Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011446 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 1.0e-82 310.1 162 100.0
CSS0049273 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 1.0e-66 256.9 162 85.2
CSS0021073 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 6.5e-61 237.7 137 90.5
CSS0028808 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 5.5e-60 234.6 162 80.9
Rhsim01G0189100 Rhododendron simsii HOM05D004569 ORTHO05D005333 1.5e-46 189.9 143 69.9
Dinv07545 Davidia involucrata HOM05D004569 ORTHO05D005333 1.4e-44 183.3 145 65.5
vmacro17995 Vaccinium macrocarpon HOM05D004569 ORTHO05D005333 3.0e-42 175.6 145 64.1
Rhsim04G0197700 Rhododendron simsii HOM05D004569 ORTHO05D005333 8.8e-42 174.1 143 67.1
Thecc.04G238000 Theobroma cacao HOM05D004569 ORTHO05D005333 8.8e-42 174.1 140 62.9
Duzib052G0452 Durio zibethinus HOM05D004569 ORTHO05D005333 1.1e-41 173.7 135 64.4
TAR365G0299 Trochodendron aralioides HOM05D004569 ORTHO05D005333 1.1e-41 173.7 140 63.6
Gohir.A02G034100 Gossypium hirsutum HOM05D004569 ORTHO05D005333 2.5e-41 172.6 140 62.9
Peaxi162Scf00192g01617 Petunia axillaris HOM05D004569 ORTHO05D005333 4.3e-41 171.8 144 62.5
Duzib052G0972 Durio zibethinus HOM05D004569 ORTHO05D005333 5.7e-41 171.4 140 61.4
Gorai.005G045300 Gossypium raimondii HOM05D004569 ORTHO05D005333 7.4e-41 171.0 140 62.1
Gohir.D02G040900 Gossypium hirsutum HOM05D004569 ORTHO05D005333 1.7e-40 169.9 140 62.1
CiPaw.01G195800 Carya illinoinensis HOM05D004569 ORTHO05D005333 2.2e-40 169.5 141 64.5
Nitab4.5_0004412g0030 Nicotiana tabacum HOM05D004569 ORTHO05D005333 2.8e-40 169.1 149 59.7
Sc19g0003960 Simmondsia chinensis HOM05D004569 ORTHO05D005333 6.3e-40 167.9 143 60.8
Nitab4.5_0000321g0230 Nicotiana tabacum HOM05D004569 ORTHO05D005333 4.1e-39 165.2 153 58.8
GSVIVG01036653001 Vitis vinifera HOM05D004569 ORTHO05D005333 9.1e-39 164.1 113 73.5
CANSAT78G0168 Cannabis sativa HOM05D004569 ORTHO05D005333 5.9e-38 161.4 134 59.0
CAN.G135.33 Capsicum annuum HOM05D004569 ORTHO05D005333 8.5e-37 157.5 147 57.8
Nn1g01867 Nelumbo nucifera HOM05D004569 ORTHO05D005333 1.9e-36 156.4 146 58.9
Cfa006984 Carpinus fangiana HOM05D004569 ORTHO05D005333 7.2e-36 154.5 125 64.0
Haze_03750 Corylus avellana HOM05D004569 ORTHO05D005333 9.4e-36 154.1 125 62.4
Manes.02G208200 Manihot esculenta HOM05D004569 ORTHO05D005333 1.6e-35 153.3 125 63.2
ECA246G0155 Erigeron canadensis HOM05D004569 ORTHO05D005333 2.7e-35 152.5 126 61.9
PSO832G4509 Papaver somniferum HOM05D004569 ORTHO05D005333 2.7e-35 152.5 127 63.0
Peaxi162Scf00904g00217 Petunia axillaris HOM05D004569 ORTHO05D005333 2.7e-35 152.5 155 54.2
PSO210G1425 Papaver somniferum HOM05D004569 ORTHO05D005333 4.7e-35 151.8 141 59.6
