Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007033 Camellia sinensis var. sinensis HOM05D000110 ORTHO05D000024 8.6e-87 323.6 155 100.0
Cc01_g11670 Coffea canephora HOM05D000110 ORTHO05D000024 6.6e-47 191.0 157 65.6
Thecc.09G261600 Theobroma cacao HOM05D000110 ORTHO05D000024 4.3e-46 188.3 157 65.6
TAR636G0426 Trochodendron aralioides HOM05D000110 ORTHO05D000024 4.0e-44 181.8 155 61.3
vmacro03163 Vaccinium macrocarpon HOM05D000110 ORTHO05D000024 1.2e-43 180.3 168 63.7
Rhsim13G0091600 Rhododendron simsii HOM05D000110 ORTHO05D000024 1.3e-42 176.8 172 61.6
Duzib168G2285 Durio zibethinus HOM05D000110 ORTHO05D000024 8.4e-42 174.1 163 62.0
Phvul.011G071900 Phaseolus vulgaris HOM05D000110 ORTHO05D000024 1.4e-41 173.3 157 59.9
QL01p036638 Quercus lobata HOM05D000110 ORTHO05D000024 2.3e-39 166.0 159 59.7
TWI79G1620 Tripterygium wilfordii HOM05D000110 ORTHO05D000024 3.9e-39 165.2 154 58.4
TAR633G2748 Trochodendron aralioides HOM05D000110 ORTHO05D000024 1.1e-38 163.7 157 59.2
Duzib150G0814 Durio zibethinus HOM05D000110 ORTHO05D000024 1.9e-38 162.9 156 56.4
Manes.11G140300 Manihot esculenta HOM05D000110 ORTHO05D000024 3.3e-38 162.2 156 58.3
TAR369G0743 Trochodendron aralioides HOM05D000110 ORTHO05D000024 3.3e-38 162.2 154 56.5
CiPaw.13G105900 Carya illinoinensis HOM05D000110 ORTHO05D000024 9.6e-38 160.6 161 55.3
Nn2g12993 Nelumbo nucifera HOM05D000110 ORTHO05D000024 2.1e-37 159.5 157 56.1
GSVIVG01025119001 Vitis vinifera HOM05D000110 ORTHO05D000024 3.1e-36 155.6 157 56.7
MSTRG.18633 Avicennia marina HOM05D000110 ORTHO05D000024 9.0e-36 154.1 160 58.8
Nn2g10656 Nelumbo nucifera HOM05D000110 ORTHO05D000024 1.2e-35 153.7 160 51.2
Peaxi162Scf00389g00621 Petunia axillaris HOM05D000110 ORTHO05D000024 1.2e-35 153.7 146 61.0
MSTRG.21150 Avicennia marina HOM05D000110 ORTHO05D000024 1.5e-35 153.3 161 58.4
TWI75G1872 Tripterygium wilfordii HOM05D000110 ORTHO05D000024 2.0e-35 152.9 150 56.7
Manes.04G026400 Manihot esculenta HOM05D000110 ORTHO05D000024 3.4e-35 152.1 158 55.7
Glyma.12G072400 Glycine max HOM05D000110 ORTHO05D000024 7.6e-35 151.0 162 56.2
Duzib170G0489 Durio zibethinus HOM05D000110 ORTHO05D000024 1.7e-34 149.8 149 57.0
TAR623G1131 Trochodendron aralioides HOM05D000110 ORTHO05D000024 2.9e-34 149.1 157 53.5
Hma1.2p1_2156F.1_g315410 Hydrangea macrophylla HOM05D000110 ORTHO05D000024 3.8e-34 148.7 155 57.4
TWI31G1281 Tripterygium wilfordii HOM05D000110 ORTHO05D000024 1.9e-33 146.4 150 58.7
CSS0002654 Camellia sinensis var. sinensis HOM05D000110 ORTHO05D000024 4.2e-33 145.2 145 61.4
CSS0005691 Camellia sinensis var. sinensis HOM05D000110 ORTHO05D000024 4.2e-33 145.2 145 61.4
Lalb_Chr01g0004111 Lupinus albus HOM05D000110 ORTHO05D000024 4.2e-33 145.2 167 55.7
Cfa011375 Carpinus fangiana HOM05D000110 ORTHO05D000024 4.6e-32 141.7 153 53.6
Prupe.6G092600 Prunus persica HOM05D000110 ORTHO05D000024 7.9e-32 141.0 184 49.5
Ciclev10028912m.g Citrus clementina HOM05D000110 ORTHO05D000024 1.1e-30 137.1 174 48.9
