Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010626 Camellia sinensis var. sinensis HOM05D005396 ORTHO05D006400 2.9e-100 368.6 194 100.0
Actinidia06861 Actinidia chinensis HOM05D005396 ORTHO05D006400 8.2e-71 270.8 192 72.9
vmacro04253 Vaccinium macrocarpon HOM05D005396 ORTHO05D006400 3.0e-65 252.3 192 67.7
Rhsim13G0228100 Rhododendron simsii HOM05D005396 ORTHO05D006400 8.8e-65 250.8 192 66.7
RhsimUnG0154800 Rhododendron simsii HOM05D005396 ORTHO05D006400 1.2e-64 250.4 192 66.7
Hma1.2p1_0143F.1_g064480 Hydrangea macrophylla HOM05D005396 ORTHO05D006400 1.7e-60 236.5 189 63.0
TAR623G1186 Trochodendron aralioides HOM05D005396 ORTHO05D006400 7.5e-56 221.1 192 56.2
Aqoxy5G02307 Aquilegia oxysepala HOM05D005396 ORTHO05D006400 2.7e-53 212.6 191 53.9
Nn4g25074 Nelumbo nucifera HOM05D005396 ORTHO05D006400 7.7e-53 211.1 187 56.7
PGR119G0906 Punica granatum HOM05D005396 ORTHO05D006400 2.9e-52 209.1 191 55.0
Cfa013848 Carpinus fangiana HOM05D005396 ORTHO05D006400 3.8e-52 208.8 192 56.2
Nitab4.5_0001568g0090 Nicotiana tabacum HOM05D005396 ORTHO05D006400 3.8e-52 208.8 161 62.7
CiPaw.07G159800 Carya illinoinensis HOM05D005396 ORTHO05D006400 3.3e-51 205.7 195 55.9
MSTRG.17554 Avicennia marina HOM05D005396 ORTHO05D006400 4.3e-51 205.3 185 56.8
Cc01_g01860 Coffea canephora HOM05D005396 ORTHO05D006400 5.6e-51 204.9 189 55.0
QL93p0267_0015 Quercus lobata HOM05D005396 ORTHO05D006400 7.3e-51 204.5 191 57.6
Peaxi162Scf00441g00618 Petunia axillaris HOM05D005396 ORTHO05D006400 1.2e-50 203.8 181 55.8
Hund20984 Selenicereus undatus HOM05D005396 ORTHO05D006400 1.2e-50 203.8 193 54.9
Eucgr.J00626 Eucalyptus grandis HOM05D005396 ORTHO05D006400 1.6e-50 203.4 188 56.4
GSVIVG01037451001 Vitis vinifera HOM05D005396 ORTHO05D006400 1.6e-50 203.4 190 60.5
Sopen01g002210 Solanum pennellii HOM05D005396 ORTHO05D006400 2.1e-50 203.0 188 55.3
RcHm_v2.0_Chr5g0056531 Rosa chinensis HOM05D005396 ORTHO05D006400 6.1e-50 201.4 194 54.1
Solyc01g006210.4 Solanum lycopersicum HOM05D005396 ORTHO05D006400 1.0e-49 200.7 186 54.8
Nitab4.5_0005132g0020 Nicotiana tabacum HOM05D005396 ORTHO05D006400 2.3e-49 199.5 199 54.3
PGSC0003DMG400032195 Solanum tuberosum HOM05D005396 ORTHO05D006400 4.0e-49 198.7 188 54.3
HanXRQChr01g0021191 Helianthus annuus HOM05D005396 ORTHO05D006400 1.5e-48 196.8 128 66.4
vmacro22428 Vaccinium macrocarpon HOM05D005396 ORTHO05D006400 2.6e-48 196.1 164 62.2
Sabra04G0132800 Salix brachista HOM05D005396 ORTHO05D006400 4.4e-48 195.3 191 51.8
Manes.04G053800 Manihot esculenta HOM05D005396 ORTHO05D006400 7.5e-48 194.5 191 52.9
ECA248G0004 Erigeron canadensis HOM05D005396 ORTHO05D006400 2.9e-47 192.6 173 56.6
Lsat_1_v5_gn_1_68341 Lactuca sativa HOM05D005396 ORTHO05D006400 4.9e-47 191.8 170 57.6
CAN.G140.42 Capsicum annuum HOM05D005396 ORTHO05D006400 6.4e-47 191.4 188 51.6
DCAR_024368 Daucus carota HOM05D005396 ORTHO05D006400 1.1e-46 190.7 190 52.6
