Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009585 Camellia sinensis var. sinensis HOM05D006110 ORTHO05D007774 0.0e+00 1224.5 645 100.0
Dinv11233 Davidia involucrata HOM05D006110 ORTHO05D007774 1.6e-288 995.7 588 86.6
GSVIVG01036611001 Vitis vinifera HOM05D006110 ORTHO05D007774 1.2e-278 963.0 581 83.8
Rhsim07G0069200 Rhododendron simsii HOM05D006110 ORTHO05D007774 2.0e-278 962.2 631 80.0
GSVIVG01036631001 Vitis vinifera HOM05D006110 ORTHO05D007774 1.7e-277 959.1 581 83.6
Cfa010950 Carpinus fangiana HOM05D006110 ORTHO05D007774 1.4e-276 956.1 596 81.0
Actinidia07968 Actinidia chinensis HOM05D006110 ORTHO05D007774 1.6e-275 952.6 529 90.2
QL04p021435 Quercus lobata HOM05D006110 ORTHO05D007774 2.3e-274 948.7 593 81.3
CiPaw.06G056300 Carya illinoinensis HOM05D006110 ORTHO05D007774 5.0e-274 947.6 591 80.9
Prupe.7G006200 Prunus persica HOM05D006110 ORTHO05D007774 5.0e-274 947.6 591 81.4
QL07p029279 Quercus lobata HOM05D006110 ORTHO05D007774 5.0e-274 947.6 591 81.4
RcHm_v2.0_Chr1g0327151 Rosa chinensis HOM05D006110 ORTHO05D007774 1.9e-273 945.7 591 80.7
Manes.04G156400 Manihot esculenta HOM05D006110 ORTHO05D007774 1.2e-272 943.0 589 81.2
Atru.chr12.1309 Acer truncatum HOM05D006110 ORTHO05D007774 3.1e-271 938.3 591 81.2
Ciclev10000631m.g Citrus clementina HOM05D006110 ORTHO05D007774 7.5e-270 933.7 589 81.0
Duzib106G1787 Durio zibethinus HOM05D006110 ORTHO05D007774 7.5e-270 933.7 605 78.7
Potri.001G031700 Populus trichocarpa HOM05D006110 ORTHO05D007774 5.4e-268 927.5 585 80.9
MSTRG.16978 Avicennia marina HOM05D006110 ORTHO05D007774 9.2e-268 926.8 591 80.2
Potri.003G194000 Populus trichocarpa HOM05D006110 ORTHO05D007774 2.0e-267 925.6 588 79.9
COL.COLO4_06638 Corchorus olitorius HOM05D006110 ORTHO05D007774 3.9e-266 921.4 588 78.9
vmacro13769 Vaccinium macrocarpon HOM05D006110 ORTHO05D007774 1.1e-265 919.8 674 73.3
Sopen01g040330 Solanum pennellii HOM05D006110 ORTHO05D007774 4.3e-265 917.9 591 79.0
CAN.G134.27 Capsicum annuum HOM05D006110 ORTHO05D007774 5.6e-265 917.5 588 79.6
FvH4_7g03810 Fragaria vesca HOM05D006110 ORTHO05D007774 7.3e-265 917.1 590 79.0
FAN03G2625 Fragaria x ananassa HOM05D006110 ORTHO05D007774 7.3e-265 917.1 590 78.6
Solyc01g096600.4 Solanum lycopersicum HOM05D006110 ORTHO05D007774 7.3e-265 917.1 589 79.1
CANSAT56G0825 Cannabis sativa HOM05D006110 ORTHO05D007774 1.1e-263 913.3 602 77.6
Sed0024249 Sechium edule HOM05D006110 ORTHO05D007774 1.1e-263 913.3 589 79.1
Eucgr.E03954 Eucalyptus grandis HOM05D006110 ORTHO05D007774 5.2e-263 911.0 596 78.9
FAN10G4343 Fragaria x ananassa HOM05D006110 ORTHO05D007774 2.0e-262 909.1 600 77.8
MELO3C022813.2 Cucumis melo HOM05D006110 ORTHO05D007774 3.4e-262 908.3 589 78.6
CsaV3_5G023770 Cucumis sativus L. HOM05D006110 ORTHO05D007774 1.3e-261 906.4 589 78.4
