Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006835 Camellia sinensis var. sinensis HOM05D001184 ORTHO05D007940 2.0e-37 158.7 84 100.0
CSS0018170 Camellia sinensis var. sinensis HOM05D001184 ORTHO05D003397 5.4e-19 97.4 58 91.4
CSS0036533 Camellia sinensis var. sinensis HOM05D001184 ORTHO05D003397 5.4e-19 97.4 58 91.4
Rhsim02G0172200 Rhododendron simsii HOM05D001184 ORTHO05D003397 3.5e-18 94.7 57 87.7
Actinidia29359 Actinidia chinensis HOM05D001184 ORTHO05D003397 1.0e-17 93.2 115 53.0
vmacro11026 Vaccinium macrocarpon HOM05D001184 ORTHO05D003397 1.9e-16 89.0 57 80.7
TAR362G0810 Trochodendron aralioides HOM05D001184 ORTHO05D003397 5.6e-16 87.4 58 77.6
TAR633G0494 Trochodendron aralioides HOM05D001184 ORTHO05D003397 5.6e-16 87.4 115 49.6
GSVIVG01020924001 Vitis vinifera HOM05D001184 ORTHO05D003397 5.6e-16 87.4 56 83.9
Cpa.g.sc83.20 Carica papaya HOM05D001184 ORTHO05D003397 9.5e-16 86.7 54 81.5
QL10p065779 Quercus lobata HOM05D001184 ORTHO05D003397 1.2e-15 86.3 114 47.4
Haze_03548 Corylus avellana HOM05D001184 ORTHO05D003397 1.6e-15 85.9 58 74.1
COL.COLO4_20192 Corchorus olitorius HOM05D001184 ORTHO05D003397 4.7e-15 84.3 54 79.6
Atru.chr13.1877 Acer truncatum HOM05D001184 ORTHO05D003397 1.1e-14 83.2 115 48.7
Duzib212G0797 Durio zibethinus HOM05D001184 ORTHO05D003397 1.1e-14 83.2 54 77.8
Potri.017G057700 Populus trichocarpa HOM05D001184 ORTHO05D003397 1.4e-14 82.8 56 76.8
QL10p064653 Quercus lobata HOM05D001184 ORTHO05D003397 1.8e-14 82.4 58 70.7
Ciclev10004343m.g Citrus clementina HOM05D001184 ORTHO05D003397 2.4e-14 82.0 60 73.3
Atru.chr4.1616 Acer truncatum HOM05D001184 ORTHO05D003397 3.1e-14 81.6 115 47.8
Eucgr.H00043 Eucalyptus grandis HOM05D001184 ORTHO05D003397 3.1e-14 81.6 59 76.3
Manes.15G055300 Manihot esculenta HOM05D001184 ORTHO05D003397 3.1e-14 81.6 58 74.1
Potri.001G317500 Populus trichocarpa HOM05D001184 ORTHO05D003397 5.2e-14 80.9 54 75.9
PGR142G4368 Punica granatum HOM05D001184 ORTHO05D003397 5.2e-14 80.9 58 67.2
Sabra17G0050800 Salix brachista HOM05D001184 ORTHO05D003397 5.2e-14 80.9 54 75.9
CiPaw.02G065500 Carya illinoinensis HOM05D001184 ORTHO05D003397 8.9e-14 80.1 58 70.7
CDE08G1095 Ceratophyllum demersum HOM05D001184 ORTHO05D003397 8.9e-14 80.1 62 67.7
GSVIVG01038361001 Vitis vinifera HOM05D001184 ORTHO05D003397 1.2e-13 79.7 61 68.9
Sabra16G0200900 Salix brachista HOM05D001184 ORTHO05D003397 2.0e-13 79.0 54 74.1
Hund18999 Selenicereus undatus HOM05D001184 ORTHO05D003397 2.0e-13 79.0 53 73.6