AL6G32750 Arabidopsis lyrata HOM05D005396 ORTHO05D006400 1.4e-46 190.3 181 56.4
TWI31G0083 Tripterygium wilfordii HOM05D005396 ORTHO05D006400 3.2e-46 189.1 193 52.3
Oeu058539.1 Olea europaea HOM05D005396 ORTHO05D006400 4.1e-46 188.7 192 50.0
Potri.004G195600 Populus trichocarpa HOM05D005396 ORTHO05D006400 4.1e-46 188.7 193 50.8
Prupe.6G153500 Prunus persica HOM05D005396 ORTHO05D006400 4.1e-46 188.7 192 51.6
Thecc.09G337500 Theobroma cacao HOM05D005396 ORTHO05D006400 4.1e-46 188.7 200 56.5
BcaC04g19522 Brassica carinata HOM05D005396 ORTHO05D006400 5.4e-46 188.3 127 68.5
C09p54930 Brassica napus HOM05D005396 ORTHO05D006400 5.4e-46 188.3 127 68.5
BolC9t58356H Brassica oleracea HOM05D005396 ORTHO05D006400 5.4e-46 188.3 127 68.5
Migut.N02270 Erythranthe guttata HOM05D005396 ORTHO05D006400 5.4e-46 188.3 183 54.6
Sc12g0000550 Simmondsia chinensis HOM05D005396 ORTHO05D006400 5.4e-46 188.3 190 50.0
MD11G1180700 Malus domestica HOM05D005396 ORTHO05D006400 9.2e-46 187.6 192 52.6
Atru.chr3.1131 Acer truncatum HOM05D005396 ORTHO05D006400 1.2e-45 187.2 200 55.5
A10p18950 Brassica napus HOM05D005396 ORTHO05D006400 1.2e-45 187.2 184 51.1
BraA10t43972Z Brassica rapa HOM05D005396 ORTHO05D006400 1.2e-45 187.2 184 51.1
PSO384G1109 Papaver somniferum HOM05D005396 ORTHO05D006400 1.2e-45 187.2 156 53.8
Atru.chr3.1122 Acer truncatum HOM05D005396 ORTHO05D006400 2.7e-45 186.0 200 55.0
Aa31LG1G13640 Aethionema arabicum HOM05D005396 ORTHO05D006400 3.5e-45 185.7 189 48.7
arahy.Tifrunner.gnm1.ann1.MJD0TM Arachis hypogaea HOM05D005396 ORTHO05D006400 3.5e-45 185.7 137 60.6
Carub.0006s1945 Capsella rubella HOM05D005396 ORTHO05D006400 3.5e-45 185.7 188 50.0
Ca_16226_v3 Cicer arietinum L. HOM05D005396 ORTHO05D006400 4.6e-45 185.3 134 61.2
Ca_30133_v3 Cicer arietinum L. HOM05D005396 ORTHO05D006400 4.6e-45 185.3 134 61.2
FAN25G1745 Fragaria x ananassa HOM05D005396 ORTHO05D006400 1.0e-44 184.1 166 55.4
THA.LOC104799054 Tarenaya hassleriana HOM05D005396 ORTHO05D006400 1.0e-44 184.1 188 51.6
Glyma.20G050900 Glycine max HOM05D005396 ORTHO05D006400 1.3e-44 183.7 165 56.4
CANSAT54G2052 Cannabis sativa HOM05D005396 ORTHO05D006400 1.7e-44 183.3 133 64.7
Sp6g23380 Schrenkiella parvula HOM05D005396 ORTHO05D006400 1.7e-44 183.3 130 63.8
Phvul.L001837 Phaseolus vulgaris HOM05D005396 ORTHO05D006400 2.3e-44 183.0 126 65.9
BcaB08g36475 Brassica carinata HOM05D005396 ORTHO05D006400 3.0e-44 182.6 121 67.8
Cpa.g.sc103.64 Carica papaya HOM05D005396 ORTHO05D006400 3.0e-44 182.6 128 61.7
FvH4_3g30540 Fragaria vesca HOM05D005396 ORTHO05D006400 3.0e-44 182.6 189 50.8
TWI79G1618 Tripterygium wilfordii HOM05D005396 ORTHO05D006400 3.0e-44 182.6 198 50.0
Dinv09746 Davidia involucrata HOM05D005396 ORTHO05D006400 3.9e-44 182.2 106 77.4
Thhalv10013965m.g Eutrema salsugineum HOM05D005396 ORTHO05D006400 3.9e-44 182.2 129 64.3
Ah.15g099430 Amaranthus hybridus HOM05D005396 ORTHO05D006400 5.0e-44 181.8 187 55.1
