Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007144 Camellia sinensis var. sinensis HOM05D005980 ORTHO05D007618 4.6e-305 1050.4 533 100.0
CSS0019737 Camellia sinensis var. sinensis HOM05D005980 ORTHO05D007618 1.4e-301 1038.9 533 98.3
Actinidia13438 Actinidia chinensis HOM05D005980 ORTHO05D007618 6.9e-253 877.1 535 83.2
Dinv21517 Davidia involucrata HOM05D005980 ORTHO05D007618 1.7e-243 845.9 533 80.7
Oeu032723.1 Olea europaea HOM05D005980 ORTHO05D007618 3.6e-233 811.6 533 76.9
PGSC0003DMG402021097 Solanum tuberosum HOM05D005980 ORTHO05D007618 4.4e-231 804.7 532 75.8
Solyc02g070390.3 Solanum lycopersicum HOM05D005980 ORTHO05D007618 9.7e-231 803.5 532 75.9
Sopen02g019470 Solanum pennellii HOM05D005980 ORTHO05D007618 1.7e-230 802.7 532 75.8
MSTRG.16268 Avicennia marina HOM05D005980 ORTHO05D007618 2.9e-227 792.0 536 75.6
GSVIVG01021555001 Vitis vinifera HOM05D005980 ORTHO05D007618 1.4e-226 789.6 507 78.9
Nitab4.5_0000869g0050 Nicotiana tabacum HOM05D005980 ORTHO05D007618 3.7e-222 775.0 535 73.8
CiPaw.09G119300 Carya illinoinensis HOM05D005980 ORTHO05D007618 1.2e-220 770.0 535 75.1
Prupe.4G086000 Prunus persica HOM05D005980 ORTHO05D007618 5.9e-220 767.7 534 73.2
Cc09_g08730 Coffea canephora HOM05D005980 ORTHO05D007618 6.5e-219 764.2 535 74.2
Hma1.2p1_0586F.1_g183830 Hydrangea macrophylla HOM05D005980 ORTHO05D007618 1.1e-218 763.5 469 82.3
Thecc.06G143900 Theobroma cacao HOM05D005980 ORTHO05D007618 1.1e-218 763.5 533 74.1
Peaxi162Scf00670g00346 Petunia axillaris HOM05D005980 ORTHO05D007618 1.5e-218 763.1 480 79.0
Gohir.D05G148400 Gossypium hirsutum HOM05D005980 ORTHO05D007618 2.5e-218 762.3 534 74.3
Ciclev10014878m.g Citrus clementina HOM05D005980 ORTHO05D007618 2.1e-217 759.2 536 73.9
Lj1A1168T68 Lonicera japonica HOM05D005980 ORTHO05D007618 3.6e-217 758.4 501 76.0
PGR102G3344 Punica granatum HOM05D005980 ORTHO05D007618 2.0e-215 752.7 550 73.3
MD10G1257800 Malus domestica HOM05D005980 ORTHO05D007618 7.5e-215 750.7 537 72.3
QL05p054997 Quercus lobata HOM05D005980 ORTHO05D007618 7.5e-215 750.7 534 74.2
FvH4_3g05000 Fragaria vesca HOM05D005980 ORTHO05D007618 2.2e-214 749.2 556 69.6
Nn3g20318 Nelumbo nucifera HOM05D005980 ORTHO05D007618 3.7e-214 748.4 537 74.1
Eucgr.D00262 Eucalyptus grandis HOM05D005980 ORTHO05D007618 1.1e-213 746.9 554 71.8
RcHm_v2.0_Chr5g0014971 Rosa chinensis HOM05D005980 ORTHO05D007618 1.4e-213 746.5 554 70.2
FAN21G1725 Fragaria x ananassa HOM05D005980 ORTHO05D007618 5.9e-212 741.1 563 68.7
FAN11G3650 Fragaria x ananassa HOM05D005980 ORTHO05D007618 1.3e-211 740.0 563 68.6
DCAR_003883 Daucus carota HOM05D005980 ORTHO05D007618 2.2e-211 739.2 522 72.2
Dinv32210 Davidia involucrata HOM05D005980 ORTHO05D007618 5.0e-211 738.0 443 85.6
COL.COLO4_31005 Corchorus olitorius HOM05D005980 ORTHO05D007618 1.1e-210 736.9 544 70.8
