Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009966 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 0.0e+00 2545.8 1275 100.0
CSS0040753 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 0.0e+00 2489.5 1267 98.7
Actinidia21444 Actinidia chinensis HOM05D005691 ORTHO05D007096 0.0e+00 2081.2 1287 81.4
vmacro09398 Vaccinium macrocarpon HOM05D005691 ORTHO05D007096 0.0e+00 2001.5 1351 75.6
Rhsim04G0038700 Rhododendron simsii HOM05D005691 ORTHO05D007096 0.0e+00 1981.1 1428 71.9
Hma1.2p1_0133F.1_g061380 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 0.0e+00 1853.6 1257 72.9
Lj8A134T75 Lonicera japonica HOM05D005691 ORTHO05D007096 0.0e+00 1837.8 1285 71.2
Haze_12684 Corylus avellana HOM05D005691 ORTHO05D007096 0.0e+00 1828.9 1289 71.3
Cc00_g04460 Coffea canephora HOM05D005691 ORTHO05D007096 0.0e+00 1810.0 1288 69.9
QL08p028494 Quercus lobata HOM05D005691 ORTHO05D007096 0.0e+00 1803.5 1287 70.2
Nitab4.5_0009877g0010 Nicotiana tabacum HOM05D005691 ORTHO05D007096 0.0e+00 1751.5 1290 68.5
Thecc.01G191500 Theobroma cacao HOM05D005691 ORTHO05D007096 0.0e+00 1751.5 1289 67.6
CiPaw.03G279200 Carya illinoinensis HOM05D005691 ORTHO05D007096 0.0e+00 1749.9 1289 68.4
GSVIVG01030051001 Vitis vinifera HOM05D005691 ORTHO05D007096 0.0e+00 1748.4 1273 69.0
Manes.12G061100 Manihot esculenta HOM05D005691 ORTHO05D007096 0.0e+00 1746.5 1268 68.5
Atru.chr6.3368 Acer truncatum HOM05D005691 ORTHO05D007096 0.0e+00 1742.6 1293 68.4
Peaxi162Scf00776g00233 Petunia axillaris HOM05D005691 ORTHO05D007096 0.0e+00 1740.3 1299 68.1
PGSC0003DMG400006150 Solanum tuberosum HOM05D005691 ORTHO05D007096 0.0e+00 1739.9 1290 68.2
Dinv07866 Davidia involucrata HOM05D005691 ORTHO05D007096 0.0e+00 1736.1 1288 69.5
Nitab4.5_0000441g0080 Nicotiana tabacum HOM05D005691 ORTHO05D007096 0.0e+00 1727.2 1290 67.4
Gohir.A07G191000 Gossypium hirsutum HOM05D005691 ORTHO05D007096 0.0e+00 1725.7 1288 66.9
Sopen07g024300 Solanum pennellii HOM05D005691 ORTHO05D007096 0.0e+00 1725.7 1290 67.5
Prupe.3G200800 Prunus persica HOM05D005691 ORTHO05D007096 0.0e+00 1723.4 1285 67.2
Potri.002G221300 Populus trichocarpa HOM05D005691 ORTHO05D007096 0.0e+00 1712.2 1261 67.2
CAN.G854.9 Capsicum annuum HOM05D005691 ORTHO05D007096 0.0e+00 1711.4 1270 68.0
Ciclev10014054m.g Citrus clementina HOM05D005691 ORTHO05D007096 0.0e+00 1709.9 1289 67.0
RcHm_v2.0_Chr2g0156551 Rosa chinensis HOM05D005691 ORTHO05D007096 0.0e+00 1700.6 1284 66.3
FvH4_6g40930 Fragaria vesca HOM05D005691 ORTHO05D007096 0.0e+00 1679.8 1285 65.6
MSTRG.6644 Avicennia marina HOM05D005691 ORTHO05D007096 0.0e+00 1679.1 1286 65.9
ECA240G2675 Erigeron canadensis HOM05D005691 ORTHO05D007096 0.0e+00 1678.3 1273 66.8
FAN14G0170 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1676.0 1285 65.4
DCAR_019708 Daucus carota HOM05D005691 ORTHO05D007096 0.0e+00 1675.6 1274 65.9