Peaxi162Scf00220g00411 Petunia axillaris HOM05D006110 ORTHO05D007774 4.9e-261 904.4 591 78.2
Haze_02994 Corylus avellana HOM05D006110 ORTHO05D007774 1.6e-259 899.4 591 77.2
Glyma.04G133800 Glycine max HOM05D006110 ORTHO05D007774 2.7e-259 898.7 591 77.8
FAN06G2813 Fragaria x ananassa HOM05D006110 ORTHO05D007774 1.3e-258 896.3 634 73.8
MD14G1003800 Malus domestica HOM05D006110 ORTHO05D007774 8.6e-258 893.6 591 77.7
THA.LOC104826748 Tarenaya hassleriana HOM05D006110 ORTHO05D007774 1.1e-257 893.3 591 76.3
EL10Ac7g17197 Beta vulgaris HOM05D006110 ORTHO05D007774 2.5e-257 892.1 599 75.8
TAR625G0603 Trochodendron aralioides HOM05D006110 ORTHO05D007774 9.5e-257 890.2 597 76.9
Phvul.005G004500 Phaseolus vulgaris HOM05D006110 ORTHO05D007774 2.8e-256 888.6 587 77.3
ECA233G5267 Erigeron canadensis HOM05D006110 ORTHO05D007774 3.6e-256 888.3 594 76.9
VMungo1080G0231 Vigna mungo HOM05D006110 ORTHO05D007774 4.7e-256 887.9 591 77.3
Lj3g0023685 Lotus japonicus HOM05D006110 ORTHO05D007774 7.6e-254 880.6 591 76.6
arahy.Tifrunner.gnm1.ann1.Y0U2QZ Arachis hypogaea HOM05D006110 ORTHO05D007774 9.9e-254 880.2 591 76.6
Psat5g221960 Pisum sativum HOM05D006110 ORTHO05D007774 9.9e-254 880.2 592 76.0
arahy.Tifrunner.gnm1.ann1.P4BN3A Arachis hypogaea HOM05D006110 ORTHO05D007774 2.4e-252 875.5 591 76.1
Gohir.A05G399300 Gossypium hirsutum HOM05D006110 ORTHO05D007774 5.4e-252 874.4 590 75.6
TPR.G7074 Trifolium pratense HOM05D006110 ORTHO05D007774 7.1e-252 874.0 591 75.5
Sc17g0003940 Simmondsia chinensis HOM05D006110 ORTHO05D007774 9.2e-252 873.6 549 79.2
Gorai.012G019300 Gossypium raimondii HOM05D006110 ORTHO05D007774 3.5e-251 871.7 590 75.4
HanXRQChr02g0048711 Helianthus annuus HOM05D006110 ORTHO05D007774 3.9e-250 868.2 607 74.3
Lsat_1_v5_gn_6_13001 Lactuca sativa HOM05D006110 ORTHO05D007774 1.1e-249 866.7 531 81.4
CARHR203490 Cardamine hirsuta HOM05D006110 ORTHO05D007774 6.8e-247 857.4 597 74.2
Gohir.D04G016600 Gossypium hirsutum HOM05D006110 ORTHO05D007774 2.0e-246 855.9 584 74.8
Migut.B01193 Erythranthe guttata HOM05D006110 ORTHO05D007774 2.2e-245 852.4 537 79.9
AL6G20270 Arabidopsis lyrata HOM05D006110 ORTHO05D007774 3.8e-245 851.7 596 73.5
AT5G09860 Arabidopsis thaliana HOM05D006110 ORTHO05D007774 4.9e-245 851.3 598 73.2
Sabra01G0022800 Salix brachista HOM05D006110 ORTHO05D007774 9.3e-244 847.0 750 62.3
PGR031G3177 Punica granatum HOM05D006110 ORTHO05D007774 1.6e-243 846.3 571 75.1
MBI03_g05118_MAGBIO Magnolia biondii HOM05D006110 ORTHO05D007774 7.8e-243 844.0 592 72.8
Aa31LG1G21560 Aethionema arabicum HOM05D006110 ORTHO05D007774 3.0e-242 842.0 591 72.6
COL.COLO4_19610 Corchorus olitorius HOM05D006110 ORTHO05D007774 5.1e-242 841.3 612 71.4
