Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008621 Camellia sinensis var. sinensis HOM05D002024 ORTHO05D004352 1.0e-189 666.8 392 100.0
CSS0030941 Camellia sinensis var. sinensis HOM05D002024 ORTHO05D004352 1.2e-169 600.1 366 98.6
CSS0014390 Camellia sinensis var. sinensis HOM05D002024 ORTHO05D004352 1.1e-114 417.5 387 74.4
Actinidia03934 Actinidia chinensis HOM05D002024 ORTHO05D004352 2.2e-83 313.5 390 58.7
Rhsim03G0051100 Rhododendron simsii HOM05D002024 ORTHO05D004352 4.0e-80 302.8 405 54.1
vmacro07561 Vaccinium macrocarpon HOM05D002024 ORTHO05D004352 2.8e-78 296.6 403 52.1
Hma1.2p1_0106F.1_g051130 Hydrangea macrophylla HOM05D002024 ORTHO05D004352 1.2e-49 201.4 380 42.6
QL07p017660 Quercus lobata HOM05D002024 ORTHO05D004352 2.0e-47 194.1 384 40.6
GSVIVG01029953001 Vitis vinifera HOM05D002024 ORTHO05D004352 2.2e-46 190.7 411 38.4
TAR623G1628 Trochodendron aralioides HOM05D002024 ORTHO05D004352 2.9e-46 190.3 409 38.4
Gorai.007G256900 Gossypium raimondii HOM05D002024 ORTHO05D004352 1.6e-44 184.5 401 35.4
Duzib128G1716 Durio zibethinus HOM05D002024 ORTHO05D004352 2.0e-44 184.1 401 37.2
Gohir.A11G231400 Gossypium hirsutum HOM05D002024 ORTHO05D004352 2.0e-44 184.1 401 35.4
Migut.J00772 Erythranthe guttata HOM05D002024 ORTHO05D004352 1.3e-43 181.4 292 45.5
COL.COLO4_28619 Corchorus olitorius HOM05D002024 ORTHO05D004352 1.7e-43 181.0 409 36.9
Gohir.D11G242700 Gossypium hirsutum HOM05D002024 ORTHO05D004352 6.6e-43 179.1 401 34.7
Thecc.05G244100 Theobroma cacao HOM05D002024 ORTHO05D004352 1.2e-41 174.9 410 35.6
Duzib177G0567 Durio zibethinus HOM05D002024 ORTHO05D004352 2.1e-41 174.1 406 35.5
Haze_20441 Corylus avellana HOM05D002024 ORTHO05D004352 3.6e-41 173.3 412 37.6
Ciclev10018753m.g Citrus clementina HOM05D002024 ORTHO05D004352 1.2e-39 168.3 379 36.1
Lalb_Chr02g0157321 Lupinus albus HOM05D002024 ORTHO05D004352 1.5e-39 167.9 282 40.4
Cpa.g.sc161.19 Carica papaya HOM05D002024 ORTHO05D004352 2.0e-39 167.5 396 36.9
Nitab4.5_0000098g0220 Nicotiana tabacum HOM05D002024 ORTHO05D004352 2.0e-39 167.5 371 42.9
Cfa017696 Carpinus fangiana HOM05D002024 ORTHO05D004352 2.6e-39 167.2 409 36.4
Prupe.7G010800 Prunus persica HOM05D002024 ORTHO05D004352 2.6e-39 167.2 402 35.6
Duzib106G0860 Durio zibethinus HOM05D002024 ORTHO05D004352 1.4e-37 161.4 403 33.5
MD12G1009000 Malus domestica HOM05D002024 ORTHO05D004352 1.4e-37 161.4 390 35.4
MD14G1006500 Malus domestica HOM05D002024 ORTHO05D004352 1.9e-37 161.0 392 35.7