Haze_23940 Corylus avellana HOM05D000110 ORTHO05D000024 2.5e-30 136.0 157 53.5
Lj3g0019123 Lotus japonicus HOM05D000110 ORTHO05D000024 5.6e-30 134.8 168 50.6
Eucgr.J00957 Eucalyptus grandis HOM05D000110 ORTHO05D000024 1.6e-29 133.3 153 52.3
COL.COLO4_25261 Corchorus olitorius HOM05D000110 ORTHO05D000024 2.1e-29 132.9 171 50.9
Glyma.11G151497 Glycine max HOM05D000110 ORTHO05D000024 8.1e-29 131.0 170 53.5
Lalb_Chr19g0137461 Lupinus albus HOM05D000110 ORTHO05D000024 3.1e-28 129.0 167 49.7
Peaxi162Scf00072g00039 Petunia axillaris HOM05D000110 ORTHO05D000024 3.1e-28 129.0 166 51.2
Aqoxy4G03194 Aquilegia oxysepala HOM05D000110 ORTHO05D000024 2.0e-27 126.3 159 48.4
MD11G1123400 Malus domestica HOM05D000110 ORTHO05D000024 2.6e-27 125.9 172 50.6
Glyma.15G044800 Glycine max HOM05D000110 ORTHO05D000024 2.2e-26 122.9 151 47.7
CAN.G1001.6 Capsicum annuum HOM05D000110 ORTHO05D000024 8.4e-26 120.9 152 52.0
Psat7g222280 Pisum sativum HOM05D000110 ORTHO05D000024 1.4e-25 120.2 165 49.1
Glyma.13G329000 Glycine max HOM05D000110 ORTHO05D000024 1.9e-25 119.8 152 50.0
Nitab4.5_0000888g0130 Nicotiana tabacum HOM05D000110 ORTHO05D000024 7.1e-25 117.9 151 51.7
FAN16G3044 Fragaria x ananassa HOM05D000110 ORTHO05D000024 2.1e-24 116.3 165 50.3
Phvul.005G137700 Phaseolus vulgaris HOM05D000110 ORTHO05D000024 2.1e-24 116.3 151 45.7
Ca_27411_v3 Cicer arietinum L. HOM05D000110 ORTHO05D000024 2.7e-24 115.9 150 48.7
TPR.G2966 Trifolium pratense HOM05D000110 ORTHO05D000024 4.6e-24 115.2 160 46.2
MD03G1110000 Malus domestica HOM05D000110 ORTHO05D000024 6.0e-24 114.8 166 50.0
FAN25G0291 Fragaria x ananassa HOM05D000110 ORTHO05D000024 1.0e-23 114.0 162 50.6
Hma1.2p1_2033F.1_g311860 Hydrangea macrophylla HOM05D000110 ORTHO05D000024 1.3e-23 113.6 153 48.4
Nitab4.5_0008601g0010 Nicotiana tabacum HOM05D000110 ORTHO05D000024 1.3e-23 113.6 162 48.8
Dinv32804 Davidia involucrata HOM05D000110 ORTHO05D000024 2.3e-23 112.8 181 47.0
FAN11G3263 Fragaria x ananassa HOM05D000110 ORTHO05D000024 5.1e-23 111.7 165 49.1
Nitab4.5_0004875g0010 Nicotiana tabacum HOM05D000110 ORTHO05D000024 5.1e-23 111.7 154 48.7
Nitab4.5_0007503g0010 Nicotiana tabacum HOM05D000110 ORTHO05D000024 5.1e-23 111.7 164 47.6
Cpa.g.sc318.1 Carica papaya HOM05D000110 ORTHO05D000024 8.7e-23 110.9 182 45.1
VMungo1080G0532 Vigna mungo HOM05D000110 ORTHO05D000024 1.5e-22 110.2 158 43.7
arahy.Tifrunner.gnm1.ann1.LKT5QN Arachis hypogaea HOM05D000110 ORTHO05D000024 4.3e-22 108.6 135 50.4
SalBow3G2407 Salvia bowleyana HOM05D000110 ORTHO05D000024 5.7e-22 108.2 151 47.7
RcHm_v2.0_Chr5g0061151 Rosa chinensis HOM05D000110 ORTHO05D000024 7.4e-22 107.8 164 48.2
Medtr4g461080 Medicago truncatula HOM05D000110 ORTHO05D000024 9.6e-22 107.5 158 44.3
Atru.chr3.3719 Acer truncatum HOM05D000110 ORTHO05D000024 1.3e-21 107.1 191 38.7
CiPaw.14G077100 Carya illinoinensis HOM05D000110 ORTHO05D000024 1.3e-21 107.1 136 50.7
DCAR_018840 Daucus carota HOM05D000110 ORTHO05D000024 1.3e-21 107.1 165 47.3
FAN21G2461 Fragaria x ananassa HOM05D000110 ORTHO05D000024 1.3e-21 107.1 164 47.6