Duzib268G0787 Durio zibethinus HOM05D001184 ORTHO05D003397 2.6e-13 78.6 54 74.1
Nitab4.5_0002365g0060 Nicotiana tabacum HOM05D001184 ORTHO05D003397 2.6e-13 78.6 60 76.7
Sopen07g004890 Solanum pennellii HOM05D001184 ORTHO05D003397 2.6e-13 78.6 60 75.0
MD04G1013400 Malus domestica HOM05D001184 ORTHO05D003397 4.4e-13 77.8 53 81.1
Phvul.011G020800 Phaseolus vulgaris HOM05D001184 ORTHO05D003397 4.4e-13 77.8 58 69.0
EL10Ac3g07475 Beta vulgaris HOM05D001184 ORTHO05D003397 5.8e-13 77.4 55 70.9
CAN.G305.8 Capsicum annuum HOM05D001184 ORTHO05D003397 5.8e-13 77.4 59 72.9
Lj3g0023242 Lotus japonicus HOM05D001184 ORTHO05D003397 5.8e-13 77.4 58 69.0
PGSC0003DMG400028753 Solanum tuberosum HOM05D001184 ORTHO05D003397 5.8e-13 77.4 60 73.3
Nitab4.5_0000366g0090 Nicotiana tabacum HOM05D001184 ORTHO05D003397 7.6e-13 77.0 60 75.0
SalBow8G1842 Salvia bowleyana HOM05D001184 ORTHO05D003397 7.6e-13 77.0 60 73.3
SalBow8G3376 Salvia bowleyana HOM05D001184 ORTHO05D003397 7.6e-13 77.0 60 73.3
Glyma.12G018400 Glycine max HOM05D001184 ORTHO05D003397 9.9e-13 76.6 58 69.0
Psat7g171920 Pisum sativum HOM05D001184 ORTHO05D003397 9.9e-13 76.6 62 67.7
VMungo1127G0354 Vigna mungo HOM05D001184 ORTHO05D003397 9.9e-13 76.6 58 69.0
arahy.Tifrunner.gnm1.ann1.28RW3P Arachis hypogaea HOM05D001184 ORTHO05D003397 1.3e-12 76.3 58 70.7
arahy.Tifrunner.gnm1.ann1.P6K76F Arachis hypogaea HOM05D001184 ORTHO05D003397 1.3e-12 76.3 58 70.7
CDE06G0050 Ceratophyllum demersum HOM05D001184 ORTHO05D003397 1.3e-12 76.3 62 67.7
AUR62020841 Chenopodium quinoa HOM05D001184 ORTHO05D003397 1.3e-12 76.3 55 70.9
MBI06_g27434_MAGBIO Magnolia biondii HOM05D001184 ORTHO05D003397 1.3e-12 76.3 58 77.6
Peaxi162Scf00324g00227 Petunia axillaris HOM05D001184 ORTHO05D003397 1.3e-12 76.3 60 73.3
DCAR_026633 Daucus carota HOM05D001184 ORTHO05D003397 1.7e-12 75.9 58 72.4
Hma1.2p1_0187F.1_g082410 Hydrangea macrophylla HOM05D001184 ORTHO05D003397 1.7e-12 75.9 58 70.7
Lalb_Chr01g0000971 Lupinus albus HOM05D001184 ORTHO05D003397 1.7e-12 75.9 56 69.6
Peaxi162Scf00423g00134 Petunia axillaris HOM05D001184 ORTHO05D003397 1.7e-12 75.9 63 66.7
Prupe.1G159500 Prunus persica HOM05D001184 ORTHO05D003397 1.7e-12 75.9 53 81.1
Prupe.2G130800 Prunus persica HOM05D001184 ORTHO05D003397 1.7e-12 75.9 53 81.1
Psat4g022000 Pisum sativum HOM05D001184 ORTHO05D003397 2.2e-12 75.5 58 63.8
AUR62018575 Chenopodium quinoa HOM05D001184 ORTHO05D003397 2.9e-12 75.1 55 69.1
Ca_04924_v3 Cicer arietinum L. HOM05D001184 ORTHO05D003397 4.9e-12 74.3 61 67.2