Ciclev10006087m.g Citrus clementina HOM05D004569 ORTHO05D005333 6.1e-35 151.4 136 58.8
ClCG06G006470 Citrullus lanatus HOM05D004569 ORTHO05D005333 1.0e-34 150.6 136 58.8
Oeu058961.1 Olea europaea HOM05D004569 ORTHO05D005333 1.0e-34 150.6 142 57.0
SGA_v2.0_scaffold45G17132 Striga asiatica HOM05D004044 ORTHO05D005333 1.4e-34 150.2 134 58.2
Atru.chr4.2374 Acer truncatum HOM05D004569 ORTHO05D005333 1.8e-34 149.8 147 57.1
Hund09493 Selenicereus undatus HOM05D004569 ORTHO05D005333 1.8e-34 149.8 141 58.2
TWI63G1720 Tripterygium wilfordii HOM05D004569 ORTHO05D005333 3.9e-34 148.7 159 52.2
Aqoxy5G00407 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 5.1e-34 148.3 132 58.3
HanXRQChr05g0158611 Helianthus annuus HOM05D004569 ORTHO05D005333 6.7e-34 147.9 114 66.7
HanXRQChr06g0173001 Helianthus annuus HOM05D004569 ORTHO05D005333 6.7e-34 147.9 125 62.4
Potri.005G067600 Populus trichocarpa HOM05D004569 ORTHO05D005333 1.1e-33 147.1 131 61.1
Lj6g0017152 Lotus japonicus HOM05D004569 ORTHO05D005333 2.0e-33 146.4 163 53.4
SalBow8G0974 Salvia bowleyana HOM05D004569 ORTHO05D005333 4.4e-33 145.2 132 58.3
Sed0021164 Sechium edule HOM05D004569 ORTHO05D005333 5.7e-33 144.8 153 53.6
Aa31LG11G680 Aethionema arabicum HOM05D004569 ORTHO05D005333 9.7e-33 144.1 134 56.7
SalBow2G1663 Salvia bowleyana HOM05D004569 ORTHO05D005333 9.7e-33 144.1 142 54.9
CsaV3_2G013430 Cucumis sativus L. HOM05D004569 ORTHO05D005333 1.7e-32 143.3 125 56.8
Lalb_Chr06g0161741 Lupinus albus HOM05D004569 ORTHO05D005333 2.2e-32 142.9 141 54.6
PGR004G1818 Punica granatum HOM05D004569 ORTHO05D005333 3.7e-32 142.1 128 57.8
Oeu042815.1 Olea europaea HOM05D004569 ORTHO05D005333 4.8e-32 141.7 142 54.9
PGR031G3247 Punica granatum HOM05D004569 ORTHO05D005333 6.3e-32 141.4 139 56.8
Lsat_1_v5_gn_1_12980 Lactuca sativa HOM05D004569 ORTHO05D005333 8.2e-32 141.0 126 57.1
arahy.Tifrunner.gnm1.ann1.NDW3GA Arachis hypogaea HOM05D004569 ORTHO05D005333 1.1e-31 140.6 147 55.1
CARHR276760 Cardamine hirsuta HOM05D004569 ORTHO05D005333 1.1e-31 140.6 134 55.2
Sopen11g003670 Solanum pennellii HOM05D004569 ORTHO05D005333 1.1e-31 140.6 163 48.5
arahy.Tifrunner.gnm1.ann1.SFA2KC Arachis hypogaea HOM05D004569 ORTHO05D005333 1.4e-31 140.2 146 54.1
Nitab4.5_0004743g0130 Nicotiana tabacum HOM05D004569 ORTHO05D005333 2.4e-31 139.4 145 56.6
Dinv40544 Davidia involucrata HOM05D004569 ORTHO05D005333 3.1e-31 139.0 89 77.5
AL8G39970 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 5.3e-31 138.3 141 53.2
AT5G62950 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 5.3e-31 138.3 140 55.0
Cc03_g04240 Coffea canephora HOM05D004569 ORTHO05D005333 5.3e-31 138.3 146 52.7