Cc06_g17310 Coffea canephora HOM05D002024 ORTHO05D004352 4.1e-37 159.8 336 40.5
Potri.013G062800 Populus trichocarpa HOM05D002024 ORTHO05D004352 4.1e-37 159.8 383 37.1
Eucgr.A02131 Eucalyptus grandis HOM05D002024 ORTHO05D004352 5.4e-37 159.5 374 35.6
TWI60G0427 Tripterygium wilfordii HOM05D002024 ORTHO05D004352 5.4e-37 159.5 282 41.8
CANSAT78G1633 Cannabis sativa HOM05D002024 ORTHO05D004352 3.5e-36 156.8 366 36.6
Nitab4.5_0005685g0010 Nicotiana tabacum HOM05D002024 ORTHO05D004352 4.6e-36 156.4 374 43.6
Atru.chr2.1480 Acer truncatum HOM05D002024 ORTHO05D004352 6.0e-36 156.0 401 37.4
arahy.Tifrunner.gnm1.ann1.S92YTY Arachis hypogaea HOM05D002024 ORTHO05D004352 1.7e-35 154.5 297 39.7
Manes.08G154300 Manihot esculenta HOM05D002024 ORTHO05D004352 1.7e-35 154.5 380 37.4
Sabra13G0056000 Salix brachista HOM05D002024 ORTHO05D004352 1.7e-35 154.5 359 37.3
Peaxi162Scf00905g00018 Petunia axillaris HOM05D002024 ORTHO05D004352 2.3e-35 154.1 384 37.0
Lalb_Chr06g0174121 Lupinus albus HOM05D002024 ORTHO05D004352 3.0e-35 153.7 282 36.9
Lj2g0020360 Lotus japonicus HOM05D002024 ORTHO05D004352 3.9e-35 153.3 286 41.6
Aqoxy2G00589 Aquilegia oxysepala HOM05D002024 ORTHO05D004352 5.1e-35 152.9 295 38.6
Ca_25685_v3 Cicer arietinum L. HOM05D002024 ORTHO05D004352 8.6e-35 152.1 290 39.7
VMungo0464G1034 Vigna mungo HOM05D002024 ORTHO05D004352 1.5e-34 151.4 377 34.0
Phvul.004G073900 Phaseolus vulgaris HOM05D002024 ORTHO05D004352 1.9e-34 151.0 324 35.2
Medtr6g027760 Medicago truncatula HOM05D002024 ORTHO05D004352 2.5e-34 150.6 391 33.0
RcHm_v2.0_Chr3g0496311 Rosa chinensis HOM05D002024 ORTHO05D004352 2.5e-34 150.6 374 36.4
arahy.Tifrunner.gnm1.ann1.9M8SYH Arachis hypogaea HOM05D002024 ORTHO05D004352 1.2e-33 148.3 296 38.5
Gorai.013G195500 Gossypium raimondii HOM05D002024 ORTHO05D004352 6.2e-33 146.0 401 32.2
Cc00_g10130 Coffea canephora HOM05D002024 ORTHO05D004352 8.1e-33 145.6 307 39.4
SGA_v2.0_scaffold31G12789 Striga asiatica HOM05D002024 ORTHO05D004352 8.1e-33 145.6 375 35.7
Glyma.17G187400 Glycine max HOM05D002024 ORTHO05D004352 1.1e-32 145.2 367 34.3
Psat1g090200 Pisum sativum HOM05D002024 ORTHO05D004352 1.8e-32 144.4 389 32.9
DCAR_013482 Daucus carota HOM05D002024 ORTHO05D004352 5.2e-32 142.9 344 37.2
Glyma.05G089300 Glycine max HOM05D002024 ORTHO05D004352 3.4e-31 140.2 350 33.7
Potri.019G038701 Populus trichocarpa HOM05D002024 ORTHO05D004352 4.4e-31 139.8 391 35.3
Hund15117 Selenicereus undatus HOM05D002024 ORTHO05D004352 4.4e-31 139.8 386 40.4
