Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008403 Camellia sinensis var. sinensis HOM05D023931 ORTHO05D002571 6.4e-168 594.0 294 100.0
CSS0030641 Camellia sinensis var. sinensis HOM05D023931 ORTHO05D002571 5.6e-164 580.9 294 98.0
CSS0038195 Camellia sinensis var. sinensis HOM05D023931 ORTHO05D002571 2.7e-142 508.8 297 89.2
CSS0014062 Camellia sinensis var. sinensis HOM05D023931 ORTHO05D002571 4.6e-57 225.7 234 58.1
CSS0011583 Camellia sinensis var. sinensis HOM05D023931 ORTHO05D002571 1.5e-55 220.7 234 56.4
Prupe.6G159800 Prunus persica HOM05D000113 ORTHO05D002571 7.0e-13 79.0 46 87.0
COL.COLO4_22215 Corchorus olitorius HOM05D000113 ORTHO05D002571 9.1e-13 78.6 46 87.0
CSS0000469 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D002571 1.6e-12 77.8 45 88.9
MD06G1200100 Malus domestica HOM05D000113 ORTHO05D002571 2.0e-12 77.4 46 84.8
MD07G1285300 Malus domestica HOM05D000113 ORTHO05D002571 2.0e-12 77.4 46 84.8
MD08G1042900 Malus domestica HOM05D000113 ORTHO05D002571 2.0e-12 77.4 46 84.8
QL10p018828 Quercus lobata HOM05D000113 ORTHO05D002571 2.0e-12 77.4 49 83.7
Thecc.03G097900 Theobroma cacao HOM05D000113 ORTHO05D002571 2.0e-12 77.4 46 87.0
GSVIVG01010800001 Vitis vinifera HOM05D000432 ORTHO05D000320 2.0e-12 77.4 64 67.2
Gohir.A12G181200 Gossypium hirsutum HOM05D000113 ORTHO05D002571 2.6e-12 77.0 45 88.9
Gohir.D12G183900 Gossypium hirsutum HOM05D000113 ORTHO05D002571 2.6e-12 77.0 45 88.9
Oeu008272.2 Olea europaea HOM05D000113 ORTHO05D002571 2.6e-12 77.0 45 88.9
Prupe.5G201700 Prunus persica HOM05D000113 ORTHO05D002571 3.5e-12 76.6 46 84.8
Actinidia19008 Actinidia chinensis HOM05D000113 ORTHO05D002571 4.5e-12 76.3 49 81.6
Cfa019308 Carpinus fangiana HOM05D000113 ORTHO05D002571 4.5e-12 76.3 49 81.6
Duzib205G1857 Durio zibethinus HOM05D000113 ORTHO05D002571 4.5e-12 76.3 45 88.9
Potri.015G008700 Populus trichocarpa HOM05D000113 ORTHO05D002571 4.5e-12 76.3 45 86.7
Sabra15G0050000 Salix brachista HOM05D000113 ORTHO05D002571 4.5e-12 76.3 45 86.7
Sabra15G0050100 Salix brachista HOM05D000113 ORTHO05D002571 4.5e-12 76.3 45 86.7
Sabra15G0050300 Salix brachista HOM05D000113 ORTHO05D002571 4.5e-12 76.3 45 86.7
Sabra15G0050400 Salix brachista HOM05D000113 ORTHO05D002571 4.5e-12 76.3 45 86.7
Sabra15G0070200 Salix brachista HOM05D000113 ORTHO05D002571 4.5e-12 76.3 45 86.7
Sabra15G0072600 Salix brachista HOM05D000113 ORTHO05D002571 4.5e-12 76.3 45 86.7
SalBow7G4123 Salvia bowleyana HOM05D000113 ORTHO05D002571 4.5e-12 76.3 49 81.6
Cc04_g15020 Coffea canephora HOM05D000113 ORTHO05D002571 5.9e-12 75.9 45 86.7
Gorai.008G197200 Gossypium raimondii HOM05D000113 ORTHO05D002571 7.7e-12 75.5 45 86.7
Manes.13G073000 Manihot esculenta HOM05D000113 ORTHO05D002571 7.7e-12 75.5 49 81.6
QL10p018794 Quercus lobata HOM05D000113 ORTHO05D002571 7.7e-12 75.5 45 82.2
QL93p0191_0033 Quercus lobata HOM05D000113 ORTHO05D002571 7.7e-12 75.5 45 82.2
Actinidia35027 Actinidia chinensis HOM05D000113 ORTHO05D002571 1.3e-11 74.7 49 79.6
