Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006883 Camellia sinensis var. sinensis HOM05D006873 ORTHO05D008668 2.2e-225 785.4 425 100.0
CSS0023446 Camellia sinensis var. sinensis HOM05D006873 ORTHO05D008668 9.2e-224 780.0 428 99.3
Actinidia15007 Actinidia chinensis HOM05D006873 ORTHO05D008668 2.1e-119 433.3 435 62.8
Manes.05G090700 Manihot esculenta HOM05D006873 ORTHO05D008668 3.3e-88 329.7 386 53.9
vmacro16278 Vaccinium macrocarpon HOM05D006873 ORTHO05D008668 2.3e-86 323.6 396 50.5
Haze_12141 Corylus avellana HOM05D006873 ORTHO05D008668 8.9e-86 321.6 480 47.9
Cfa009104 Carpinus fangiana HOM05D006873 ORTHO05D008668 3.4e-85 319.7 472 50.6
Nn3g16974 Nelumbo nucifera HOM05D006873 ORTHO05D008668 3.7e-84 316.2 444 46.6
Atru.chr11.1966 Acer truncatum HOM05D006873 ORTHO05D008668 3.2e-83 313.2 325 55.4
CiPaw.06G074700 Carya illinoinensis HOM05D006873 ORTHO05D008668 7.8e-82 308.5 471 47.3
Rhsim12G0124200 Rhododendron simsii HOM05D006873 ORTHO05D008668 1.0e-81 308.1 388 49.7
MSTRG.7876 Avicennia marina HOM05D006873 ORTHO05D008668 1.9e-80 303.9 430 45.6
Nitab4.5_0009368g0020 Nicotiana tabacum HOM05D006873 ORTHO05D008668 7.3e-80 302.0 437 49.0
DCAR_026551 Daucus carota HOM05D006873 ORTHO05D008668 1.2e-79 301.2 427 50.6
Dinv31000 Davidia involucrata HOM05D006873 ORTHO05D008668 6.2e-79 298.9 316 58.2
Dinv31103 Davidia involucrata HOM05D006873 ORTHO05D008668 6.2e-79 298.9 316 58.2
Nitab4.5_0000257g0240 Nicotiana tabacum HOM05D006873 ORTHO05D008668 6.2e-79 298.9 421 50.6
Ciclev10031560m.g Citrus clementina HOM05D006873 ORTHO05D008668 5.2e-78 295.8 408 48.8
PGR119G2095 Punica granatum HOM05D006873 ORTHO05D008668 5.2e-78 295.8 393 46.8
CANSAT01G2194 Cannabis sativa HOM05D006873 ORTHO05D008668 4.4e-77 292.7 450 46.2
SalBow2G2439 Salvia bowleyana HOM05D006873 ORTHO05D008668 1.7e-76 290.8 430 43.7
Cpa.g.sc5.353 Carica papaya HOM05D006873 ORTHO05D008668 3.8e-76 289.7 384 50.0
SalBow2G2215 Salvia bowleyana HOM05D006873 ORTHO05D008668 6.4e-76 288.9 430 43.5
Solyc05g006070.4 Solanum lycopersicum HOM05D006873 ORTHO05D008668 1.0e-73 281.6 426 47.2
Duzib248G0774 Durio zibethinus HOM05D006873 ORTHO05D008668 8.7e-73 278.5 452 42.9
PGSC0003DMG400015575 Solanum tuberosum HOM05D006873 ORTHO05D008668 8.7e-73 278.5 429 43.1
Sopen05g002090 Solanum pennellii HOM05D006873 ORTHO05D008668 1.1e-72 278.1 429 47.1
Thecc.02G242900 Theobroma cacao HOM05D006873 ORTHO05D008668 1.9e-72 277.3 442 42.8
Potri.008G146700 Populus trichocarpa HOM05D006873 ORTHO05D008668 3.6e-71 273.1 338 52.1