DCAR_023870 Daucus carota HOM05D001184 ORTHO05D003397 4.9e-12 74.3 58 69.0
FvH4_4g13560 Fragaria vesca HOM05D001184 ORTHO05D003397 4.9e-12 74.3 53 79.2
FAN12G0346 Fragaria x ananassa HOM05D001184 ORTHO05D003397 4.9e-12 74.3 53 79.2
FAN17G0017 Fragaria x ananassa HOM05D001184 ORTHO05D003397 4.9e-12 74.3 53 79.2
FAN22G0763 Fragaria x ananassa HOM05D001184 ORTHO05D003397 4.9e-12 74.3 53 79.2
Oeu049043.1 Olea europaea HOM05D001184 ORTHO05D003397 4.9e-12 74.3 54 77.8
Prupe.2G130000 Prunus persica HOM05D001184 ORTHO05D003397 4.9e-12 74.3 53 77.4
PGSC0003DMG400019113 Solanum tuberosum HOM05D001184 ORTHO05D007940 4.9e-12 74.3 63 66.7
MBI03_g42549_MAGBIO Magnolia biondii HOM05D001184 ORTHO05D003397 6.4e-12 73.9 58 69.0
MBI14_g29293_MAGBIO Magnolia biondii HOM05D001184 ORTHO05D003397 6.4e-12 73.9 58 69.0
TWI18G0923 Tripterygium wilfordii HOM05D001184 ORTHO05D003397 6.4e-12 73.9 58 69.0
Gohir.A09G206100 Gossypium hirsutum HOM05D001184 ORTHO05D003397 8.4e-12 73.6 53 71.7
Gohir.D09G199700 Gossypium hirsutum HOM05D001184 ORTHO05D003397 8.4e-12 73.6 53 71.7
Gorai.006G223400 Gossypium raimondii HOM05D001184 ORTHO05D003397 8.4e-12 73.6 53 71.7
PSO339G1617 Papaver somniferum HOM05D001184 ORTHO05D003397 8.4e-12 73.6 48 77.1
Ah.13g078060 Amaranthus hybridus HOM05D001184 ORTHO05D003397 1.1e-11 73.2 58 67.2
MSTRG.4233 Avicennia marina HOM05D001184 ORTHO05D003397 1.1e-11 73.2 54 74.1
RcHm_v2.0_Chr4g0414311 Rosa chinensis HOM05D001184 ORTHO05D003397 1.1e-11 73.2 53 77.4
THA.LOC104804806 Tarenaya hassleriana HOM05D001184 ORTHO05D003397 1.1e-11 73.2 56 69.6
PSO384G1210 Papaver somniferum HOM05D001184 ORTHO05D003397 1.4e-11 72.8 48 77.1
Nitab4.5_0002889g0080 Nicotiana tabacum HOM05D001184 ORTHO05D003397 1.9e-11 72.4 63 65.1
Nitab4.5_0009377g0030 Nicotiana tabacum HOM05D001184 ORTHO05D003397 1.9e-11 72.4 60 66.7
Oeu055765.1 Olea europaea HOM05D001184 ORTHO05D003397 1.9e-11 72.4 60 70.0
HanXRQChr15g0488241 Helianthus annuus HOM05D001184 ORTHO05D003397 2.4e-11 72.0 59 66.1
HPP92_020335 Vanilla planifolia HOM05D001184 ORTHO05D003397 2.4e-11 72.0 58 69.0
Sed0003636 Sechium edule HOM05D001184 ORTHO05D003397 3.2e-11 71.6 59 66.1
Sed0027305 Sechium edule HOM05D001184 ORTHO05D003397 3.2e-11 71.6 59 66.1
ClCG06G008040 Citrullus lanatus HOM05D001184 ORTHO05D003397 4.1e-11 71.2 59 66.1
CsaV3_2G011140 Cucumis sativus L. HOM05D001184 ORTHO05D003397 4.1e-11 71.2 59 66.1
FAN07G0119 Fragaria x ananassa HOM05D001184 ORTHO05D003397 4.1e-11 71.2 53 75.5