Haze_02454 Corylus avellana HOM05D000113 ORTHO05D002571 1.3e-11 74.7 49 79.6
arahy.Tifrunner.gnm1.ann1.LUB4JJ Arachis hypogaea HOM05D000113 ORTHO05D002571 1.7e-11 74.3 45 84.4
arahy.Tifrunner.gnm1.ann1.U2PNLV Arachis hypogaea HOM05D000113 ORTHO05D002571 1.7e-11 74.3 45 84.4
Haze_07691 Corylus avellana HOM05D000113 ORTHO05D002571 1.7e-11 74.3 49 81.6
Dinv38794 Davidia involucrata HOM05D000113 ORTHO05D002571 1.7e-11 74.3 45 84.4
SGA_v2.0_scaffold7G04034 Striga asiatica HOM05D000113 ORTHO05D002571 1.7e-11 74.3 45 86.7
Cfa004955 Carpinus fangiana HOM05D000113 ORTHO05D002571 2.2e-11 73.9 49 79.6
Lj6g0016007 Lotus japonicus HOM05D000113 ORTHO05D002571 2.2e-11 73.9 68 63.2
GSVIVG01007911001 Vitis vinifera HOM05D000113 ORTHO05D002571 2.2e-11 73.9 45 86.7
Aqoxy3G03585 Aquilegia oxysepala HOM05D000113 ORTHO05D002571 2.9e-11 73.6 45 82.2
ClCG06G015750 Citrullus lanatus HOM05D000113 ORTHO05D002571 2.9e-11 73.6 49 77.6
CiPaw.11G050600 Carya illinoinensis HOM05D000113 ORTHO05D002571 3.8e-11 73.2 49 79.6
Phvul.009G193400 Phaseolus vulgaris HOM05D000113 ORTHO05D002571 5.0e-11 72.8 45 82.2
MELO3C017216.2 Cucumis melo HOM05D000113 ORTHO05D002571 6.5e-11 72.4 49 75.5
CsaV3_1G002800 Cucumis sativus L. HOM05D000113 ORTHO05D002571 6.5e-11 72.4 49 75.5
Glyma.06G201700 Glycine max HOM05D000113 ORTHO05D002571 6.5e-11 72.4 47 78.7
vmacro16510 Vaccinium macrocarpon HOM05D000113 ORTHO05D002571 6.5e-11 72.4 48 83.3
Rhsim12G0152100 Rhododendron simsii HOM05D000113 ORTHO05D002571 8.5e-11 72.0 49 75.5
Lj5C105T19 Lonicera japonica HOM05D000113 ORTHO05D002571 1.1e-10 71.6 45 82.2
Sopen03g034400 Solanum pennellii HOM05D000113 ORTHO05D002571 1.1e-10 71.6 46 80.4
AUR62002552 Chenopodium quinoa HOM05D000113 ORTHO05D002571 1.5e-10 71.2 45 82.2
AUR62029967 Chenopodium quinoa HOM05D000113 ORTHO05D002571 1.5e-10 71.2 45 82.2
Migut.D01678 Erythranthe guttata HOM05D000113 ORTHO05D002571 1.5e-10 71.2 58 69.0
Hma1.2p1_0060F.1_g033270 Hydrangea macrophylla HOM05D000113 ORTHO05D002571 1.5e-10 71.2 45 82.2
Sabra15G0006800 Salix brachista HOM05D000113 ORTHO05D002571 1.5e-10 71.2 45 80.0
EL10Ac3g06248 Beta vulgaris HOM05D000113 ORTHO05D002571 1.9e-10 70.9 45 82.2
RhsimUnG0148700 Rhododendron simsii HOM05D000113 ORTHO05D002571 1.9e-10 70.9 49 75.5
Sc10g0009750 Simmondsia chinensis HOM05D000113 ORTHO05D002571 1.9e-10 70.9 45 82.2
Lsat_1_v5_gn_6_69341 Lactuca sativa HOM05D000113 ORTHO05D002571 2.5e-10 70.5 45 80.0
Ca_26393_v3 Cicer arietinum L. HOM05D000113 ORTHO05D002571 3.2e-10 70.1 45 80.0
Eucgr.K02505 Eucalyptus grandis HOM05D000113 ORTHO05D002571 4.2e-10 69.7 60 63.3
Lalb_Chr13g0294241 Lupinus albus HOM05D000113 ORTHO05D002571 4.2e-10 69.7 47 78.7
Sed0024832 Sechium edule HOM05D000113 ORTHO05D002571 4.2e-10 69.7 58 62.1
Solyc03g115390.4 Solanum lycopersicum HOM05D000113 ORTHO05D002571 4.2e-10 69.7 45 80.0
PGSC0003DMG402024649 Solanum tuberosum HOM05D000113 ORTHO05D002571 4.2e-10 69.7 45 80.0
Dinv22270 Davidia involucrata HOM05D000113 ORTHO05D002571 7.2e-10 68.9 41 82.9