TAR622G0254 Trochodendron aralioides HOM05D006873 ORTHO05D008668 3.6e-71 273.1 435 49.0
QL03p062447 Quercus lobata HOM05D006873 ORTHO05D008668 1.2e-69 268.1 349 49.0
SGA_v2.0_scaffold166G38344 Striga asiatica HOM05D006873 ORTHO05D008668 1.7e-68 264.2 451 39.7
Peaxi162Scf00421g00062 Petunia axillaris HOM05D006873 ORTHO05D008668 2.9e-68 263.5 429 44.8
Gohir.A08G123000 Gossypium hirsutum HOM05D006873 ORTHO05D008668 3.8e-68 263.1 428 41.6
Lj2g0015184 Lotus japonicus HOM05D006873 ORTHO05D008668 4.2e-67 259.6 337 47.5
Gorai.004G149100 Gossypium raimondii HOM05D006873 ORTHO05D008668 7.1e-67 258.8 467 39.8
Aqoxy3G03077 Aquilegia oxysepala HOM05D006873 ORTHO05D008668 9.3e-67 258.5 496 40.7
Gohir.D08G144400 Gossypium hirsutum HOM05D006873 ORTHO05D008668 1.6e-66 257.7 467 40.9
Phvul.002G074900 Phaseolus vulgaris HOM05D006873 ORTHO05D008668 2.7e-66 256.9 442 40.3
PSO832G2329 Papaver somniferum HOM05D006873 ORTHO05D008668 4.6e-66 256.1 418 41.1
Sabra08G0111700 Salix brachista HOM05D006873 ORTHO05D008668 3.9e-65 253.1 331 49.8
TWI18G0196 Tripterygium wilfordii HOM05D006873 ORTHO05D008668 3.9e-65 253.1 402 43.0
VMungo1215G0960 Vigna mungo HOM05D006873 ORTHO05D008668 6.6e-65 252.3 450 42.4
GSVIVG01020168001 Vitis vinifera HOM05D006873 ORTHO05D008668 1.9e-64 250.8 293 51.2
Glyma.02G030100 Glycine max HOM05D006873 ORTHO05D008668 3.3e-64 250.0 334 46.7
Prupe.1G259500 Prunus persica HOM05D006873 ORTHO05D008668 3.3e-64 250.0 517 38.3
Cc11_g14280 Coffea canephora HOM05D006873 ORTHO05D008668 4.3e-64 249.6 317 47.6
PSO063G4822 Papaver somniferum HOM05D006873 ORTHO05D008668 9.6e-64 248.4 420 41.0
Glyma.01G035700 Glycine max HOM05D006873 ORTHO05D008668 1.6e-63 247.7 336 45.5
ECA234G0329 Erigeron canadensis HOM05D000967 ORTHO05D000796 3.6e-63 246.5 322 48.4
COL.COLO4_37899 Corchorus olitorius HOM05D006873 ORTHO05D008668 8.1e-63 245.4 286 50.0
Lsat_1_v5_gn_8_160241 Lactuca sativa HOM05D006873 ORTHO05D008668 1.8e-62 244.2 327 48.0
HanXRQChr08g0209031 Helianthus annuus HOM05D006873 ORTHO05D008668 4.0e-62 243.0 321 47.0
Lalb_Chr05g0217211 Lupinus albus HOM05D006873 ORTHO05D008668 6.9e-62 242.3 347 44.1
TPR.G13500 Trifolium pratense HOM05D006873 ORTHO05D008668 1.5e-61 241.1 331 46.5
Eucgr.B02558 Eucalyptus grandis HOM05D006873 ORTHO05D008668 3.8e-60 236.5 341 46.6
Sc11g0001350 Simmondsia chinensis HOM05D006873 ORTHO05D008668 4.9e-60 236.1 318 45.3
ClCG09G020710 Citrullus lanatus HOM05D006873 ORTHO05D008668 6.4e-60 235.7 338 45.9