Rhsim13G0118300 Rhododendron simsii HOM05D005980 ORTHO05D007618 1.5e-210 736.5 537 72.8
Haze_05690 Corylus avellana HOM05D005980 ORTHO05D007618 1.9e-210 736.1 592 67.7
Nitab4.5_0005963g0020 Nicotiana tabacum HOM05D005980 ORTHO05D007618 6.1e-209 731.1 535 70.5
TAR626G0855 Trochodendron aralioides HOM05D005980 ORTHO05D007618 6.8e-208 727.6 536 72.2
Migut.M01863 Erythranthe guttata HOM05D005980 ORTHO05D007618 8.8e-208 727.2 537 70.0
FAN16G3332 Fragaria x ananassa HOM05D005980 ORTHO05D007618 2.6e-207 725.7 524 71.8
ClCG01G024920 Citrullus lanatus HOM05D005980 ORTHO05D007618 1.7e-206 723.0 537 70.6
Gorai.009G152600 Gossypium raimondii HOM05D005980 ORTHO05D007618 3.7e-206 721.8 506 73.9
Sabra16G0236200 Salix brachista HOM05D005980 ORTHO05D007618 3.7e-206 721.8 551 69.5
CsaV3_6G052070 Cucumis sativus L. HOM05D005980 ORTHO05D007618 6.3e-206 721.1 541 70.8
Potri.001G358400 Populus trichocarpa HOM05D005980 ORTHO05D007618 8.3e-206 720.7 540 70.6
SalBow8G1809 Salvia bowleyana HOM05D005980 ORTHO05D007618 3.1e-205 718.8 535 70.1
Aqoxy4G00005 Aquilegia oxysepala HOM05D005980 ORTHO05D007618 1.6e-204 716.5 510 72.0
Gohir.A05G146100 Gossypium hirsutum HOM05D005980 ORTHO05D007618 6.6e-203 711.1 534 70.2
EL10Ac1g01827 Beta vulgaris HOM05D005980 ORTHO05D007618 1.1e-202 710.3 508 72.2
PSO675G5271 Papaver somniferum HOM05D005980 ORTHO05D007618 1.5e-202 709.9 537 70.4
MELO3C007103.2 Cucumis melo HOM05D005980 ORTHO05D007618 1.6e-201 706.4 558 68.1
PSO541G1780 Papaver somniferum HOM05D005980 ORTHO05D007618 3.6e-201 705.3 536 70.0
Sed0023515 Sechium edule HOM05D005980 ORTHO05D007618 6.1e-201 704.5 538 68.6
AUR62025366 Chenopodium quinoa HOM05D005980 ORTHO05D007618 5.2e-200 701.4 534 68.7
AUR62028384 Chenopodium quinoa HOM05D005980 ORTHO05D007618 1.4e-197 693.3 534 68.7
Sed0012577 Sechium edule HOM05D005980 ORTHO05D007618 2.4e-197 692.6 538 68.2
TWI73G1267 Tripterygium wilfordii HOM05D005980 ORTHO05D007618 4.1e-197 691.8 505 70.7
CANSAT35G0447 Cannabis sativa HOM05D005980 ORTHO05D007618 2.0e-196 689.5 544 67.5
Manes.15G125300 Manihot esculenta HOM05D005980 ORTHO05D007618 4.5e-196 688.3 451 78.5
Lj2C323G3 Lonicera japonica HOM05D005980 ORTHO05D007618 1.3e-195 686.8 496 72.4
SGA_v2.0_scaffold51G18642 Striga asiatica HOM05D005980 ORTHO05D007618 3.9e-195 685.3 531 69.1
Lj6g0019056 Lotus japonicus HOM05D005980 ORTHO05D007618 1.5e-194 683.3 501 72.1
THA.LOC104820671 Tarenaya hassleriana HOM05D005980 ORTHO05D007618 8.0e-193 677.6 546 66.5
A05p11020 Brassica napus HOM05D005980 ORTHO05D007618 5.2e-192 674.9 545 66.2
ATR1098G083 Amborella trichopoda HOM05D005980 ORTHO05D007618 8.9e-192 674.1 517 69.6
FAN25G0178 Fragaria x ananassa HOM05D005980 ORTHO05D007618 8.9e-192 674.1 590 63.1
BraA05t20047Z Brassica rapa HOM05D005980 ORTHO05D007618 1.2e-191 673.7 545 66.1
Glyma.13G221300 Glycine max HOM05D005980 ORTHO05D007618 1.2e-191 673.7 489 73.4