Medtr3g023880 Medicago truncatula HOM05D000113 ORTHO05D002571 7.2e-10 68.9 47 76.6
Sed0009402 Sechium edule HOM05D000113 ORTHO05D002571 7.2e-10 68.9 49 73.5
ATR0064G016 Amborella trichopoda HOM05D000113 ORTHO05D002571 9.4e-10 68.6 45 80.0
Ca_23233_v3 Cicer arietinum L. HOM05D000113 ORTHO05D002571 9.4e-10 68.6 45 77.8
Nitab4.5_0001410g0130 Nicotiana tabacum HOM05D000113 ORTHO05D002571 9.4e-10 68.6 41 85.4
Rhsim06G0025800 Rhododendron simsii HOM05D000113 ORTHO05D002571 9.4e-10 68.6 49 71.4
DCAR_021511 Daucus carota HOM05D000113 ORTHO05D002571 1.2e-09 68.2 45 77.8
TWI73G0006 Tripterygium wilfordii HOM05D000113 ORTHO05D002571 1.2e-09 68.2 64 60.9
TWI81G1049 Tripterygium wilfordii HOM05D000113 ORTHO05D002571 1.6e-09 67.8 49 71.4
THA.LOC104812747 Tarenaya hassleriana HOM05D000113 ORTHO05D002571 2.1e-09 67.4 44 79.5
PSO063G4203 Papaver somniferum HOM05D000113 ORTHO05D002571 2.7e-09 67.0 41 85.4
TPR.G12156 Trifolium pratense HOM05D000113 ORTHO05D002571 2.7e-09 67.0 45 75.6
VMungo1127G1561 Vigna mungo HOM05D000113 ORTHO05D002571 2.7e-09 67.0 44 79.5
ECA232G2775 Erigeron canadensis HOM05D000113 ORTHO05D002571 3.6e-09 66.6 45 77.8
Medtr1g010030 Medicago truncatula HOM05D000113 ORTHO05D002571 4.7e-09 66.2 47 74.5
Ca_13800_v3 Cicer arietinum L. HOM05D000113 ORTHO05D002571 6.1e-09 65.9 47 72.3
Lsat_1_v5_gn_9_24861 Lactuca sativa HOM05D000113 ORTHO05D002571 6.1e-09 65.9 47 70.2
Hund09854 Selenicereus undatus HOM05D000113 ORTHO05D012125 6.1e-09 65.9 45 75.6
Atru.chr12.1785 Acer truncatum HOM05D000113 ORTHO05D002571 8.0e-09 65.5 45 71.1
Psat0s3790g0040 Pisum sativum HOM05D000113 ORTHO05D002571 1.0e-08 65.1 45 73.3
SHI27001 Sapria himalayana HOM05D000113 ORTHO05D002571 1.4e-08 64.7 59 62.7
Thhalv10006650m.g Eutrema salsugineum HOM05D000113 ORTHO05D002571 1.8e-08 64.3 44 77.3
Sp1g28410 Schrenkiella parvula HOM05D000113 ORTHO05D002571 1.8e-08 64.3 44 77.3
FvH4_5g14240 Fragaria vesca HOM05D000113 ORTHO05D002571 2.3e-08 63.9 43 76.7
FAN08G1023 Fragaria x ananassa HOM05D000113 ORTHO05D002571 2.3e-08 63.9 43 76.7
FAN18G0690 Fragaria x ananassa HOM05D000113 ORTHO05D002571 2.3e-08 63.9 43 76.7
HanXRQChr09g0270171 Helianthus annuus HOM05D000113 ORTHO05D002571 2.3e-08 63.9 44 75.0
AL1G46740 Arabidopsis lyrata HOM05D000113 ORTHO05D002571 3.0e-08 63.5 44 77.3
AT1G32490 Arabidopsis thaliana HOM05D000113 ORTHO05D002571 3.0e-08 63.5 44 77.3
Carub.0001s3090 Capsella rubella HOM05D000113 ORTHO05D002571 3.0e-08 63.5 44 77.3
CARHR031940 Cardamine hirsuta HOM05D000113 ORTHO05D002571 3.0e-08 63.5 44 77.3
RcHm_v2.0_Chr7g0182681 Rosa chinensis HOM05D000113 ORTHO05D002571 3.0e-08 63.5 43 76.7
TAR374G0746 Trochodendron aralioides HOM05D000113 ORTHO05D002571 4.0e-08 63.2 38 84.2
BcaB06g29390 Brassica carinata HOM05D000113 ORTHO05D002571 5.2e-08 62.8 44 75.0
BcaC02g07104 Brassica carinata HOM05D000113 ORTHO05D002571 5.2e-08 62.8 44 75.0
Psat1g109600 Pisum sativum HOM05D000113 ORTHO05D002571 5.2e-08 62.8 45 71.1
Aa31LG2G13460 Aethionema arabicum HOM05D000113 ORTHO05D002571 6.7e-08 62.4 44 75.0
