Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009402 Camellia sinensis var. sinensis HOM05D002170 ORTHO05D007478 2.6e-247 858.2 423 100.0
CSS0042449 Camellia sinensis var. sinensis HOM05D002170 ORTHO05D007478 1.7e-246 855.5 423 99.8
Rhsim08G0127800 Rhododendron simsii HOM05D002170 ORTHO05D007478 2.4e-216 755.4 431 87.9
vmacro17769 Vaccinium macrocarpon HOM05D002170 ORTHO05D007478 4.7e-212 741.1 433 86.6
CANSAT35G0706 Cannabis sativa HOM05D002170 ORTHO05D007478 1.0e-211 740.0 424 85.6
Prupe.5G236800 Prunus persica HOM05D002170 ORTHO05D007478 1.0e-211 740.0 428 87.6
Gohir.A09G175200 Gossypium hirsutum HOM05D002170 ORTHO05D007478 1.2e-210 736.5 423 85.6
Gorai.006G191200 Gossypium raimondii HOM05D002170 ORTHO05D007478 1.2e-210 736.5 423 85.6
TAR629G0118 Trochodendron aralioides HOM05D002170 ORTHO05D007478 1.2e-210 736.5 425 85.6
Actinidia09052 Actinidia chinensis HOM05D002170 ORTHO05D007478 2.6e-210 735.3 425 86.8
Thecc.03G062200 Theobroma cacao HOM05D002170 ORTHO05D007478 4.4e-210 734.6 429 85.8
Hma1.2p1_0471F.1_g159440 Hydrangea macrophylla HOM05D002170 ORTHO05D007478 5.7e-210 734.2 431 85.6
Gohir.D09G169700 Gossypium hirsutum HOM05D002170 ORTHO05D007478 2.8e-209 731.9 423 85.1
MD14G1239300 Malus domestica HOM05D002170 ORTHO05D007478 2.8e-209 731.9 426 86.2
COL.COLO4_18962 Corchorus olitorius HOM05D002170 ORTHO05D005003 4.9e-209 731.1 430 86.3
Lj2g0009559 Lotus japonicus HOM05D002170 ORTHO05D007478 8.3e-209 730.3 426 86.6
Haze_18913 Corylus avellana HOM05D002170 ORTHO05D007478 2.4e-208 728.8 426 86.2
Cfa020634 Carpinus fangiana HOM05D002170 ORTHO05D007478 5.4e-208 727.6 427 86.4
Glyma.07G105400 Glycine max HOM05D002170 ORTHO05D007478 1.2e-207 726.5 432 84.3
RcHm_v2.0_Chr7g0177971 Rosa chinensis HOM05D002170 ORTHO05D007478 1.2e-207 726.5 428 85.0
QL10p031496 Quercus lobata HOM05D002170 ORTHO05D007478 2.0e-207 725.7 425 84.7
TWI81G0098 Tripterygium wilfordii HOM05D002170 ORTHO05D007478 7.8e-207 723.8 424 84.9
Ciclev10020301m.g Citrus clementina HOM05D002170 ORTHO05D007478 1.0e-206 723.4 424 84.7
Eucgr.K02286 Eucalyptus grandis HOM05D002170 ORTHO05D007478 1.3e-206 723.0 428 84.8
MD06G1232500 Malus domestica HOM05D002170 ORTHO05D007478 1.3e-206 723.0 426 85.0
Duzib068G1477 Durio zibethinus HOM05D002170 ORTHO05D007478 1.7e-206 722.6 393 89.6
Sc04g0004500 Simmondsia chinensis HOM05D002170 ORTHO05D007478 3.8e-206 721.5 425 84.9
arahy.Tifrunner.gnm1.ann1.DTQ5EB Arachis hypogaea HOM05D002170 ORTHO05D007478 5.0e-206 721.1 430 84.4
PGR044G0130 Punica granatum HOM05D002170 ORTHO05D007478 5.0e-206 721.1 428 84.8
Manes.06G002900 Manihot esculenta HOM05D002170 ORTHO05D007478 8.6e-206 720.3 428 84.3
CiPaw.16G097200 Carya illinoinensis HOM05D002170 ORTHO05D007478 1.9e-205 719.2 426 85.9
Glyma.09G172700 Glycine max HOM05D002170 ORTHO05D007478 1.9e-205 719.2 432 83.8
Cpa.g.sc3.360 Carica papaya HOM05D002170 ORTHO05D007478 2.5e-205 718.8 430 83.3
Lalb_Chr14g0370711 Lupinus albus HOM05D002170 ORTHO05D007478 3.3e-205 718.4 432 83.8
FvH4_5g17680 Fragaria vesca HOM05D002170 ORTHO05D007478 4.3e-205 718.0 432 83.1