arahy.Tifrunner.gnm1.ann1.XU5EBV Arachis hypogaea HOM05D000110 ORTHO05D000024 4.8e-21 105.1 136 50.0
Lsat_1_v5_gn_2_25421 Lactuca sativa HOM05D000110 ORTHO05D000024 6.2e-21 104.8 185 42.7
Oeu038944.1 Olea europaea HOM05D000110 ORTHO05D000024 6.2e-21 104.8 152 47.4
vmacro23461 Vaccinium macrocarpon HOM05D000110 ORTHO05D000024 3.1e-20 102.4 152 44.1
CAN.G1106.1 Capsicum annuum HOM05D000110 ORTHO05D000024 5.3e-20 101.7 160 45.0
Actinidia24073 Actinidia chinensis HOM05D000110 ORTHO05D000024 6.9e-20 101.3 148 48.0
ClCG02G020850 Citrullus lanatus HOM05D000110 ORTHO05D000024 9.0e-20 100.9 120 52.5
HanXRQChr13g0401771 Helianthus annuus HOM05D000110 ORTHO05D000024 1.2e-19 100.5 189 42.3
DCAR_006035 Daucus carota HOM05D000110 ORTHO05D000024 1.5e-19 100.1 171 45.6
FvH4_3g33660 Fragaria vesca HOM05D000110 ORTHO05D000024 1.5e-19 100.1 150 49.3
CsaV3_6G021510 Cucumis sativus L. HOM05D000110 ORTHO05D000024 6.5e-18 94.7 120 50.0
PGSC0003DMG400029191 Solanum tuberosum HOM05D000110 ORTHO05D000024 8.4e-18 94.4 151 43.0
Nitab4.5_0000888g0140 Nicotiana tabacum HOM05D000110 ORTHO05D000024 1.1e-17 94.0 162 43.2
PGSC0003DMG400007506 Solanum tuberosum HOM05D000110 ORTHO05D000024 1.1e-17 94.0 173 41.0
MELO3C025737.2 Cucumis melo HOM05D000110 ORTHO05D000024 1.4e-17 93.6 119 47.9
Solyc11g072500.2 Solanum lycopersicum HOM05D000110 ORTHO05D000024 1.4e-17 93.6 152 44.1
Lsat_1_v5_gn_6_24021 Lactuca sativa HOM05D000110 ORTHO05D000024 2.5e-17 92.8 195 39.5
EL10Ac9g22418 Beta vulgaris HOM05D000110 ORTHO05D000024 4.2e-17 92.0 166 39.8
Dinv01995 Davidia involucrata HOM05D000110 ORTHO05D000024 5.5e-17 91.7 198 39.9
Sopen06g001120 Solanum pennellii HOM05D000110 ORTHO05D000024 9.3e-17 90.9 131 44.3
Sopen06g031790 Solanum pennellii HOM05D000110 ORTHO05D000024 1.2e-16 90.5 173 39.9
arahy.Tifrunner.gnm1.ann1.ME2JXJ Arachis hypogaea HOM05D000110 ORTHO05D000024 1.6e-16 90.1 164 39.6
Eucgr.B02459 Eucalyptus grandis HOM05D000110 ORTHO05D000024 2.1e-16 89.7 171 41.5
arahy.Tifrunner.gnm1.ann1.34G278 Arachis hypogaea HOM05D000110 ORTHO05D000024 4.6e-16 88.6 165 40.6
Sed0023474 Sechium edule HOM05D000110 ORTHO05D000024 4.6e-16 88.6 123 48.0
Solyc06g075370.3 Solanum lycopersicum HOM05D000110 ORTHO05D000024 4.6e-16 88.6 173 39.9
Oeu022270.1 Olea europaea HOM05D000110 ORTHO05D000024 6.1e-16 88.2 143 41.3
Sopen11g030150 Solanum pennellii HOM05D000110 ORTHO05D000024 7.9e-16 87.8 150 41.3
Lalb_Chr22g0350151 Lupinus albus HOM05D000110 ORTHO05D000024 1.0e-15 87.4 157 41.4
Solyc06g005130.3 Solanum lycopersicum HOM05D000110 ORTHO05D000024 1.3e-15 87.0 162 40.7
ECA233G3722 Erigeron canadensis HOM05D000110 ORTHO05D000024 1.1e-14 84.0 186 36.6
Rhsim01G0221100 Rhododendron simsii HOM05D000110 ORTHO05D000024 1.5e-14 83.6 157 36.9
PGSC0003DMG400025372 Solanum tuberosum HOM05D000110 ORTHO05D000024 2.5e-14 82.8 175 37.7
Gohir.A05G075100 Gossypium hirsutum HOM05D000110 ORTHO05D000024 4.3e-14 82.0 151 40.4
Gohir.D05G077900 Gossypium hirsutum HOM05D000110 ORTHO05D000024 4.3e-14 82.0 151 40.4