Carub.0006s0829 Capsella rubella HOM05D006110 ORTHO05D007774 4.3e-241 838.2 596 72.3
Nn8g38623 Nelumbo nucifera HOM05D006110 ORTHO05D007774 2.8e-240 835.5 607 71.8
Lalb_Chr20g0109671 Lupinus albus HOM05D006110 ORTHO05D007774 3.1e-239 832.0 595 73.9
Lalb_Chr20g0109811 Lupinus albus HOM05D006110 ORTHO05D007774 9.0e-239 830.5 595 73.9
Sp6g33550 Schrenkiella parvula HOM05D006110 ORTHO05D007774 1.5e-238 829.7 591 72.3
ATR0618G428 Amborella trichopoda HOM05D006110 ORTHO05D007774 7.6e-238 827.4 583 72.4
Aqoxy3G04239 Aquilegia oxysepala HOM05D006110 ORTHO05D007774 2.2e-237 825.9 586 72.4
PSO782G1399 Papaver somniferum HOM05D006110 ORTHO05D007774 3.2e-236 822.0 584 72.1
PSO063G0799 Papaver somniferum HOM05D006110 ORTHO05D007774 4.2e-236 821.6 589 72.2
BcaB05g21524 Brassica carinata HOM05D006110 ORTHO05D007774 9.3e-236 820.5 594 70.5
A02p00200 Brassica napus HOM05D006110 ORTHO05D007774 3.5e-235 818.5 608 69.9
Nitab4.5_0002838g0090 Nicotiana tabacum HOM05D006110 ORTHO05D007774 8.7e-234 813.9 512 80.7
Nn3g19142 Nelumbo nucifera HOM05D006110 ORTHO05D007774 1.3e-232 810.1 510 78.4
C02p04120 Brassica napus HOM05D006110 ORTHO05D007774 2.1e-232 809.3 616 68.2
BraA02t05004Z Brassica rapa HOM05D006110 ORTHO05D007774 1.1e-231 807.0 615 68.0
BolC2t06374H Brassica oleracea HOM05D006110 ORTHO05D007774 1.4e-231 806.6 620 67.7
Thhalv10013059m.g Eutrema salsugineum HOM05D006110 ORTHO05D007774 9.0e-231 803.9 595 71.1
BcaC03g13281 Brassica carinata HOM05D006110 ORTHO05D007774 4.3e-225 785.0 600 67.7
CDE05G1199 Ceratophyllum demersum HOM05D006110 ORTHO05D007774 4.3e-225 785.0 586 69.6
AUR62033702 Chenopodium quinoa HOM05D006110 ORTHO05D007774 5.6e-225 784.6 714 60.2
Oeu014626.1 Olea europaea HOM05D006110 ORTHO05D007774 9.0e-223 777.3 497 79.9
SalBow5G1256 Salvia bowleyana HOM05D006110 ORTHO05D007774 6.5e-221 771.2 597 70.2
SGA_v2.0_scaffold342G49409 Striga asiatica HOM05D006110 ORTHO05D007774 8.4e-221 770.8 639 66.2
Ah.08g212940 Amaranthus hybridus HOM05D006110 ORTHO05D007774 4.6e-219 765.0 594 67.7
Os03g0110400 Oryza sativa ssp. japonica HOM05D006110 ORTHO05D007774 3.9e-218 761.9 607 65.9
Zm00001eb000780 Zea mays HOM05D006110 ORTHO05D007774 3.9e-218 761.9 532 72.4
unitig_26.g9755 Utricularia gibba HOM05D006110 ORTHO05D007774 1.9e-209 733.0 570 69.1
Thecc.10G142600 Theobroma cacao HOM05D006110 ORTHO05D007774 6.1e-203 711.4 447 79.6
SMO134G0202 Selaginella moellendorffii HOM05D006110 ORTHO05D007774 3.4e-198 695.7 524 66.8
AUR62036785 Chenopodium quinoa HOM05D006110 ORTHO05D007774 1.1e-196 690.6 588 63.6
Mapoly0007s0076 Marchantia polymorpha HOM05D006110 ORTHO05D007774 4.7e-195 685.3 592 60.6
AagrBONN_evm.TU.Sc2ySwM_228.3473 Anthoceros agrestis HOM05D006110 ORTHO05D007774 1.2e-190 670.6 599 60.3