MELO3C002912.2 Cucumis melo HOM05D006873 ORTHO05D008668 6.4e-60 235.7 401 44.1
Migut.L01442 Erythranthe guttata HOM05D006873 ORTHO05D008668 6.4e-60 235.7 506 38.5
arahy.Tifrunner.gnm1.ann1.MXA56B Arachis hypogaea HOM05D006873 ORTHO05D008668 2.4e-59 233.8 392 39.5
Medtr5g035330 Medicago truncatula HOM05D006873 ORTHO05D008668 2.4e-59 233.8 326 44.2
MD16G1087500 Malus domestica HOM05D006873 ORTHO05D008668 7.1e-59 232.3 412 42.0
unitig_26.g10334 Utricularia gibba HOM05D006873 ORTHO05D008668 1.2e-58 231.5 418 43.8
Ca_04627_v3 Cicer arietinum L. HOM05D006873 ORTHO05D008668 1.0e-57 228.4 323 46.1
arahy.Tifrunner.gnm1.ann1.8WMT1Z Arachis hypogaea HOM05D006873 ORTHO05D008668 2.5e-56 223.8 426 37.6
arahy.Tifrunner.gnm1.ann1.RPT3RX Arachis hypogaea HOM05D006873 ORTHO05D009096 3.3e-56 223.4 422 37.4
THA.LOC104823082 Tarenaya hassleriana HOM05D006873 ORTHO05D008668 3.3e-56 223.4 410 39.5
FAN07G2203 Fragaria x ananassa HOM05D006873 ORTHO05D008668 1.3e-55 221.5 569 34.3
Sp5g25330 Schrenkiella parvula HOM05D006873 ORTHO05D008668 3.7e-55 219.9 527 37.0
Oeu001659.1 Olea europaea HOM05D006873 ORTHO05D008668 5.3e-54 216.1 248 52.4
Hund25317 Selenicereus undatus HOM05D006873 ORTHO05D008668 5.3e-54 216.1 326 43.3
Sed0022830 Sechium edule HOM05D006873 ORTHO05D008668 6.9e-54 215.7 338 42.3
Thhalv10018395m.g Eutrema salsugineum HOM05D006873 ORTHO05D008668 7.6e-53 212.2 408 38.7
arahy.Tifrunner.gnm1.ann1.N2BTYN Arachis hypogaea HOM05D006873 ORTHO05D008668 1.0e-52 211.8 426 36.4
EL10Ac6g13256 Beta vulgaris HOM05D006873 ORTHO05D008668 1.3e-52 211.5 442 38.7
CDE07G1306 Ceratophyllum demersum HOM05D005206 ORTHO05D006219 2.2e-52 210.7 327 43.4
FvH4_4g34980 Fragaria vesca HOM05D006873 ORTHO05D008668 2.2e-52 210.7 562 34.0
Carub.0002s1690 Capsella rubella HOM05D006873 ORTHO05D008668 1.4e-51 208.0 428 36.4
AUR62020959 Chenopodium quinoa HOM05D006873 ORTHO05D008668 1.4e-51 208.0 335 43.0
FAN17G1454 Fragaria x ananassa HOM05D006873 ORTHO05D008668 1.4e-51 208.0 573 34.7
CARHR063320 Cardamine hirsuta HOM05D006873 ORTHO05D008668 1.9e-51 207.6 484 35.7
FAN22G1812 Fragaria x ananassa HOM05D006873 ORTHO05D008668 1.9e-51 207.6 570 33.3
RcHm_v2.0_Chr4g0444501 Rosa chinensis HOM05D006873 ORTHO05D008668 1.9e-51 207.6 440 37.0
A07p31180 Brassica napus HOM05D006873 ORTHO05D008668 7.1e-51 205.7 412 37.4
BraA07t30751Z Brassica rapa HOM05D006873 ORTHO05D008668 7.1e-51 205.7 411 38.7
ATR1149G030 Amborella trichopoda HOM05D006873 ORTHO05D008668 5.1e-49 199.5 327 42.8