Duzib084G0411 Durio zibethinus HOM05D002170 ORTHO05D007478 5.6e-205 717.6 393 89.6
Migut.D01219 Erythranthe guttata HOM05D002170 ORTHO05D007478 5.6e-205 717.6 426 83.8
FAN18G3495 Fragaria x ananassa HOM05D002170 ORTHO05D007478 5.6e-205 717.6 432 82.9
arahy.Tifrunner.gnm1.ann1.U6RNCV Arachis hypogaea HOM05D002170 ORTHO05D007478 9.5e-205 716.8 430 84.2
ClCG04G010450 Citrullus lanatus HOM05D002170 ORTHO05D007478 1.2e-204 716.5 394 89.1
Potri.015G030600 Populus trichocarpa HOM05D002170 ORTHO05D007478 1.6e-204 716.1 426 84.3
MELO3C002149.2 Cucumis melo HOM05D002170 ORTHO05D007478 3.6e-204 714.9 394 89.1
Sabra15G0025500 Salix brachista HOM05D002170 ORTHO05D007478 4.7e-204 714.5 426 84.3
SalBow5G3655 Salvia bowleyana HOM05D002170 ORTHO05D007478 4.7e-204 714.5 423 83.9
Ca_25357_v3 Cicer arietinum L. HOM05D002170 ORTHO05D007478 6.1e-204 714.1 428 83.6
CsaV3_1G007330 Cucumis sativus L. HOM05D002170 ORTHO05D007478 6.1e-204 714.1 394 89.1
Phvul.004G148000 Phaseolus vulgaris HOM05D002170 ORTHO05D007478 6.1e-204 714.1 426 83.8
PSO339G1858 Papaver somniferum HOM05D002170 ORTHO05D007478 1.4e-203 713.0 426 81.9
PSO384G2182 Papaver somniferum HOM05D002170 ORTHO05D007478 1.4e-203 713.0 426 81.9
FAN08G0558 Fragaria x ananassa HOM05D002170 ORTHO05D007478 2.3e-203 712.2 432 82.6
Oeu023513.1 Olea europaea HOM05D002170 ORTHO05D007478 2.3e-203 712.2 432 83.6
FAN04G0031 Fragaria x ananassa HOM05D002170 ORTHO05D007478 4.0e-203 711.4 432 82.2
TPR.G22320 Trifolium pratense HOM05D002170 ORTHO05D007478 5.2e-203 711.1 427 83.6
Atru.BG.197.p Acer truncatum HOM05D002170 ORTHO05D007478 1.5e-202 709.5 378 91.5
Aqoxy3G04073 Aquilegia oxysepala HOM05D002170 ORTHO05D007478 1.5e-202 709.5 431 81.7
MSTRG.9351 Avicennia marina HOM05D002170 ORTHO05D007478 1.5e-202 709.5 393 88.3
ECA232G0406 Erigeron canadensis HOM05D002170 ORTHO05D007478 3.4e-202 708.4 401 86.5
Medtr6g071210 Medicago truncatula HOM05D002170 ORTHO05D007478 3.4e-202 708.4 394 88.3
THA.LOC104820334 Tarenaya hassleriana HOM05D002170 ORTHO05D007478 4.4e-202 708.0 395 87.1
Cc04_g09360 Coffea canephora HOM05D002170 ORTHO05D007478 2.2e-201 705.7 396 87.9
Lalb_Chr22g0353421 Lupinus albus HOM05D002170 ORTHO05D007478 2.9e-201 705.3 397 87.7
PGSC0003DMG400033683 Solanum tuberosum HOM05D002170 ORTHO05D007478 2.9e-201 705.3 402 87.1
Sopen03g028630 Solanum pennellii HOM05D002170 ORTHO05D007478 3.7e-201 704.9 402 86.8
GSVIVG01008478001 Vitis vinifera HOM05D002170 ORTHO05D007478 4.9e-201 704.5 368 94.0
Sed0008892 Sechium edule HOM05D002170 ORTHO05D007478 6.4e-201 704.1 427 83.6
EL10Ac2g03531 Beta vulgaris HOM05D002170 ORTHO05D007478 8.3e-201 703.7 394 88.6
Solyc03g097910.4 Solanum lycopersicum HOM05D002170 ORTHO05D007478 8.3e-201 703.7 402 86.8
CDE06G2490 Ceratophyllum demersum HOM05D002170 ORTHO05D007478 1.1e-200 703.4 420 81.9
HanXRQChr16g0511571 Helianthus annuus HOM05D002170 ORTHO05D007478 4.1e-200 701.4 390 87.7
CAN.G637.44 Capsicum annuum HOM05D002170 ORTHO05D007478 5.4e-200 701.0 431 82.1
HanXRQChr15g0492101 Helianthus annuus HOM05D002170 ORTHO05D007478 1.2e-199 699.9 390 88.2