Cc00_g06110 Coffea canephora HOM05D006110 ORTHO05D007774 3.5e-190 669.1 448 76.6
AagrBONN_evm.TU.Sc2ySwM_228.3474 Anthoceros agrestis HOM05D006110 ORTHO05D007774 8.8e-186 654.4 579 61.3
Pp3c2_4660 Physcomitrium patens HOM05D006110 ORTHO05D007774 8.5e-181 637.9 556 60.6
ClCG05G014210 Citrullus lanatus HOM05D006110 ORTHO05D007774 4.7e-171 605.5 460 69.8
TPR.G1403 Trifolium pratense HOM05D006110 ORTHO05D007774 9.8e-153 544.7 388 72.4
DCAR_022366 Daucus carota HOM05D006110 ORTHO05D007774 1.0e-149 534.6 344 77.9
Lj9C658T8 Lonicera japonica HOM05D006110 ORTHO05D007774 2.4e-138 496.9 286 88.1
HPP92_005051 Vanilla planifolia HOM05D006110 ORTHO05D007774 4.4e-129 466.1 307 75.9
SEGI_32708 Sequoiadendron giganteum HOM05D006110 ORTHO05D007774 8.7e-125 451.8 322 71.4
CBR_g45491 Chara braunii HOM05D006110 ORTHO05D007774 3.6e-123 446.4 549 45.9
Cpa.g.sc51.83 Carica papaya HOM05D006110 ORTHO05D007774 1.8e-122 444.1 270 79.3
Nitab4.5_0004168g0080 Nicotiana tabacum HOM05D006110 ORTHO05D007774 1.3e-117 427.9 351 67.8
Hund12548 Selenicereus undatus HOM05D006110 ORTHO05D007774 4.5e-105 386.3 252 74.6
Hund24435 Selenicereus undatus HOM05D006110 ORTHO05D007774 1.0e-88 332.0 244 70.9
HPP92_005075 Vanilla planifolia HOM05D006110 ORTHO05D007774 1.4e-87 328.2 210 73.3
Lj9A658T58 Lonicera japonica HOM05D006110 ORTHO05D007774 9.1e-82 308.9 205 77.6
Sed0017067 Sechium edule HOM05D006110 ORTHO05D007774 9.4e-79 298.9 173 85.5
CANSAT01G0073 Cannabis sativa HOM05D006110 ORTHO05D007774 6.5e-72 276.2 178 75.8
PRCOL_00001172 Prasinoderma coloniale HOM05D006110 ORTHO05D007774 2.0e-65 254.6 448 36.4
Cc00_g06120 Coffea canephora HOM05D006110 ORTHO05D007774 7.7e-57 226.1 133 84.2
CANSAT01G1515 Cannabis sativa HOM05D006110 ORTHO05D007774 2.0e-52 211.5 108 87.0
SEGI_24206 Sequoiadendron giganteum HOM05D006110 ORTHO05D007774 7.5e-52 209.5 190 59.5
CDE05G0354 Ceratophyllum demersum HOM05D006110 ORTHO05D007774 1.5e-47 195.3 363 39.1
CDE05G3545 Ceratophyllum demersum HOM05D006110 ORTHO05D007774 2.5e-47 194.5 137 72.3
Oeu014625.1 Olea europaea HOM05D006110 ORTHO05D007774 2.0e-44 184.9 136 74.3
Actinidia06221 Actinidia chinensis HOM05D006110 ORTHO05D007774 6.6e-40 169.9 157 64.3
ClCG05G014240 Citrullus lanatus HOM05D006110 ORTHO05D007774 1.1e-37 162.5 172 58.1
SEGI_05467 Sequoiadendron giganteum HOM05D006110 ORTHO05D007774 7.0e-34 149.8 90 71.1
Lj9C658T10 Lonicera japonica HOM05D006110 ORTHO05D007774 1.3e-24 119.0 66 80.3
Cre16.g695300 Chlamydomonas reinhardtii HOM05D006110 ORTHO05D007774 3.8e-19 100.9 270 29.3
vmacro23293 Vaccinium macrocarpon HOM05D000003 ORTHO05D000006 3.9e-08 64.3 111 40.5
QL04p021235 Quercus lobata HOM05D006110 ORTHO05D011410 1.9e-07 62.0 55 67.3


User provided reference genes

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