Oeu005921.1 Olea europaea HOM05D000110 ORTHO05D000024 7.4e-14 81.3 156 38.5
Gorai.009G079400 Gossypium raimondii HOM05D000110 ORTHO05D000024 1.3e-13 80.5 151 39.7
PSO384G2819 Papaver somniferum HOM05D000110 ORTHO05D000024 1.6e-13 80.1 208 34.1
PSO339G2611 Papaver somniferum HOM05D000110 ORTHO05D000024 2.2e-13 79.7 207 33.8
AUR62006501 Chenopodium quinoa HOM05D000110 ORTHO05D000024 2.8e-13 79.3 175 33.1
Ca_01434_v3 Cicer arietinum L. HOM05D000110 ORTHO05D000024 3.1e-12 75.9 177 37.3
Actinidia03752 Actinidia chinensis HOM05D000110 ORTHO05D000024 9.0e-12 74.3 122 41.0
Migut.N02629 Erythranthe guttata HOM05D000110 ORTHO05D000024 2.0e-11 73.2 151 37.1
PGR102G0879 Punica granatum HOM05D000110 ORTHO05D000024 2.6e-11 72.8 125 43.2
AUR62025032 Chenopodium quinoa HOM05D000110 ORTHO05D000024 3.4e-11 72.4 175 32.6
SHI06029 Sapria himalayana HOM05D000110 ORTHO05D000024 5.9e-11 71.6 161 39.8
VMungo0540G1516 Vigna mungo HOM05D000110 ORTHO05D046694 1.0e-10 70.9 141 37.6
Sc21g0000090 Simmondsia chinensis HOM05D000110 ORTHO05D000024 5.0e-10 68.6 163 37.4
Gohir.D08G018200 Gossypium hirsutum HOM05D000110 ORTHO05D000024 8.5e-10 67.8 156 38.5
Sed0001770 Sechium edule HOM05D000110 ORTHO05D000024 1.4e-09 67.0 129 43.4
CARHR121520 Cardamine hirsuta HOM05D000110 ORTHO05D000024 1.9e-09 66.6 155 38.1
Gohir.A08G008200 Gossypium hirsutum HOM05D000110 ORTHO05D000024 3.2e-09 65.9 128 40.6
CDE09G1278 Ceratophyllum demersum HOM05D000110 ORTHO05D000024 4.2e-09 65.5 142 31.0
Glyma.03G078800 Glycine max HOM05D000110 ORTHO05D046694 4.2e-09 65.5 90 46.7
HanXRQChr02g0051351 Helianthus annuus HOM05D000110 ORTHO05D000024 9.4e-09 64.3 148 33.8
Gorai.004G012700 Gossypium raimondii HOM05D000110 ORTHO05D000024 1.6e-08 63.5 128 40.6
THA.LOC104800616 Tarenaya hassleriana HOM05D000110 ORTHO05D000024 2.1e-08 63.2 116 39.7
Migut.D02176 Erythranthe guttata HOM05D000110 ORTHO05D000024 2.7e-08 62.8 152 36.2
TPR.G11582 Trifolium pratense HOM05D000110 ORTHO05D000024 2.7e-08 62.8 155 35.5
Thhalv10017032m.g Eutrema salsugineum HOM05D000110 ORTHO05D000024 3.6e-08 62.4 154 33.8
Nitab4.5_0000533g0150 Nicotiana tabacum HOM05D000110 ORTHO05D000024 1.4e-07 60.5 133 39.1
Aa31LG5G7700 Aethionema arabicum HOM05D000110 ORTHO05D000024 2.3e-07 59.7 79 45.6
CDE02G2481 Ceratophyllum demersum HOM05D000110 ORTHO05D000024 3.9e-07 58.9 146 30.8
AL4G22900 Arabidopsis lyrata HOM05D000110 ORTHO05D000024 8.8e-07 57.8 151 35.1
AL4G22920 Arabidopsis lyrata HOM05D000110 ORTHO05D000024 1.1e-06 57.4 151 35.1
Sp4g11340 Schrenkiella parvula HOM05D000110 ORTHO05D000024 1.1e-06 57.4 118 36.4
Carub.0004s0948 Capsella rubella HOM05D000110 ORTHO05D000024 2.5e-06 56.2 123 36.6
Gohir.A07G115900 Gossypium hirsutum HOM05D000110 ORTHO05D000024 4.3e-06 55.5 135 38.5
Gorai.001G129500 Gossypium raimondii HOM05D000110 ORTHO05D000024 4.3e-06 55.5 147 35.4
Hund08175 Selenicereus undatus HOM05D000110 ORTHO05D000024 5.7e-06 55.1 165 33.9


User provided reference genes

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