpa HOM05D006077 ORTHO05D007499 1.3e-37 159.5 95 81.1
SalBow6G7202 Salvia bowleyana HOM05D006077 ORTHO05D007499 1.7e-37 159.1 93 86.0
Sed0008411 Sechium edule HOM05D006077 ORTHO05D007499 2.2e-37 158.7 94 80.9
A06p00460 Brassica napus HOM05D006077 ORTHO05D007499 5.0e-37 157.5 101 80.2
ClCG07G014030 Citrullus lanatus HOM05D006077 ORTHO05D007499 1.9e-36 155.6 94 79.8
CsaV3_3G043520 Cucumis sativus L. HOM05D006077 ORTHO05D007499 1.9e-36 155.6 94 79.8
BolC6t36071H Brassica oleracea HOM05D006077 ORTHO05D007499 3.2e-36 154.8 93 83.9
BraA06t23260Z Brassica rapa HOM05D006077 ORTHO05D007499 3.2e-36 154.8 93 83.9
Mapoly0025s0134 Marchantia polymorpha HOM05D006077 ORTHO05D007499 3.2e-36 154.8 89 82.0
Aa31LG8G1170 Aethionema arabicum HOM05D006077 ORTHO05D007499 4.2e-36 154.5 103 75.7
MELO3C025809.2 Cucumis melo HOM05D006077 ORTHO05D007499 4.2e-36 154.5 94 78.7
BraA05t22354Z Brassica rapa HOM05D006077 ORTHO05D007499 7.2e-36 153.7 84 88.1
Pp3c4_29920 Physcomitrium patens HOM05D006077 ORTHO05D007499 7.2e-36 153.7 96 77.1
Zm00001eb256700 Zea mays HOM05D006077 ORTHO05D007499 1.6e-35 152.5 95 77.9
BcaB07g33245 Brassica carinata HOM05D006077 ORTHO05D007499 2.1e-35 152.1 84 88.1
BcaC08g43600 Brassica carinata HOM05D006077 ORTHO05D007499 2.1e-35 152.1 84 88.1
C06p09980 Brassica napus HOM05D006077 ORTHO05D007499 2.1e-35 152.1 84 88.1
AagrBONN_evm.TU.Sc2ySwM_228.485 Anthoceros agrestis HOM05D006077 ORTHO05D007499 1.8e-34 149.1 85 81.2
vmacro15032 Vaccinium macrocarpon HOM05D006077 ORTHO05D007499 1.5e-33 146.0 79 94.9
Sed0025034 Sechium edule HOM05D006077 ORTHO05D007499 2.0e-33 145.6 94 75.5
Os06g0205000 Oryza sativa ssp. japonica HOM05D006077 ORTHO05D007499 2.6e-33 145.2 86 75.6
COL.COLO4_30761 Corchorus olitorius HOM05D006077 ORTHO05D007499 8.2e-32 140.2 78 91.0
unitig_699.g19648 Utricularia gibba HOM05D002868 ORTHO05D003477 8.2e-32 140.2 78 85.9
Duzib235G0120 Durio zibethinus HOM05D006077 ORTHO05D007499 1.1e-31 139.8 74 93.2
Manes.04G144301 Manihot esculenta HOM05D006077 ORTHO05D007499 5.3e-31 137.5 81 80.2
EL10Ac7g16407 Beta vulgaris HOM05D006077 ORTHO05D007499 3.5e-30 134.8 74 86.5
Duzib192G0164 Durio zibethinus HOM05D006077 ORTHO05D007499 3.5e-30 134.8 74 89.2
QL05p007703 Quercus lobata HOM05D006077 ORTHO05D007499 5.9e-30 134.0 204 42.6
CANSAT25G1718 Cannabis sativa HOM05D006077 ORTHO05D007499 5.0e-29 131.0 71 88.7
SGA_v2.0_scaffold4G02063 Striga asiatica HOM05D006077 ORTHO05D007499 1.5e-28 129.4 83 77.1
Oeu015484.1 Olea europaea HOM05D006077 ORTHO05D007499 5.5e-28 127.5 68 92.6
FAN02G4125 Fragaria x ananassa HOM05D006077 ORTHO05D007499 2.7e-27 125.2 97 68.0
CARHR088790 Cardamine hirsuta HOM05D006077 ORTHO05D007499 4.7e-27 124.4 74 81.1
Sabra03G0038000 Salix brachista HOM05D006077 ORTHO05D007499 5.2e-26 120.9 74 79.7
Thhalv10021863m.g Eutrema salsugineum HOM05D006077 ORTHO05D007499 6.7e-26 120.6 95 67.4
RcHm_v2.0_Chr5g0040601 Rosa chinensis HOM05D006077 ORTHO05D007499 6.7e-26 120.6 71 78.9
Nitab4.5_0000189g0210 Nicotiana tabacum HOM05D006077 ORTHO05D007499 1.5e-25 119.4 93 67.7
Nitab4.5_0001199g0100 Nicotiana tabacum HOM05D006077 ORTHO05D007499 2.0e-25 119.0 89 69.7
CBR_g34185 Chara braunii HOM05D000019 ORTHO05D001702 2.6e-25 118.6 73 76.7
AUR62009882 Chenopodium quinoa HOM05D006077 ORTHO05D007499 2.6e-25 118.6 71 76.1
HPP92_019155 Vanilla planifolia HOM05D006077 ORTHO05D007499 2.6e-25 118.6 74 79.7
SMO364G0450 Selaginella moellendorffii HOM05D006077 ORTHO05D007499 1.9e-20 102.4 86 55.8
CSS0028385 Camellia sinensis var. sinensis HOM05D006077 ORTHO05D007499 2.5e-20 102.1 54 96.3
MCO16G375 Micromonas commoda HOM05D006077 ORTHO05D007499 7.2e-20 100.5 90 58.9
PRCOL_00003774 Prasinoderma coloniale HOM05D006077 ORTHO05D007499 2.7e-19 98.6 85 52.9
CDE05G1235 Ceratophyllum demersum HOM05D006077 ORTHO05D007499 1.5e-17 92.8 60 80.0
PGSC0003DMG400011604 Solanum tuberosum HOM05D006077 ORTHO05D007499 2.6e-17 92.0 45 91.1
AT3G13970 Arabidopsis thaliana HOM05D006077 ORTHO05D007499 8.3e-16 87.0 56 71.4
DCAR_022696 Daucus carota HOM05D006077 ORTHO05D007499 9.1e-15 83.6 48 83.3
Atru.chr1.3943 Acer truncatum HOM05D006077 ORTHO05D007499 3.5e-14 81.6 78 61.5
Cre12.g557000 Chlamydomonas reinhardtii HOM05D006077 ORTHO05D007499 5.9e-14 80.9 85 47.1
Aa31LG10G1230 Aethionema arabicum HOM05D006077 ORTHO05D007499 1.1e-07 60.1 99 40.4
Aa31sc1971G10 Aethionema arabicum HOM05D006077 ORTHO05D007499 1.4e-07 59.7 99 40.4
FAN24G1797 Fragaria x ananassa HOM05D006077 ORTHO05D007499 3.1e-07 58.5 36 75.0


User provided reference genes

Program Settings