DCAR_003532 Daucus carota HOM05D002170 ORTHO05D007478 5.9e-199 697.6 425 81.2
Ah.16g108010 Amaranthus hybridus HOM05D002170 ORTHO05D007478 1.7e-198 696.0 394 87.3
Hund22449 Selenicereus undatus HOM05D002170 ORTHO05D007478 1.7e-198 696.0 395 87.6
A05p32010 Brassica napus HOM05D002170 ORTHO05D007478 1.1e-197 693.3 396 85.1
SEGI_10571 Sequoiadendron giganteum HOM05D002170 ORTHO05D007478 1.1e-197 693.3 393 86.0
Lj9C416G6 Lonicera japonica HOM05D002170 ORTHO05D007478 1.5e-197 693.0 381 87.9
Carub.0003s1752 Capsella rubella HOM05D002170 ORTHO05D007478 1.9e-197 692.6 394 84.8
CARHR093160 Cardamine hirsuta HOM05D002170 ORTHO05D007478 1.9e-197 692.6 386 85.8
C05p48530 Brassica napus HOM05D002170 ORTHO05D007478 3.3e-197 691.8 396 84.8
AUR62041617 Chenopodium quinoa HOM05D002170 ORTHO05D007478 2.1e-196 689.1 423 81.1
BolC5t33589H Brassica oleracea HOM05D002170 ORTHO05D007478 3.6e-196 688.3 396 84.6
CiPaw.15G147300 Carya illinoinensis HOM05D002170 ORTHO05D007478 6.2e-196 687.6 368 91.3
Sp3g15930 Schrenkiella parvula HOM05D002170 ORTHO05D007478 6.2e-196 687.6 393 84.2
Thhalv10020777m.g Eutrema salsugineum HOM05D002170 ORTHO05D007478 8.0e-196 687.2 385 86.0
BraA05t22032Z Brassica rapa HOM05D002170 ORTHO05D007478 3.1e-195 685.3 398 84.2
Lsat_1_v5_gn_0_10461 Lactuca sativa HOM05D002170 ORTHO05D007478 6.8e-195 684.1 386 85.5
HPP92_007961 Vanilla planifolia HOM05D002170 ORTHO05D007478 2.6e-194 682.2 416 81.2
Peaxi162Scf00171g01030 Petunia axillaris HOM05D002170 ORTHO05D007478 7.5e-194 680.6 429 79.5
BcaC09g48741 Brassica carinata HOM05D002170 ORTHO05D007478 2.9e-193 678.7 393 84.5
A01p36570 Brassica napus HOM05D002170 ORTHO05D007478 2.9e-193 678.7 393 84.5
BcaNung05883 Brassica carinata HOM05D002170 ORTHO05D007478 4.9e-193 677.9 397 83.6
C01p46400 Brassica napus HOM05D002170 ORTHO05D007478 1.4e-192 676.4 393 84.2
BcaB04g20814 Brassica carinata HOM05D002170 ORTHO05D007478 2.4e-192 675.6 395 83.8
AT3G17810 Arabidopsis thaliana HOM05D002170 ORTHO05D007478 3.2e-192 675.2 386 83.9
AL3G30970 Arabidopsis lyrata HOM05D002170 ORTHO05D007478 4.1e-192 674.9 386 83.7
BcaB04g18965 Brassica carinata HOM05D002170 ORTHO05D007478 4.1e-192 674.9 395 83.5
BolC1t04600H Brassica oleracea HOM05D002170 ORTHO05D007478 7.8e-191 670.6 393 83.7
Zm00001eb253890 Zea mays HOM05D002170 ORTHO05D007478 1.3e-190 669.8 409 81.9
Dinv05998 Davidia involucrata HOM05D002170 ORTHO05D007478 3.0e-190 668.7 376 88.3
BraA01t03721Z Brassica rapa HOM05D002170 ORTHO05D007478 5.0e-190 667.9 394 83.5
Os02g0736400 Oryza sativa ssp. japonica HOM05D002170 ORTHO05D007478 6.6e-190 667.5 388 84.0
Atru.chr9.1597 Acer truncatum HOM05D002170 ORTHO05D007478 1.9e-189 666.0 363 90.1
Aa31LG8G4690 Aethionema arabicum HOM05D002170 ORTHO05D007478 3.6e-188 661.8 458 73.1
ATR0118G019 Amborella trichopoda HOM05D002170 ORTHO05D007478 3.6e-188 661.8 398 80.7
Nitab4.5_0006581g0020 Nicotiana tabacum HOM05D002170 ORTHO05D007478 6.8e-187 657.5 399 82.7
AUR62036004 Chenopodium quinoa HOM05D002170 ORTHO05D007478 1.2e-186 656.8 368 87.8
Nitab4.5_0000430g0180 Nicotiana tabacum HOM05D002170 ORTHO05D007478 1.2e-186 656.8 400 82.5