MELO3C020358.2 Cucumis melo HOM05D001184 ORTHO05D003397 5.4e-11 70.9 59 66.1
SGA_v2.0_scaffold299G47730 Striga asiatica HOM05D001184 ORTHO05D003397 5.4e-11 70.9 59 69.5
Zm00001eb400100 Zea mays HOM05D001184 ORTHO05D003397 7.1e-11 70.5 76 55.3
Medtr4g077700 Medicago truncatula HOM05D001184 ORTHO05D003397 1.2e-10 69.7 59 64.4
CANSAT78G2277 Cannabis sativa HOM05D001184 ORTHO05D003397 1.6e-10 69.3 57 68.4
SGA_v2.0_scaffold163G38069 Striga asiatica HOM05D001184 ORTHO05D003397 1.6e-10 69.3 59 67.8
Thecc.04G199200 Theobroma cacao HOM05D001184 ORTHO05D003397 2.1e-10 68.9 55 69.1
Lalb_Chr19g0139901 Lupinus albus HOM05D001184 ORTHO05D003397 2.7e-10 68.6 58 65.5
Cc03_g08090 Coffea canephora HOM05D001184 ORTHO05D003397 3.5e-10 68.2 58 67.2
Medtr4g122580 Medicago truncatula HOM05D001184 ORTHO05D003397 3.5e-10 68.2 58 60.3
Nn2g14202 Nelumbo nucifera HOM05D001184 ORTHO05D007940 3.5e-10 68.2 58 63.8
CDE02G1448 Ceratophyllum demersum HOM05D001184 ORTHO05D003397 4.6e-10 67.8 58 63.8
Zm00001eb008700 Zea mays HOM05D001184 ORTHO05D003397 4.6e-10 67.8 76 53.9
ATR0987G002 Amborella trichopoda HOM05D001184 ORTHO05D003397 6.0e-10 67.4 76 55.3
SHI11900 Sapria himalayana HOM05D001184 ORTHO05D003397 6.0e-10 67.4 59 67.8
TWI12G1242 Tripterygium wilfordii HOM05D001184 ORTHO05D003397 6.0e-10 67.4 58 60.3
BraA08t32681Z Brassica rapa HOM05D001184 ORTHO05D003397 1.0e-09 66.6 53 62.3
Nn3g19994 Nelumbo nucifera HOM05D001184 ORTHO05D003397 1.0e-09 66.6 58 70.7
Zm00001eb189910 Zea mays HOM05D001184 ORTHO05D003397 1.0e-09 66.6 54 64.8
Sp7g11570 Schrenkiella parvula HOM05D001184 ORTHO05D003397 1.3e-09 66.2 53 62.3
THA.LOC104808703 Tarenaya hassleriana HOM05D001184 ORTHO05D003397 1.7e-09 65.9 58 62.1
A08p06650 Brassica napus HOM05D001184 ORTHO05D003397 3.0e-09 65.1 53 60.4
Aqoxy5G03290 Aquilegia oxysepala HOM05D001184 ORTHO05D003397 3.9e-09 64.7 44 72.7
SEGI_18693 Sequoiadendron giganteum HOM05D001184 ORTHO05D003397 3.9e-09 64.7 57 64.9
Aa31LG9G3730 Aethionema arabicum HOM05D001184 ORTHO05D003397 8.7e-09 63.5 53 62.3
AagrBONN_evm.TU.Sc2ySwM_368.2348 Anthoceros agrestis HOM05D001184 ORTHO05D003397 1.1e-08 63.2 41 73.2
Migut.O00219 Erythranthe guttata HOM05D001184 ORTHO05D003397 1.1e-08 63.2 31 100.0
ECA247G2182 Erigeron canadensis HOM05D001184 ORTHO05D003397 1.9e-08 62.4 73 52.1
BcaC02g09391 Brassica carinata HOM05D001184 ORTHO05D003397 2.5e-08 62.0 53 58.5
A04p08440 Brassica napus HOM05D001184 ORTHO05D003397 2.5e-08 62.0 53 58.5