AT1G70200 Arabidopsis thaliana HOM05D006873 ORTHO05D008668 5.1e-49 199.5 432 36.1
AL2G29500 Arabidopsis lyrata HOM05D006873 ORTHO05D008668 6.7e-49 199.1 427 36.1
BcaB03g15534 Brassica carinata HOM05D006873 ORTHO05D008668 8.7e-49 198.7 423 35.7
C06p36230 Brassica napus HOM05D006873 ORTHO05D008668 8.7e-49 198.7 418 37.6
BcaC08g45836 Brassica carinata HOM05D006873 ORTHO05D008668 1.5e-48 198.0 417 37.6
Aa31LG4G10700 Aethionema arabicum HOM05D006873 ORTHO05D008668 1.9e-48 197.6 532 36.3
BolC6t38744H Brassica oleracea HOM05D006873 ORTHO05D008668 7.4e-48 195.7 419 37.5
Psat2g111440 Pisum sativum HOM05D006873 ORTHO05D008668 4.6e-42 176.4 229 52.4
Ah.04g149970 Amaranthus hybridus HOM05D006873 ORTHO05D008668 1.6e-39 167.9 418 36.8
MBI15_g12637_MAGBIO Magnolia biondii HOM05D006873 ORTHO05D008668 3.7e-39 166.8 263 44.5
CsaV3_5G025700 Cucumis sativus L. HOM05D006873 ORTHO05D008668 5.3e-38 162.9 261 41.8
HPP92_005898 Vanilla planifolia HOM05D006873 ORTHO05D008668 5.3e-38 162.9 327 35.2
CDE04G1917 Ceratophyllum demersum HOM05D000231 ORTHO05D008668 8.5e-36 155.6 306 38.6
SEGI_33585 Sequoiadendron giganteum HOM05D006873 ORTHO05D008668 2.1e-34 151.0 153 49.0
Mapoly0001s0497 Marchantia polymorpha HOM05D006873 ORTHO05D008668 7.4e-32 142.5 173 41.6
Os02g0326200 Oryza sativa ssp. japonica HOM05D006873 ORTHO05D008668 1.7e-31 141.4 164 48.2
Zm00001eb234150 Zea mays HOM05D006873 ORTHO05D008668 8.2e-31 139.0 152 50.7
CBR_g81555 Chara braunii HOM05D006873 ORTHO05D000353 1.6e-26 124.8 228 33.8
AagrBONN_evm.TU.Sc2ySwM_362.2365 Anthoceros agrestis HOM05D006873 ORTHO05D008668 4.7e-26 123.2 298 32.9
SMO146G0062 Selaginella moellendorffii HOM05D006873 ORTHO05D008668 1.4e-25 121.7 187 36.4
Pp3c1_41900 Physcomitrium patens HOM05D006873 ORTHO05D008668 8.8e-25 119.0 317 29.0
Duzib251G0321 Durio zibethinus HOM05D006873 ORTHO05D008668 1.1e-24 118.6 136 47.1
Oeu001660.1 Olea europaea HOM05D006873 ORTHO05D008668 1.0e-20 105.5 122 46.7
AUR62018459 Chenopodium quinoa HOM05D000676 ORTHO05D001458 4.7e-18 96.7 65 66.2
CsaV3_5G025690 Cucumis sativus L. HOM05D006873 ORTHO05D008668 4.1e-14 83.6 68 58.8
CsaV3_5G025680 Cucumis sativus L. HOM05D006873 ORTHO05D008668 3.5e-13 80.5 68 57.4
Ah.13g077500 Amaranthus hybridus HOM05D006873 ORTHO05D008668 1.6e-10 71.6 52 59.6
vmacro16295 Vaccinium macrocarpon HOM05D006873 ORTHO05D008668 1.4e-09 68.6 139 41.0
GSVIVG01020169001 Vitis vinifera HOM05D006873 ORTHO05D008668 5.3e-06 56.6 85 41.2


User provided reference genes

Program Settings