MD17G1113600 Malus domestica HOM05D005691 ORTHO05D007096 0.0e+00 1674.8 1284 65.8
Nn1g07449 Nelumbo nucifera HOM05D005691 ORTHO05D007096 0.0e+00 1673.7 1283 66.0
FAN05G1189 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1671.0 1285 65.1
Migut.M00032 Erythranthe guttata HOM05D005691 ORTHO05D007096 0.0e+00 1664.4 1283 66.2
FAN09G3499 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1664.4 1285 65.1
Eucgr.A01048 Eucalyptus grandis HOM05D005691 ORTHO05D007096 0.0e+00 1664.0 1266 65.4
Sabra02G0169100 Salix brachista HOM05D005691 ORTHO05D007096 0.0e+00 1658.3 1304 64.3
Oeu029977.1 Olea europaea HOM05D005691 ORTHO05D007096 0.0e+00 1655.2 1279 66.0
Gohir.D07G197400 Gossypium hirsutum HOM05D005691 ORTHO05D007096 0.0e+00 1653.6 1219 67.7
Gorai.001G221100 Gossypium raimondii HOM05D005691 ORTHO05D007096 0.0e+00 1650.2 1219 67.8
CANSAT64G0049 Cannabis sativa HOM05D005691 ORTHO05D007096 0.0e+00 1648.6 1266 65.2
HanXRQChr03g0075241 Helianthus annuus HOM05D005691 ORTHO05D007096 0.0e+00 1645.6 1258 65.6
FAN02G1659 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1645.2 1300 64.0
AUR62015058 Chenopodium quinoa HOM05D005691 ORTHO05D007096 0.0e+00 1644.0 1287 63.9
TWI18G1215 Tripterygium wilfordii HOM05D005691 ORTHO05D007096 0.0e+00 1643.2 1271 65.2
PSO675G5893 Papaver somniferum HOM05D005691 ORTHO05D007096 0.0e+00 1640.2 1271 65.3
MBI16_g26390_MAGBIO Magnolia biondii HOM05D005691 ORTHO05D007096 0.0e+00 1639.8 1288 64.8
arahy.Tifrunner.gnm1.ann1.2CK2M8 Arachis hypogaea HOM05D005691 ORTHO05D007096 0.0e+00 1631.7 1268 64.5
arahy.Tifrunner.gnm1.ann1.5BD1HA Arachis hypogaea HOM05D005691 ORTHO05D007096 0.0e+00 1629.0 1267 64.5
AUR62017514 Chenopodium quinoa HOM05D005691 ORTHO05D007096 0.0e+00 1619.8 1287 62.9
Glyma.14G008200 Glycine max HOM05D005691 ORTHO05D007096 0.0e+00 1618.6 1267 64.3
Glyma.02G305200 Glycine max HOM05D005691 ORTHO05D007096 0.0e+00 1614.0 1267 64.0
EL10Ac9g22718 Beta vulgaris HOM05D005691 ORTHO05D007096 0.0e+00 1611.7 1287 62.5
LjContig00081g0016683 Lotus japonicus HOM05D005691 ORTHO05D007096 0.0e+00 1611.3 1277 63.0
PGR042G3586 Punica granatum HOM05D005691 ORTHO05D007096 0.0e+00 1608.2 1264 65.1
Sc21g0000790 Simmondsia chinensis HOM05D005691 ORTHO05D007096 0.0e+00 1603.6 1288 63.0
Aqoxy4G02218 Aquilegia oxysepala HOM05D005691 ORTHO05D007096 0.0e+00 1598.2 1287 62.7
Hund01594 Selenicereus undatus HOM05D005691 ORTHO05D007096 0.0e+00 1593.9 1290 61.9
Phvul.008G284900 Phaseolus vulgaris HOM05D005691 ORTHO05D007096 0.0e+00 1590.9 1287 62.6
VMungo0647G0393 Vigna mungo HOM05D005691 ORTHO05D007096 0.0e+00 1589.3 1287 62.6
Ca_06452_v3 Cicer arietinum L. HOM05D005691 ORTHO05D007096 0.0e+00 1580.1 1262 62.4
TPR.G1235 Trifolium pratense HOM05D005691 ORTHO05D007096 0.0e+00 1578.9 1278 63.2
Psat2g005000 Pisum sativum HOM05D005691 ORTHO05D007096 0.0e+00 1577.4 1277 62.5