AUR62038435 Chenopodium quinoa HOM05D002024 ORTHO05D004352 5.8e-31 139.4 399 40.1
ECA238G4379 Erigeron canadensis HOM05D002024 ORTHO05D004352 1.3e-30 138.3 314 40.8
Gohir.A13G164100 Gossypium hirsutum HOM05D002024 ORTHO05D004352 1.3e-30 138.3 401 32.4
Gohir.D13G167000 Gossypium hirsutum HOM05D002024 ORTHO05D004352 2.9e-30 137.1 400 31.5
FAN26G3161 Fragaria x ananassa HOM05D002024 ORTHO05D004352 1.1e-29 135.2 382 34.3
DCAR_009084 Daucus carota HOM05D002024 ORTHO05D004352 1.4e-29 134.8 284 37.7
TPR.G29868 Trifolium pratense HOM05D002024 ORTHO05D004352 1.4e-29 134.8 395 34.4
FAN19G0777 Fragaria x ananassa HOM05D002024 ORTHO05D004352 3.2e-29 133.7 382 35.3
PGR042G1807 Punica granatum HOM05D002024 ORTHO05D004352 5.4e-29 132.9 376 34.3
FAN23G2178 Fragaria x ananassa HOM05D002024 ORTHO05D004352 1.2e-28 131.7 382 33.0
FvH4_1g28500 Fragaria vesca HOM05D002024 ORTHO05D004352 1.6e-28 131.3 283 38.9
AUR62041184 Chenopodium quinoa HOM05D002024 ORTHO05D004352 6.0e-28 129.4 395 38.0
Gorai.013G113400 Gossypium raimondii HOM05D002024 ORTHO05D004352 7.8e-28 129.0 367 37.3
Sc22g0004540 Simmondsia chinensis HOM05D002024 ORTHO05D004352 3.0e-27 127.1 379 32.7
HanXRQChr07g0197171 Helianthus annuus HOM05D002024 ORTHO05D004352 3.9e-27 126.7 372 32.0
ATR0697G132 Amborella trichopoda HOM05D002024 ORTHO05D004352 5.1e-27 126.3 293 38.9
HanXRQChr14g0453601 Helianthus annuus HOM05D002024 ORTHO05D004352 5.1e-27 126.3 394 33.2
MELO3C008822.2 Cucumis melo HOM05D002024 ORTHO05D004352 4.3e-26 123.2 426 30.5
CsaV3_4G012120 Cucumis sativus L. HOM05D002024 ORTHO05D004352 7.3e-26 122.5 414 34.1
THA.LOC104804880 Tarenaya hassleriana HOM05D002024 ORTHO05D004352 2.8e-25 120.6 288 37.5
PGSC0003DMG400020924 Solanum tuberosum HOM05D002024 ORTHO05D004352 1.4e-24 118.2 369 34.4
EL10Ac5g11731 Beta vulgaris HOM05D002024 ORTHO05D004352 1.8e-24 117.9 419 32.5
Nn6g32382 Nelumbo nucifera HOM05D002024 ORTHO05D004352 5.2e-24 116.3 372 31.5
AT5G35910 Arabidopsis thaliana HOM05D002024 ORTHO05D004352 6.9e-24 115.9 322 31.7
PSO339G0006 Papaver somniferum HOM05D002024 ORTHO05D004352 9.0e-24 115.5 359 29.8
PSO384G0657 Papaver somniferum HOM05D002024 ORTHO05D004352 9.0e-24 115.5 355 29.6
AL7G44760 Arabidopsis lyrata HOM05D002024 ORTHO05D004352 1.2e-23 115.2 285 34.0
Sed0002714 Sechium edule HOM05D002024 ORTHO05D004352 1.2e-23 115.2 345 32.8
Sopen10g008230 Solanum pennellii HOM05D002024 ORTHO05D004352 1.5e-23 114.8 369 33.6