FAN11G0079 Fragaria x ananassa HOM05D005396 ORTHO05D006400 6.6e-44 181.4 189 50.8
Lalb_Chr19g0127081 Lupinus albus HOM05D005396 ORTHO05D006400 6.6e-44 181.4 127 60.6
EL10Ac7g16216 Beta vulgaris HOM05D005396 ORTHO05D006400 8.6e-44 181.0 186 52.2
CARHR191730 Cardamine hirsuta HOM05D005396 ORTHO05D006400 1.1e-43 180.6 129 63.6
FAN16G3367 Fragaria x ananassa HOM05D005396 ORTHO05D006400 1.1e-43 180.6 187 50.8
SalBow2G1218 Salvia bowleyana HOM05D005396 ORTHO05D006400 1.1e-43 180.6 184 49.5
BcaB05g22770 Brassica carinata HOM05D005396 ORTHO05D006400 1.5e-43 180.3 129 64.3
Duzib170G1145 Durio zibethinus HOM05D005396 ORTHO05D006400 1.9e-43 179.9 199 49.2
Medtr3g078850 Medicago truncatula HOM05D005396 ORTHO05D006400 2.5e-43 179.5 161 54.0
AUR62001615 Chenopodium quinoa HOM05D005396 ORTHO05D006400 4.3e-43 178.7 182 50.0
Ciclev10017900m.g Citrus clementina HOM05D005396 ORTHO05D006400 4.3e-43 178.7 185 51.4
AT5G21140 Arabidopsis thaliana HOM05D005396 ORTHO05D006400 5.6e-43 178.3 132 60.6
BNapus_Darmor_BZH_scaffold_38p01120 Brassica napus HOM05D005396 ORTHO05D006400 7.3e-43 177.9 187 50.8
BraA02t05619Z Brassica rapa HOM05D005396 ORTHO05D006400 7.3e-43 177.9 187 50.8
EL10Ac1g01677 Beta vulgaris HOM05D005396 ORTHO05D006400 9.5e-43 177.6 188 51.6
MBI13_g02393_MAGBIO Magnolia biondii HOM05D005396 ORTHO05D006400 9.5e-43 177.6 114 64.0
VMungo0540G2152 Vigna mungo HOM05D005396 ORTHO05D006400 1.6e-42 176.8 126 63.5
COL.COLO4_18366 Corchorus olitorius HOM05D005396 ORTHO05D006338 2.1e-42 176.4 187 51.3
Lj6g0008952 Lotus japonicus HOM05D005396 ORTHO05D006400 2.1e-42 176.4 217 44.7
BcaC03g13834 Brassica carinata HOM05D005396 ORTHO05D006400 2.8e-42 176.0 186 52.2
BolC2t07100H Brassica oleracea HOM05D005396 ORTHO05D006400 2.8e-42 176.0 186 52.2
SGA_v2.0_scaffold3G01566 Striga asiatica HOM05D005396 ORTHO05D006400 3.6e-42 175.6 186 50.5
ClCG02G024200 Citrullus lanatus HOM05D005396 ORTHO05D006400 2.3e-41 172.9 184 47.8
MELO3C014703.2 Cucumis melo HOM05D005396 ORTHO05D006400 4.0e-41 172.2 188 48.4
TPR.G28402 Trifolium pratense HOM05D005396 ORTHO05D006400 4.0e-41 172.2 151 55.0
ATR0307G059 Amborella trichopoda HOM05D005396 ORTHO05D006400 8.9e-41 171.0 188 48.4
CsaV3_4G017330 Cucumis sativus L. HOM05D005396 ORTHO05D006400 8.9e-41 171.0 118 62.7
Zm00001eb405340 Zea mays HOM05D005396 ORTHO05D006400 2.6e-40 169.5 181 47.5
Gohir.A03G035066 Gossypium hirsutum HOM05D005396 ORTHO05D006400 3.4e-40 169.1 189 48.1
EL10Ac7g16212 Beta vulgaris HOM05D005396 ORTHO05D006400 7.5e-40 167.9 194 49.0
Gorai.003G140300 Gossypium raimondii HOM05D005396 ORTHO05D006400 9.8e-40 167.5 190 47.9
Gohir.D03G133200 Gossypium hirsutum HOM05D005396 ORTHO05D006400 2.9e-39 166.0 190 47.4
CDE02G2011 Ceratophyllum demersum HOM05D005396 ORTHO05D006400 3.7e-39 165.6 124 60.5
HPP92_018982 Vanilla planifolia HOM05D005396 ORTHO05D006400 6.4e-39 164.9 113 60.2
RcHm_v2.0_Chr6g0256561 Rosa chinensis HOM05D005396 ORTHO05D006400 8.3e-39 164.5 111 64.0