SGA_v2.0_scaffold73G24511 Striga asiatica HOM05D005691 ORTHO05D007096 0.0e+00 1563.5 1245 63.6
Medtr5g097260 Medicago truncatula HOM05D005691 ORTHO05D007096 0.0e+00 1563.1 1277 62.1
Lalb_Chr10g0107611 Lupinus albus HOM05D005691 ORTHO05D007096 0.0e+00 1553.9 1291 61.6
ClCG02G002780 Citrullus lanatus HOM05D005691 ORTHO05D007096 0.0e+00 1551.2 1272 62.7
MELO3C024202.2 Cucumis melo HOM05D005691 ORTHO05D007096 0.0e+00 1532.3 1270 62.1
CsaV3_7G002600 Cucumis sativus L. HOM05D005691 ORTHO05D007096 0.0e+00 1523.1 1273 62.1
SalBow7G1588 Salvia bowleyana HOM05D005691 ORTHO05D007096 0.0e+00 1511.9 1264 62.1
Sed0003649 Sechium edule HOM05D005691 ORTHO05D007096 0.0e+00 1509.6 1273 61.0
Lsat_1_v5_gn_9_104801 Lactuca sativa HOM05D005691 ORTHO05D007096 0.0e+00 1493.0 1261 61.5
THA.LOC104815358 Tarenaya hassleriana HOM05D005691 ORTHO05D007096 0.0e+00 1486.5 1266 60.0
ATR1149G135 Amborella trichopoda HOM05D005691 ORTHO05D007096 0.0e+00 1467.6 1275 58.5
Thhalv10003521m.g Eutrema salsugineum HOM05D005691 ORTHO05D007096 0.0e+00 1438.7 1277 58.4
Carub.0003s2665 Capsella rubella HOM05D005691 ORTHO05D007096 0.0e+00 1438.3 1291 58.0
AL3G42730 Arabidopsis lyrata HOM05D005691 ORTHO05D007096 0.0e+00 1432.9 1291 57.8
Sp3g23610 Schrenkiella parvula HOM05D005691 ORTHO05D007096 0.0e+00 1409.0 1288 57.1
BraA03t13590Z Brassica rapa HOM05D005691 ORTHO05D007096 0.0e+00 1406.0 1277 57.9
A03p44570 Brassica napus HOM05D005691 ORTHO05D007096 0.0e+00 1401.7 1277 57.7
C03p55370 Brassica napus HOM05D005691 ORTHO05D007096 0.0e+00 1401.3 1277 57.4
BcaC01g03178 Brassica carinata HOM05D005691 ORTHO05D007096 0.0e+00 1392.9 1277 57.1
BolC3t17809H Brassica oleracea HOM05D005691 ORTHO05D007096 0.0e+00 1392.9 1277 57.1
BcaB08g34496 Brassica carinata HOM05D005691 ORTHO05D007096 0.0e+00 1387.9 1277 57.0
SGA_v2.0_scaffold292G47401 Striga asiatica HOM05D005691 ORTHO05D007096 0.0e+00 1379.4 1265 57.4
BcaB06g26838 Brassica carinata HOM05D005691 ORTHO05D007096 0.0e+00 1375.5 1254 56.5
SGA_v2.0_scaffold292G47412 Striga asiatica HOM05D005691 ORTHO05D007096 0.0e+00 1361.3 1261 56.8
TAR626G1898 Trochodendron aralioides HOM05D005691 ORTHO05D007096 0.0e+00 1341.6 987 69.9
Os03g0225500 Oryza sativa ssp. japonica HOM05D005691 ORTHO05D007096 0.0e+00 1316.6 1263 53.8
Hma1.2p1_0133F.1_g061370 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 0.0e+00 1312.4 902 72.1
CARHR103010 Cardamine hirsuta HOM05D005691 ORTHO05D007096 0.0e+00 1310.8 1092 61.9
Zm00001eb399630 Zea mays HOM05D005691 ORTHO05D007096 0.0e+00 1307.0 1272 53.5
SEGI_38606 Sequoiadendron giganteum HOM05D005691 ORTHO05D007096 0.0e+00 1238.8 1290 51.2
AT2G05120 Arabidopsis thaliana HOM05D005691 ORTHO05D007096 0.0e+00 1217.6 988 63.5
Solyc07g047860.4 Solanum lycopersicum HOM05D005691 ORTHO05D007096 0.0e+00 1216.8 859 70.9