CDE05G0131 Ceratophyllum demersum HOM05D004569 ORTHO05D005333 7.0e-31 137.9 132 56.1
MD13G1198900 Malus domestica HOM05D004569 ORTHO05D005333 1.6e-30 136.7 152 45.4
AL3G51140 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 2.0e-30 136.3 136 55.1
Thhalv10005100m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 2.0e-30 136.3 140 51.4
Sp2g26090 Schrenkiella parvula HOM05D004569 ORTHO05D005333 2.0e-30 136.3 141 53.2
Phvul.001G230900 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 3.5e-30 135.6 134 53.7
VMungo1383G2501 Vigna mungo HOM05D004569 ORTHO05D005333 3.5e-30 135.6 128 54.7
Thhalv10000370m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 4.5e-30 135.2 142 53.5
Prupe.1G020700 Prunus persica HOM05D004569 ORTHO05D005333 5.9e-30 134.8 143 52.4
SGA_v2.0_scaffold353G49718 Striga asiatica HOM05D004569 ORTHO05D005333 7.7e-30 134.4 123 56.9
Lj5g0008299 Lotus japonicus HOM05D004569 ORTHO05D005333 1.0e-29 134.0 136 54.4
Carub.0004s0755 Capsella rubella HOM05D004569 ORTHO05D005333 3.8e-29 132.1 145 50.3
Carub.0008s2366 Capsella rubella HOM05D004569 ORTHO05D005333 3.8e-29 132.1 144 49.3
THA.LOC104827037 Tarenaya hassleriana HOM05D004569 ORTHO05D005333 3.8e-29 132.1 138 50.7
unitig_748.g7305 Utricularia gibba HOM05D004569 ORTHO05D005333 5.0e-29 131.7 131 55.0
Glyma.18G039600 Glycine max HOM05D004569 ORTHO05D005333 6.5e-29 131.3 160 48.1
Ah.02g110960 Amaranthus hybridus HOM05D000936 ORTHO05D001411 8.5e-29 131.0 130 56.9
BcaB07g29675 Brassica carinata HOM05D004569 ORTHO05D005333 1.1e-28 130.6 141 56.0
MELO3C014285.2 Cucumis melo HOM05D004569 ORTHO05D005333 1.1e-28 130.6 139 51.1
AUR62028629 Chenopodium quinoa HOM05D004569 ORTHO05D005333 1.9e-28 129.8 135 54.1
VMungo1383G1439 Vigna mungo HOM05D004569 ORTHO05D005333 2.5e-28 129.4 142 49.3
Glyma.11G217000 Glycine max HOM05D004569 ORTHO05D005333 3.2e-28 129.0 160 47.5
MBI18_g09782_MAGBIO Magnolia biondii HOM05D004569 ORTHO05D005333 3.2e-28 129.0 132 56.1
BcaC03g18183 Brassica carinata HOM05D004569 ORTHO05D005333 5.5e-28 128.3 137 53.3
A02p42590 Brassica napus HOM05D004569 ORTHO05D005333 7.2e-28 127.9 149 52.3
BraA02t09187Z Brassica rapa HOM05D004569 ORTHO05D005333 9.4e-28 127.5 147 53.1
Ca_17658_v3 Cicer arietinum L. HOM05D004569 ORTHO05D005333 9.4e-28 127.5 153 49.7
C02p62490 Brassica napus HOM05D004569 ORTHO05D005333 1.2e-27 127.1 156 50.0
BolC2t12308H Brassica oleracea HOM05D004569 ORTHO05D005333 1.2e-27 127.1 156 50.0
Migut.B00535 Erythranthe guttata HOM05D004569 ORTHO05D005333 1.2e-27 127.1 131 51.1
Hma1.2p1_0602F.1_g187570 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 2.1e-27 126.3 89 70.8
Medtr7g034585 Medicago truncatula HOM05D004569 ORTHO05D005333 2.7e-27 125.9 160 46.9