Migut.G00488 Erythranthe guttata HOM05D000113 ORTHO05D002571 6.7e-08 62.4 44 75.0
PGR044G1093 Punica granatum HOM05D000113 ORTHO05D002571 8.8e-08 62.0 45 71.1
THA.LOC104812748 Tarenaya hassleriana HOM05D000113 ORTHO05D002571 8.8e-08 62.0 44 72.7
RcHm_v2.0_Chr2g0092491 Rosa chinensis HOM05D000113 ORTHO05D002571 1.5e-07 61.2 46 65.2
unitig_8.g2956 Utricularia gibba HOM05D000113 ORTHO05D002571 2.0e-07 60.8 49 69.4
FvH4_1g06760 Fragaria vesca HOM05D000113 ORTHO05D002571 2.6e-07 60.5 46 65.2
Glyma.01G040900 Glycine max HOM05D000113 ORTHO05D002571 2.6e-07 60.5 41 75.6
BcaC05g27851 Brassica carinata HOM05D000113 ORTHO05D002571 3.3e-07 60.1 44 72.7
A05p24800 Brassica napus HOM05D000113 ORTHO05D002571 3.3e-07 60.1 44 72.7
C05p38490 Brassica napus HOM05D000113 ORTHO05D002571 3.3e-07 60.1 44 72.7
BolC5t32583H Brassica oleracea HOM05D000113 ORTHO05D002571 3.3e-07 60.1 44 72.7
BraA05t21363Z Brassica rapa HOM05D000113 ORTHO05D002571 3.3e-07 60.1 44 72.7
PSO409G0035 Papaver somniferum HOM05D000113 ORTHO05D002571 3.3e-07 60.1 38 81.6
FAN23G0734 Fragaria x ananassa HOM05D000113 ORTHO05D002571 4.4e-07 59.7 46 65.2
Actinidia38431 Actinidia chinensis HOM05D000742 ORTHO05D000924 5.7e-07 59.3 42 66.7
Medtr6g061840 Medicago truncatula HOM05D000113 ORTHO05D002571 5.7e-07 59.3 44 65.9
Prupe.8G103900 Prunus persica HOM05D000113 ORTHO05D002571 5.7e-07 59.3 59 57.6
CSS0030678 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D002571 9.7e-07 58.5 47 61.7
AL4G31370 Arabidopsis lyrata HOM05D000113 ORTHO05D002571 1.3e-06 58.2 44 68.2
Prupe.8G104500 Prunus persica HOM05D000113 ORTHO05D002571 1.3e-06 58.2 61 55.7
MD02G1072500 Malus domestica HOM05D000113 ORTHO05D002571 1.7e-06 57.8 46 65.2
Aa31LG7G6920 Aethionema arabicum HOM05D000113 ORTHO05D002571 2.2e-06 57.4 42 76.2
Thhalv10017881m.g Eutrema salsugineum HOM05D000113 ORTHO05D002571 2.2e-06 57.4 44 65.9
FAN26G0487 Fragaria x ananassa HOM05D000113 ORTHO05D012125 2.2e-06 57.4 45 64.4
FAN26G1966 Fragaria x ananassa HOM05D000113 ORTHO05D012125 2.2e-06 57.4 45 64.4
SEGI_02990 Sequoiadendron giganteum HOM05D000113 ORTHO05D002571 2.2e-06 57.4 45 64.4
SEGI_17413 Sequoiadendron giganteum HOM05D000113 ORTHO05D038446 2.2e-06 57.4 45 64.4
Atru.chr3.2014 Acer truncatum HOM05D000003 ORTHO05D000283 3.7e-06 56.6 77 33.8
CSS0042127 Camellia sinensis var. sinensis HOM05D000742 ORTHO05D000924 3.7e-06 56.6 39 76.9
DCAR_003991 Daucus carota HOM05D000113 ORTHO05D002571 3.7e-06 56.6 47 63.8
vmacro08575 Vaccinium macrocarpon HOM05D000742 ORTHO05D000924 4.8e-06 56.2 50 58.0
Sopen09g005800 Solanum pennellii HOM05D000113 ORTHO05D002571 6.3e-06 55.8 46 65.2
PGSC0003DMG400002239 Solanum tuberosum HOM05D000113 ORTHO05D002571 6.3e-06 55.8 46 67.4
Dinv01892 Davidia involucrata HOM05D000742 ORTHO05D000924 8.2e-06 55.5 44 65.9
Lalb_Chr07g0187381 Lupinus albus HOM05D000113 ORTHO05D002571 8.2e-06 55.5 43 65.1


User provided reference genes

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