Sed0007754 Sechium edule HOM05D005396 ORTHO05D006400 4.1e-38 162.2 127 56.7
Os12g0127100 Oryza sativa ssp. japonica HOM05D005396 ORTHO05D006400 3.5e-37 159.1 132 54.5
PSO339G5547 Papaver somniferum HOM05D005396 ORTHO05D006400 3.5e-37 159.1 102 64.7
Os11g0130300 Oryza sativa ssp. japonica HOM05D005396 ORTHO05D006400 2.3e-36 156.4 132 55.3
Haze_22522 Corylus avellana HOM05D005396 ORTHO05D006400 8.6e-36 154.5 192 46.9
Psat0s646g0040 Pisum sativum HOM05D005396 ORTHO05D006400 8.6e-36 154.5 201 45.3
arahy.Tifrunner.gnm1.ann1.MU94NL Arachis hypogaea HOM05D005396 ORTHO05D006400 9.5e-35 151.0 110 60.9
RcHm_v2.0_Chr5g0056151 Rosa chinensis HOM05D005396 ORTHO05D006400 2.1e-34 149.8 166 47.6
Actinidia16276 Actinidia chinensis HOM05D005396 ORTHO05D006400 3.2e-30 136.0 112 64.3
Psat5g030400 Pisum sativum HOM05D001137 ORTHO05D006400 3.2e-30 136.0 126 52.4
Dinv36333 Davidia involucrata HOM05D005396 ORTHO05D006400 3.5e-29 132.5 80 76.2
Pp3c20_10070 Physcomitrium patens HOM05D005396 ORTHO05D006400 1.7e-28 130.2 130 43.1
SHI25366 Sapria himalayana HOM05D005396 ORTHO05D000023 3.9e-28 129.0 156 43.6
AUR62020162 Chenopodium quinoa HOM05D005396 ORTHO05D006400 1.1e-27 127.5 123 55.3
Lj2A553G20 Lonicera japonica HOM05D005396 ORTHO05D006400 4.7e-26 122.1 83 65.1
EL10Ac7g16205 Beta vulgaris HOM05D005396 ORTHO05D006400 3.1e-25 119.4 248 37.1
BcaC03g13835 Brassica carinata HOM05D005396 ORTHO05D006400 1.2e-24 117.5 109 53.2
BolC2t07101H Brassica oleracea HOM05D005396 ORTHO05D006400 2.6e-24 116.3 104 54.8
FAN21G3982 Fragaria x ananassa HOM05D005396 ORTHO05D006400 4.4e-24 115.5 80 67.5
BraA02t05620Z Brassica rapa HOM05D005396 ORTHO05D006400 6.4e-23 111.7 100 54.0
AagrBONN_evm.TU.Sc2ySwM_368.35 Anthoceros agrestis HOM05D005396 ORTHO05D006400 7.1e-22 108.2 97 45.4
BNapus_Darmor_BZH_scaffold_38p01110 Brassica napus HOM05D005396 ORTHO05D006400 2.7e-21 106.3 100 52.0
SMO239G0090 Selaginella moellendorffii HOM05D005396 ORTHO05D006400 1.0e-20 104.4 96 45.8
SEGI_19301 Sequoiadendron giganteum HOM05D005396 ORTHO05D006400 8.6e-20 101.3 88 53.4
CBR_g4478 Chara braunii HOM05D005396 ORTHO05D000048 1.9e-19 100.1 115 39.1
unitig_60.g25792 Utricularia gibba HOM05D005396 ORTHO05D006400 6.9e-17 91.7 132 40.2
EL10Ac7g16209 Beta vulgaris HOM05D005396 ORTHO05D006400 1.5e-16 90.5 74 60.8
EL10Ac7g16214 Beta vulgaris HOM05D005396 ORTHO05D006400 2.0e-16 90.1 147 39.5
EL10Ac7g16203 Beta vulgaris HOM05D005396 ORTHO05D006400 3.4e-16 89.4 74 60.8
Zm00001eb199750 Zea mays HOM05D005396 ORTHO05D006400 2.1e-13 80.1 66 60.6
HanXRQChr08g0223711 Helianthus annuus HOM05D005396 ORTHO05D006400 2.8e-10 69.7 45 62.2
SEGI_06155 Sequoiadendron giganteum HOM05D005396 ORTHO05D006400 3.1e-09 66.2 40 62.5
CARHR258970 Cardamine hirsuta HOM05D005396 ORTHO05D006400 2.9e-07 59.7 44 61.4


User provided reference genes

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