A09p07940 Brassica napus HOM05D004569 ORTHO05D005333 3.6e-27 125.6 151 46.4
TAR636G3114 Trochodendron aralioides HOM05D004569 ORTHO05D005333 4.7e-27 125.2 134 52.2
Atru.chr4.2398 Acer truncatum HOM05D004569 ORTHO05D005333 8.0e-27 124.4 89 66.3
Sabra05G0055500 Salix brachista HOM05D004569 ORTHO05D005333 1.0e-26 124.0 89 68.5
BcaB04g19957 Brassica carinata HOM05D004569 ORTHO05D005333 1.8e-26 123.2 143 48.3
C09p08990 Brassica napus HOM05D004569 ORTHO05D005333 1.8e-26 123.2 151 45.0
BolC6t39293H Brassica oleracea HOM05D004569 ORTHO05D005333 1.8e-26 123.2 156 48.1
BolC9t53811H Brassica oleracea HOM05D004569 ORTHO05D005333 1.8e-26 123.2 151 45.0
Psat3g163880 Pisum sativum HOM05D004569 ORTHO05D005333 1.8e-26 123.2 161 46.6
Lsat_1_v5_gn_6_95400 Lactuca sativa HOM05D004569 ORTHO05D005333 2.3e-26 122.9 103 59.2
BcaC08g46303 Brassica carinata HOM05D004569 ORTHO05D005333 3.0e-26 122.5 138 50.0
BcaC04g23378 Brassica carinata HOM05D004569 ORTHO05D005333 6.7e-26 121.3 140 47.1
PGSC0003DMG400027326 Solanum tuberosum HOM05D004569 ORTHO05D005333 6.7e-26 121.3 162 45.7
C06p41320 Brassica napus HOM05D004569 ORTHO05D005333 8.8e-26 120.9 136 50.7
ATR0829G086 Amborella trichopoda HOM05D004569 ORTHO05D005333 1.1e-25 120.6 119 57.1
BcaC01g02544 Brassica carinata HOM05D004569 ORTHO05D005333 1.1e-25 120.6 158 46.2
C03p63650 Brassica napus HOM05D004569 ORTHO05D005333 1.1e-25 120.6 158 46.2
BolC3t18624H Brassica oleracea HOM05D004569 ORTHO05D005333 1.1e-25 120.6 158 46.2
Eucgr.H03416 Eucalyptus grandis HOM05D004569 ORTHO05D005333 1.1e-25 120.6 133 48.1
BraA09t36445Z Brassica rapa HOM05D004569 ORTHO05D005333 1.5e-25 120.2 143 47.6
SalBow1G3047 Salvia bowleyana HOM05D004569 ORTHO05D005333 1.5e-25 120.2 106 57.5
TPR.G14863 Trifolium pratense HOM05D004569 ORTHO05D005333 2.2e-24 116.3 161 47.2
RcHm_v2.0_Chr6g0280701 Rosa chinensis HOM05D004569 ORTHO05D005333 4.8e-24 115.2 128 50.8
COL.COLO4_21559 Corchorus olitorius HOM05D004569 ORTHO05D005333 1.1e-23 114.0 117 53.0
RcHm_v2.0_Chr4g0387641 Rosa chinensis HOM05D004569 ORTHO05D005333 1.1e-23 114.0 128 50.8
FvH4_4g01070 Fragaria vesca HOM05D004569 ORTHO05D005333 2.4e-23 112.8 131 47.3
Dinv07599 Davidia involucrata HOM05D004569 ORTHO05D005333 7.0e-23 111.3 75 73.3
FAN12G4296 Fragaria x ananassa HOM05D004569 ORTHO05D005333 9.1e-23 110.9 135 46.7
FvH4_5g27570 Fragaria vesca HOM05D004569 ORTHO05D005333 2.0e-22 109.8 131 45.8
Aqoxy2G03457 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 3.5e-22 109.0 81 64.2
Atru.chr5.182 Acer truncatum HOM05D004569 ORTHO05D005333 1.0e-21 107.5 119 53.8
Zm00001eb076290 Zea mays HOM05D004569 ORTHO05D005333 1.3e-21 107.1 128 50.0
Zm00001eb310390 Zea mays HOM05D004569 ORTHO05D005333 1.3e-21 107.1 128 50.0