C04p14140 Brassica napus HOM05D005980 ORTHO05D007618 5.8e-191 671.4 543 66.5
BcaC02g11540 Brassica carinata HOM05D005980 ORTHO05D007618 7.5e-191 671.0 543 66.5
BolC4t23002H Brassica oleracea HOM05D005980 ORTHO05D007618 7.5e-191 671.0 543 66.5
Phvul.006G168100 Phaseolus vulgaris HOM05D005980 ORTHO05D007618 2.2e-190 669.5 484 72.7
Aa31LG10G6710 Aethionema arabicum HOM05D005980 ORTHO05D007618 3.7e-190 668.7 548 64.4
AT2G34640 Arabidopsis thaliana HOM05D005980 ORTHO05D007618 1.1e-189 667.2 545 65.0
AL4G30630 Arabidopsis lyrata HOM05D005980 ORTHO05D007618 1.2e-188 663.7 546 65.2
arahy.Tifrunner.gnm1.ann1.G1ZF0U Arachis hypogaea HOM05D005980 ORTHO05D007618 1.2e-188 663.7 514 68.7
Psat1g191560 Pisum sativum HOM05D005980 ORTHO05D007618 1.6e-188 663.3 503 69.2
arahy.Tifrunner.gnm1.ann1.PI6078 Arachis hypogaea HOM05D005980 ORTHO05D007618 7.8e-188 661.0 514 68.3
Carub.0004s1633 Capsella rubella HOM05D005980 ORTHO05D007618 1.0e-187 660.6 546 64.5
Thhalv10016502m.g Eutrema salsugineum HOM05D005980 ORTHO05D007618 2.3e-187 659.4 547 64.4
Medtr2g018740 Medicago truncatula HOM05D005980 ORTHO05D007618 6.6e-187 657.9 511 68.1
CARHR128740 Cardamine hirsuta HOM05D005980 ORTHO05D007618 1.9e-186 656.4 545 64.4
VMungo0540G0170 Vigna mungo HOM05D005980 ORTHO05D007618 1.9e-186 656.4 476 72.9
vmacro03427 Vaccinium macrocarpon HOM05D005980 ORTHO05D007618 2.8e-185 652.5 429 76.9
HanXRQChr10g0301191 Helianthus annuus HOM05D005980 ORTHO05D007618 5.2e-184 648.3 527 64.5
Sp4g16910 Schrenkiella parvula HOM05D005980 ORTHO05D007618 1.5e-183 646.7 550 63.8
Sc05g0005970 Simmondsia chinensis HOM05D005980 ORTHO05D007618 4.9e-182 641.7 456 71.5
TPR.G26225 Trifolium pratense HOM05D005980 ORTHO05D007618 1.6e-180 636.7 524 64.3
Lalb_Chr18g0055171 Lupinus albus HOM05D005980 ORTHO05D007618 1.3e-179 633.6 508 65.6
Lsat_1_v5_gn_9_33800 Lactuca sativa HOM05D005980 ORTHO05D007618 4.0e-176 622.1 514 63.4
unitig_578.g16128 Utricularia gibba HOM05D005980 ORTHO05D007618 1.3e-174 617.1 534 61.8
Ah.12g059810 Amaranthus hybridus HOM05D005980 ORTHO05D007618 2.9e-174 615.9 480 67.3
Ca_00513_v3 Cicer arietinum L. HOM05D005980 ORTHO05D007618 4.9e-174 615.1 463 70.2
BcaNung07262 Brassica carinata HOM05D005980 ORTHO05D007618 3.8e-166 589.0 432 70.8
ECA247G3302 Erigeron canadensis HOM05D005980 ORTHO05D007618 2.1e-161 573.2 452 65.3
Os01g0769900 Oryza sativa ssp. japonica HOM05D005980 ORTHO05D007618 6.9e-152 541.6 563 55.2
Zm00001eb152010 Zea mays HOM05D005980 ORTHO05D007618 2.4e-149 533.1 501 57.3
Hma1.2p1_0586F.1_g183820 Hydrangea macrophylla HOM05D005980 ORTHO05D007618 2.9e-110 403.3 270 75.6
HPP92_001893 Vanilla planifolia HOM05D005980 ORTHO05D007618 4.7e-108 396.0 399 55.6
MD05G1278700 Malus domestica HOM05D005980 ORTHO05D007618 8.8e-107 391.7 298 69.8