SHI10144 Sapria himalayana HOM05D005691 ORTHO05D007096 0.0e+00 1138.3 1234 50.2
BcaC06g35896 Brassica carinata HOM05D005691 ORTHO05D007096 5.6e-293 1011.5 1250 46.6
Mapoly0061s0124 Marchantia polymorpha HOM05D005691 ORTHO05D007096 8.4e-289 997.7 1279 43.9
SMO351G0158 Selaginella moellendorffii HOM05D005691 ORTHO05D007096 6.5e-257 891.7 1285 41.1
unitig_746.g26642 Utricularia gibba HOM05D005691 ORTHO05D007096 1.3e-249 867.5 1261 41.3
Pp3c21_14430 Physcomitrium patens HOM05D005691 ORTHO05D007096 3.3e-245 852.8 1244 40.4
AagrBONN_evm.TU.Sc2ySwM_362.2878 Anthoceros agrestis HOM05D005691 ORTHO05D007096 1.4e-243 847.4 1131 43.2
CDE04G3337 Ceratophyllum demersum HOM05D005691 ORTHO05D007096 1.8e-222 777.3 918 47.4
COL.COLO4_09229 Corchorus olitorius HOM05D005691 ORTHO05D007096 5.4e-179 632.9 482 66.0
HPP92_000880 Vanilla planifolia HOM05D005691 ORTHO05D007096 1.9e-176 624.4 582 54.6
COL.COLO4_09230 Corchorus olitorius HOM05D005691 ORTHO05D007096 6.2e-151 539.7 544 54.6
CBR_g39814 Chara braunii HOM05D005691 ORTHO05D007096 8.5e-124 449.5 1148 29.6
CDE04G1592 Ceratophyllum demersum HOM05D005691 ORTHO05D007096 5.5e-115 420.2 329 61.7
Cpa.g.sc211.12 Carica papaya HOM05D005691 ORTHO05D007096 2.8e-111 407.9 290 70.3
Cpa.g.sc211.9 Carica papaya HOM05D005691 ORTHO05D007096 3.4e-104 384.4 322 61.2
HPP92_000881 Vanilla planifolia HOM05D005691 ORTHO05D007096 2.4e-102 378.3 371 54.4
SMO351G0109 Selaginella moellendorffii HOM05D005691 ORTHO05D007096 2.0e-93 348.6 1075 28.0
C07p09910 Brassica napus HOM05D005691 ORTHO05D007096 1.1e-83 316.2 264 64.4
Hma1.2p1_1825F.1_g304370 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 5.8e-80 303.9 203 72.9
Hma1.2p1_0133F.1_g061390 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 4.0e-73 281.2 183 73.2
C07p09950 Brassica napus HOM05D005691 ORTHO05D007096 1.6e-69 269.2 310 48.1
Hma1.2p1_1825F.1_g304360 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 7.8e-61 240.4 150 77.3
BolC7t41441H Brassica oleracea HOM05D005691 ORTHO05D007096 8.7e-60 236.9 301 46.2
TAR626G0169 Trochodendron aralioides HOM05D005691 ORTHO05D007096 1.2e-53 216.5 171 59.1
C07p09940 Brassica napus HOM05D005691 ORTHO05D007096 1.7e-39 169.5 119 68.9
PGR042G0477 Punica granatum HOM05D005691 ORTHO05D007096 3.0e-36 158.7 128 67.2
CSS0045948 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 8.2e-34 150.6 76 94.7
MCO12G144 Micromonas commoda HOM05D005691 ORTHO05D007096 6.3e-26 124.4 661 24.7
PGR042G0061 Punica granatum HOM05D005691 ORTHO05D007096 6.3e-26 124.4 122 55.7
SalBow7G3724 Salvia bowleyana HOM05D005691 ORTHO05D007096 1.0e-20 107.1 96 51.0
BolC7t41437H Brassica oleracea HOM05D005691 ORTHO05D027513 2.5e-06 59.3 140 27.9
SEGI_34592 Sequoiadendron giganteum HOM05D005691 ORTHO05D007096 5.5e-06 58.2 39 69.2


User provided reference genes

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