HPP92_022914 Vanilla planifolia HOM05D004569 ORTHO05D005333 2.2e-21 106.3 150 43.3
Zm00001eb076250 Zea mays HOM05D004569 ORTHO05D005333 2.9e-21 105.9 144 47.2
Zm00001eb076270 Zea mays HOM05D004569 ORTHO05D005333 2.9e-21 105.9 144 45.8
FAN13G2556 Fragaria x ananassa HOM05D004569 ORTHO05D005333 5.5e-20 101.7 132 46.2
Medtr6g045613 Medicago truncatula HOM05D004569 ORTHO05D005333 7.2e-20 101.3 89 55.1
BraA06t25922Z Brassica rapa HOM05D004569 ORTHO05D005333 9.4e-20 100.9 123 48.0
Pp3c21_14050 Physcomitrium patens HOM05D004569 ORTHO05D005333 1.6e-19 100.1 146 39.7
Psat3g162000 Pisum sativum HOM05D004569 ORTHO05D005333 2.1e-19 99.8 89 53.9
BcaB02g09711 Brassica carinata HOM05D004569 ORTHO05D005333 1.0e-18 97.4 148 42.6
Hma1.2p1_0549F.1_g176970 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 1.4e-18 97.1 91 52.7
Medtr6g045603 Medicago truncatula HOM05D004569 ORTHO05D005333 2.3e-18 96.3 158 39.9
Os12g0488800 Oryza sativa ssp. japonica HOM05D004569 ORTHO05D005333 1.5e-17 93.6 86 57.0
vmacro08367 Vaccinium macrocarpon HOM05D004569 ORTHO05D005333 2.0e-17 93.2 145 44.8
AUR62033084 Chenopodium quinoa HOM05D004569 ORTHO05D005333 9.8e-17 90.9 100 50.0
Mapoly0090s0037 Marchantia polymorpha HOM05D004569 ORTHO05D005333 9.8e-17 90.9 120 40.8
FAN18G3311 Fragaria x ananassa HOM05D004569 ORTHO05D005333 5.4e-15 85.1 131 39.7
AagrBONN_evm.TU.Sc2ySwM_228.788 Anthoceros agrestis HOM05D004569 ORTHO05D005333 2.0e-14 83.2 140 40.7
AT3G28956 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 1.7e-13 80.1 64 57.8
Lj6C645G5 Lonicera japonica HOM05D004569 ORTHO05D005333 8.5e-13 77.8 129 40.3
arahy.Tifrunner.gnm1.ann1.LSLG48 Arachis hypogaea HOM05D001291 ORTHO05D005333 1.1e-12 77.4 122 41.8
SEGI_13490 Sequoiadendron giganteum HOM05D004569 ORTHO05D000001 9.5e-12 74.3 95 46.3
SMO343G0078 Selaginella moellendorffii HOM05D004569 ORTHO05D005333 8.0e-11 71.2 123 36.6
CBR_g19683 Chara braunii HOM05D004569 ORTHO05D005333 2.3e-10 69.7 91 45.1
GSVIVG01008529001 Vitis vinifera HOM05D004569 ORTHO05D005333 3.0e-10 69.3 52 65.4
AUR62008054 Chenopodium quinoa HOM05D000001 ORTHO05D000501 9.8e-09 64.3 81 45.7
Phvul.001G219600 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 1.7e-08 63.5 67 52.2
Solyc11g007810.3 Solanum lycopersicum HOM05D004569 ORTHO05D005333 8.3e-08 61.2 74 43.2
SEGI_07191 Sequoiadendron giganteum HOM05D004569 ORTHO05D005333 1.1e-07 60.8 71 49.3
A06p29750 Brassica napus HOM05D004569 ORTHO05D005333 9.2e-07 57.8 57 47.4
Dinv14042 Davidia involucrata HOM05D002297 ORTHO05D002385 1.2e-06 57.4 42 64.3
SalBow2G3500 Salvia bowleyana HOM05D000011 ORTHO05D000018 5.9e-06 55.1 41 65.9


User provided reference genes

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