AagrBONN_evm.TU.Sc2ySwM_362.1270 Anthoceros agrestis HOM05D002170 ORTHO05D007478 1.9e-181 639.4 421 72.7
Pp3c20_21870 Physcomitrium patens HOM05D002170 ORTHO05D007478 1.9e-181 639.4 389 78.7
Pp3c23_13670 Physcomitrium patens HOM05D002170 ORTHO05D007478 5.6e-181 637.9 397 77.1
SMO356G0689 Selaginella moellendorffii HOM05D002170 ORTHO05D007478 1.9e-176 622.9 379 79.2
Psat1g029560 Pisum sativum HOM05D002170 ORTHO05D007478 7.8e-175 617.5 343 88.6
Mapoly0033s0018 Marchantia polymorpha HOM05D002170 ORTHO05D007478 1.9e-173 612.8 378 78.6
MBI19_g09384_MAGBIO Magnolia biondii HOM05D003263 ORTHO05D004801 1.1e-160 570.5 335 83.9
BcaC01g03730 Brassica carinata HOM05D002170 ORTHO05D007478 1.9e-160 569.7 387 74.7
CBR_g39071 Chara braunii HOM05D002170 ORTHO05D007478 5.4e-160 568.2 378 71.2
SHI19063 Sapria himalayana HOM05D002170 ORTHO05D007478 3.0e-158 562.4 329 82.1
MCO10G163 Micromonas commoda HOM05D002170 ORTHO05D007478 3.9e-158 562.0 378 71.2
CDE04G1365 Ceratophyllum demersum HOM05D002170 ORTHO05D007478 1.1e-155 553.9 354 77.1
PRCOL_00005290 Prasinoderma coloniale HOM05D002170 ORTHO05D007478 1.9e-152 543.1 369 72.6
Cre13.g578750 Chlamydomonas reinhardtii HOM05D002170 ORTHO05D007478 1.3e-145 520.4 378 65.9
unitig_27.g25082 Utricularia gibba HOM05D002170 ORTHO05D007478 2.2e-140 503.1 288 85.1
BolC3t17203H Brassica oleracea HOM05D002170 ORTHO05D007478 5.3e-131 471.9 299 78.6
C03p49210 Brassica napus HOM05D002170 ORTHO05D007478 4.5e-130 468.8 410 61.5
Potri.012G043300 Populus trichocarpa HOM05D002170 ORTHO05D007478 3.8e-113 412.5 267 79.0
Oeu016182.1 Olea europaea HOM05D002170 ORTHO05D007478 9.7e-109 397.9 280 73.6
Haze_26546 Corylus avellana HOM05D002170 ORTHO05D007478 1.2e-71 274.6 337 43.6
Haze_27328 Corylus avellana HOM05D002170 ORTHO05D007478 2.3e-70 270.4 337 43.0
SGA_v2.0_scaffold40G15643 Striga asiatica HOM05D002170 ORTHO05D007478 4.0e-70 269.6 181 75.7
SGA_v2.0_scaffold1356G53925 Striga asiatica HOM05D002170 ORTHO05D007478 2.6e-53 213.8 118 89.0
Solyc02g044040.3 Solanum lycopersicum HOM05D002170 ORTHO05D390875 3.6e-47 193.4 113 80.5
BraA03t13196Z Brassica rapa HOM05D002170 ORTHO05D023792 2.1e-31 141.0 84 79.8
Phvul.008G096200 Phaseolus vulgaris HOM05D002170 ORTHO05D023792 2.1e-31 141.0 84 79.8
A03p40410 Brassica napus HOM05D002170 ORTHO05D023792 1.8e-30 137.9 84 77.4
Psat3g071120 Pisum sativum HOM05D002170 ORTHO05D327785 7.6e-29 132.5 125 61.6
Ca_22557_v3 Cicer arietinum L. HOM05D002170 ORTHO05D148971 5.7e-24 116.3 57 91.2
unitig_27.g25081 Utricularia gibba HOM05D002170 ORTHO05D007478 1.1e-22 112.1 86 66.3
MSTRG.4628 Avicennia marina HOM05D002170 ORTHO05D023792 6.9e-22 109.4 79 70.9
MD05G1052900 Malus domestica HOM05D002170 ORTHO05D000222 2.5e-16 90.9 56 80.4
Pp3s46_240 Physcomitrium patens HOM05D003658 ORTHO05D004457 2.2e-15 87.8 195 31.3
Ca_03420_v3 Cicer arietinum L. HOM05D002170 ORTHO05D148646 6.1e-10 69.7 40 77.5
BcaB04g18967 Brassica carinata HOM05D002170 ORTHO05D023792 4.4e-08 63.5 65 55.4


User provided reference genes

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