MBI02_g18932_MAGBIO Magnolia biondii HOM05D005980 ORTHO05D007618 3.5e-95 353.2 271 67.5
AagrBONN_evm.TU.Sc2ySwM_228.94 Anthoceros agrestis HOM05D005980 ORTHO05D007618 7.0e-88 328.9 388 47.2
Cpa.g.sc17.57 Carica papaya HOM05D005980 ORTHO05D007618 1.2e-87 328.2 268 64.6
CDE01G0059 Ceratophyllum demersum HOM05D005980 ORTHO05D007618 2.3e-86 323.9 309 58.6
Cpa.g.sc17.56 Carica papaya HOM05D005980 ORTHO05D007618 7.0e-80 302.4 160 88.1
Mapoly0061s0053 Marchantia polymorpha HOM05D005980 ORTHO05D007618 1.7e-78 297.7 419 40.6
Cpa.g.c47879 Carica papaya HOM05D005980 ORTHO05D007618 1.4e-72 278.1 197 71.1
Pp3c3_26950 Physcomitrium patens HOM05D005980 ORTHO05D007618 6.8e-67 259.2 515 34.6
Pp3c10_12300 Physcomitrium patens HOM05D005980 ORTHO05D007618 2.2e-65 254.2 407 37.6
Hma1.2p1_0581F.1_g182930 Hydrangea macrophylla HOM05D005980 ORTHO05D007618 1.5e-61 241.5 147 82.3
SGA_v2.0_scaffold230G43391 Striga asiatica HOM05D005980 ORTHO05D007618 1.3e-57 228.4 125 81.6
SGA_v2.0_scaffold6G03478 Striga asiatica HOM05D005980 ORTHO05D007618 1.1e-56 225.3 125 83.2
arahy.Tifrunner.gnm1.ann1.D5DAI6 Arachis hypogaea HOM05D005980 ORTHO05D007618 1.0e-54 218.8 263 51.3
Lsat_1_v5_gn_1_94041 Lactuca sativa HOM05D005980 ORTHO05D007618 2.6e-50 204.1 144 68.8
HPP92_001892 Vanilla planifolia HOM05D005980 ORTHO05D007618 1.4e-48 198.4 165 65.5
CBR_g48045 Chara braunii HOM05D005980 ORTHO05D007618 7.8e-47 192.6 249 43.8
MD05G1278800 Malus domestica HOM05D005980 ORTHO05D007618 3.8e-33 147.1 80 81.2
Cpa.g.sc17.55 Carica papaya HOM05D005980 ORTHO05D007618 9.3e-32 142.5 106 75.5
Actinidia33673 Actinidia chinensis HOM05D005980 ORTHO05D007618 3.5e-31 140.6 183 50.8
SEGI_30301 Sequoiadendron giganteum HOM05D005980 ORTHO05D007618 6.0e-31 139.8 222 41.0
Glyma.15G091200 Glycine max HOM05D005980 ORTHO05D007618 1.7e-25 121.7 100 67.0
HanXRQChr10g0301121 Helianthus annuus HOM05D005980 ORTHO05D007618 1.9e-24 118.2 114 55.3
vmacro03428 Vaccinium macrocarpon HOM05D005980 ORTHO05D007618 3.5e-23 114.0 99 67.7
MBI02_g26594_MAGBIO Magnolia biondii HOM05D005980 ORTHO05D007618 3.3e-21 107.5 81 74.1
Actinidia33672 Actinidia chinensis HOM05D005980 ORTHO05D007618 6.9e-19 99.8 76 72.4
arahy.Tifrunner.gnm1.ann1.MPA65D Arachis hypogaea HOM05D005980 ORTHO05D007618 3.4e-18 97.4 53 84.9
Haze_05663 Corylus avellana HOM05D005980 ORTHO05D007618 6.5e-17 93.2 112 53.6
Lsat_1_v5_gn_1_94021 Lactuca sativa HOM05D005980 ORTHO05D007618 2.3e-14 84.7 139 45.3
Lsat_1_v5_gn_7_71901 Lactuca sativa HOM05D002457 ORTHO05D005750 5.1e-14 83.6 93 47.3
MSTRG.16269 Avicennia marina HOM05D005980 ORTHO05D007618 3.3e-13 80.9 49 71.4
MD05G1278900 Malus domestica HOM05D005980 ORTHO05D007618 3.1e-11 74.3 67 62.7
Cpa.g.c48158 Carica papaya HOM05D005980 ORTHO05D007618 1.6e-07 62.0 32 84.4


User provided reference genes

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