C04p42150 Brassica napus HOM05D001184 ORTHO05D003397 2.5e-08 62.0 53 58.5
BolC4t25796H Brassica oleracea HOM05D001184 ORTHO05D003397 2.5e-08 62.0 53 58.5
BraA04t16533Z Brassica rapa HOM05D001184 ORTHO05D003397 2.5e-08 62.0 53 58.5
AUR62037694 Chenopodium quinoa HOM05D001184 ORTHO05D000001 2.5e-08 62.0 55 65.5
Thhalv10024450m.g Eutrema salsugineum HOM05D001184 ORTHO05D003397 3.3e-08 61.6 53 56.6
Lsat_1_v5_gn_2_46341 Lactuca sativa HOM05D001184 ORTHO05D003397 4.3e-08 61.2 41 73.2
Nn1g07935 Nelumbo nucifera HOM05D001184 ORTHO05D003397 5.6e-08 60.8 31 93.5
HPP92_023535 Vanilla planifolia HOM05D001184 ORTHO05D003397 7.3e-08 60.5 52 67.3
AagrBONN_evm.TU.Sc2ySwM_344.2232 Anthoceros agrestis HOM05D001184 ORTHO05D003397 9.6e-08 60.1 56 58.9
BcaB02g08652 Brassica carinata HOM05D001184 ORTHO05D003397 9.6e-08 60.1 54 59.3
Aa31LG9G3770 Aethionema arabicum HOM05D001184 ORTHO05D007940 1.2e-07 59.7 54 61.1
C08p07710 Brassica napus HOM05D001184 ORTHO05D003397 1.2e-07 59.7 48 60.4
BolC8t47619H Brassica oleracea HOM05D001184 ORTHO05D003397 1.2e-07 59.7 48 60.4
CARHR219660 Cardamine hirsuta HOM05D001184 ORTHO05D003397 1.2e-07 59.7 53 56.6
TPR.G34293 Trifolium pratense HOM05D001184 ORTHO05D003397 1.2e-07 59.7 62 53.2
Mapoly0045s0011 Marchantia polymorpha HOM05D001184 ORTHO05D003397 1.6e-07 59.3 60 63.3
BcaC07g37333 Brassica carinata HOM05D001184 ORTHO05D003397 2.1e-07 58.9 53 56.6
PSO339G2903 Papaver somniferum HOM05D001184 ORTHO05D003397 2.8e-07 58.5 36 77.8
AagrBONN_evm.TU.Sc2ySwM_228.3561 Anthoceros agrestis HOM05D001184 ORTHO05D003397 3.6e-07 58.2 56 57.1
Carub.0007s2868 Capsella rubella HOM05D001184 ORTHO05D003397 3.6e-07 58.2 58 51.7
Lj7C738G14 Lonicera japonica HOM05D000109 ORTHO05D000210 4.7e-07 57.8 30 90.0
Aa31LG4G12540 Aethionema arabicum HOM05D001184 ORTHO05D003397 8.1e-07 57.0 53 58.5
CBR_g55333 Chara braunii HOM05D001184 ORTHO05D003397 8.1e-07 57.0 54 61.1
Sc11g0005860 Simmondsia chinensis HOM05D001184 ORTHO05D008450 8.1e-07 57.0 57 56.1
AL7G42740 Arabidopsis lyrata HOM05D001184 ORTHO05D003397 1.1e-06 56.6 58 48.3
AT4G13780 Arabidopsis thaliana HOM05D001184 ORTHO05D003397 1.1e-06 56.6 53 52.8
Pp3c13_2300 Physcomitrium patens HOM05D001184 ORTHO05D003397 3.1e-06 55.1 32 78.1
unitig_32.g10864 Utricularia gibba HOM05D001184 ORTHO05D003397 4.0e-06 54.7 60 56.7
Pp3c15_24000 Physcomitrium patens HOM05D001184 ORTHO05D008450 6.9e-06 53.9 58 53.4


User provided reference genes

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