unitig_22.g5158 Utricularia gibba HOM05D002024 ORTHO05D004352 1.5e-23 114.8 308 33.8
Solyc10g018520.1 Solanum lycopersicum HOM05D002024 ORTHO05D004352 2.6e-23 114.0 369 33.1
Aa31LG9G18040 Aethionema arabicum HOM05D002024 ORTHO05D004352 3.4e-23 113.6 299 34.8
Lsat_1_v5_gn_2_103580 Lactuca sativa HOM05D002024 ORTHO05D004352 3.4e-23 113.6 396 37.1
ClCG04G005460 Citrullus lanatus HOM05D002024 ORTHO05D004352 1.3e-22 111.7 410 32.0
Thhalv10003636m.g Eutrema salsugineum HOM05D002024 ORTHO05D004352 4.9e-22 109.8 325 32.3
Sp7g06250 Schrenkiella parvula HOM05D002024 ORTHO05D004352 4.9e-22 109.8 284 34.9
CAN.G809.7 Capsicum annuum HOM05D002024 ORTHO05D004352 1.9e-21 107.8 366 33.1
A05p16460 Brassica napus HOM05D002024 ORTHO05D004352 2.4e-21 107.5 287 34.5
CARHR216730 Cardamine hirsuta HOM05D002024 ORTHO05D004352 5.4e-21 106.3 392 29.8
CDE10G0566 Ceratophyllum demersum HOM05D002024 ORTHO05D004352 4.6e-20 103.2 309 32.4
Ah.02g115700 Amaranthus hybridus HOM05D002024 ORTHO05D004352 6.0e-20 102.8 321 31.5
Carub.0007s3168 Capsella rubella HOM05D002024 ORTHO05D004352 7.8e-20 102.4 286 33.2
MBI05_g12088_MAGBIO Magnolia biondii HOM05D002024 ORTHO05D004352 3.0e-19 100.5 305 32.5
C06p17400 Brassica napus HOM05D002024 ORTHO05D004352 3.9e-19 100.1 385 30.9
BolC6t36935H Brassica oleracea HOM05D002024 ORTHO05D004352 3.9e-19 100.1 385 30.9
CDE10G1351 Ceratophyllum demersum HOM05D002024 ORTHO05D004352 8.7e-19 99.0 311 33.1
BcaB02g08047 Brassica carinata HOM05D002024 ORTHO05D004352 1.1e-18 98.6 283 32.9
THA.LOC104821442 Tarenaya hassleriana HOM05D002024 ORTHO05D004352 1.9e-18 97.8 287 39.7
BcaC08g44316 Brassica carinata HOM05D002024 ORTHO05D004352 3.3e-18 97.1 385 30.6
Gohir.D13G101300 Gossypium hirsutum HOM05D002024 ORTHO05D004352 5.6e-18 96.3 307 36.2
BraA05t20551Z Brassica rapa HOM05D002024 ORTHO05D004352 2.8e-17 94.0 381 29.7
Sed0002639 Sechium edule HOM05D002024 ORTHO05D004352 4.8e-17 93.2 354 33.1
Actinidia37806 Actinidia chinensis HOM05D002024 ORTHO05D004352 1.1e-13 82.0 139 44.6
Gohir.A13G097300 Gossypium hirsutum HOM05D002024 ORTHO05D004352 1.2e-12 78.6 352 31.5
BcaB02g08049 Brassica carinata HOM05D002024 ORTHO05D004352 5.1e-11 73.2 293 30.0
SGA_v2.0_scaffold112G31637 Striga asiatica HOM05D002024 ORTHO05D004352 1.4e-08 65.1 216 32.4
Lj1C1068G14 Lonicera japonica HOM05D002024 ORTHO05D004352 4.0e-08 63.5 398 26.1
HPP92_007980 Vanilla planifolia HOM05D002024 ORTHO05D004352 9.0e-08 62.4 236 27.5


User provided reference genes

Program Settings