Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005906 Camellia sinensis var. sinensis HOM05D002336 ORTHO05D002526 4.1e-66 254.6 129 100.0
CSS0011496 Camellia sinensis var. sinensis HOM05D002336 ORTHO05D002526 1.8e-26 122.9 86 76.7
Actinidia02276 Actinidia chinensis HOM05D002336 ORTHO05D002526 5.7e-20 101.3 93 60.2
Hma1.2p1_0394F.1_g143540 Hydrangea macrophylla HOM05D002336 ORTHO05D002526 8.3e-19 97.4 86 60.5
Rhsim13G0138400 Rhododendron simsii HOM05D002336 ORTHO05D002526 1.8e-18 96.3 84 61.9
QL03p035757 Quercus lobata HOM05D002336 ORTHO05D002526 5.9e-17 91.3 83 57.8
Sp2g12487 Schrenkiella parvula HOM05D002336 ORTHO05D002526 1.0e-16 90.5 93 48.4
Eucgr.D00945 Eucalyptus grandis HOM05D002336 ORTHO05D002526 1.3e-16 90.1 86 54.7
A02p31610 Brassica napus HOM05D002336 ORTHO05D002526 3.0e-16 89.0 86 51.2
BolC2t10989H Brassica oleracea HOM05D000111 ORTHO05D007071 3.0e-16 89.0 86 51.2
BraA02t08164Z Brassica rapa HOM05D002336 ORTHO05D002526 3.0e-16 89.0 86 51.2
Dinv07137 Davidia involucrata HOM05D002336 ORTHO05D002526 3.0e-16 89.0 76 63.2
QL05p066607 Quercus lobata HOM05D002336 ORTHO05D002526 3.0e-16 89.0 88 54.5
Nn1g07725 Nelumbo nucifera HOM05D002336 ORTHO05D002526 6.6e-16 87.8 84 53.6
THA.LOC104823021 Tarenaya hassleriana HOM05D002336 ORTHO05D002526 6.6e-16 87.8 84 51.2
vmacro03592 Vaccinium macrocarpon HOM05D002336 ORTHO05D002526 6.6e-16 87.8 90 55.6
CiPaw.10G083700 Carya illinoinensis HOM05D002336 ORTHO05D002526 8.6e-16 87.4 85 55.3
PGR004G0111 Punica granatum HOM05D002336 ORTHO05D002526 8.6e-16 87.4 92 51.1
MELO3C007997.2 Cucumis melo HOM05D002336 ORTHO05D002526 1.1e-15 87.0 96 46.9
Thhalv10001026m.g Eutrema salsugineum HOM05D002336 ORTHO05D002526 1.9e-15 86.3 89 46.1
Manes.09G085000 Manihot esculenta HOM05D002336 ORTHO05D002526 3.3e-15 85.5 86 52.3
CsaV3_6G048110 Cucumis sativus L. HOM05D002336 ORTHO05D002526 4.3e-15 85.1 96 45.8
CANSAT56G2025 Cannabis sativa HOM05D002336 ORTHO05D002526 5.6e-15 84.7 94 48.9
Sed0019231 Sechium edule HOM05D002336 ORTHO05D002526 7.3e-15 84.3 91 48.4
Cfa000015 Carpinus fangiana HOM05D002336 ORTHO05D002526 9.5e-15 84.0 82 54.9
Gohir.D06G163600 Gossypium hirsutum HOM05D002336 ORTHO05D002526 9.5e-15 84.0 93 50.5
Gorai.010G190700 Gossypium raimondii HOM05D002336 ORTHO05D002526 9.5e-15 84.0 93 50.5
Gohir.A06G157300 Gossypium hirsutum HOM05D002336 ORTHO05D002526 4.7e-14 81.6 93 48.4
CAN.G1456.5 Capsicum annuum HOM05D002336 ORTHO05D002526 6.2e-14 81.3 84 51.2
Prupe.4G002300 Prunus persica HOM05D002336 ORTHO05D002526 6.2e-14 81.3 86 51.2
Thecc.06G242900 Theobroma cacao HOM05D002336 ORTHO05D002526 6.2e-14 81.3 86 52.3
GSVIVG01003467001 Vitis vinifera HOM05D002336 ORTHO05D002526 6.2e-14 81.3 91 47.3
Phvul.006G135800 Phaseolus vulgaris HOM05D002336 ORTHO05D002526 1.8e-13 79.7 81 49.4
Psat1g171880 Pisum sativum HOM05D002336 ORTHO05D002526 1.8e-13 79.7 87 47.1
Ca_00777_v3 Cicer arietinum L. HOM05D000491 ORTHO05D000359 2.3e-13 79.3 120 40.8
Duzib235G0330 Durio zibethinus HOM05D002336 ORTHO05D002526 3.1e-13 79.0 86 51.2
Duzib235G1184 Durio zibethinus HOM05D002336 ORTHO05D002526 3.1e-13 79.0 86 51.2
MD05G1363300 Malus domestica HOM05D002336 ORTHO05D002526 3.1e-13 79.0 86 46.5
Sc17g0008060 Simmondsia chinensis HOM05D002336 ORTHO05D002526 3.1e-13 79.0 102 46.1
Atru.chr1.2178 Acer truncatum HOM05D002336 ORTHO05D002526 4.0e-13 78.6 89 44.9
Peaxi162Scf00811g00442 Petunia axillaris HOM05D002336 ORTHO05D002526 4.0e-13 78.6 86 48.8
COL.COLO4_31953 Corchorus olitorius HOM05D002336 ORTHO05D002526 5.2e-13 78.2 86 47.7
Lj6g0012975 Lotus japonicus HOM05D002336 ORTHO05D002526 5.2e-13 78.2 81 50.6
MD10G1340900 Malus domestica HOM05D002336 ORTHO05D002526 6.8e-13 77.8 86 46.5
TWI38G0736 Tripterygium wilfordii HOM05D002336 ORTHO05D002526 6.8e-13 77.8 93 47.3
VMungo0540G1254 Vigna mungo HOM05D002336 ORTHO05D002526 6.8e-13 77.8 82 48.8
Glyma.15G121800 Glycine max HOM05D002336 ORTHO05D002526 1.5e-12 76.6 84 45.2
unitig_32.g11410 Utricularia gibba HOM05D002336 ORTHO05D002526 2.6e-12 75.9 84 52.4
Aqoxy3G03324 Aquilegia oxysepala HOM05D002336 ORTHO05D002526 3.4e-12 75.5 89 48.3
MSTRG.16067 Avicennia marina HOM05D002336 ORTHO05D002526 3.4e-12 75.5 85 52.9
Carub.0007s2571 Capsella rubella HOM05D002336 ORTHO05D002526 4.4e-12 75.1 91 44.0
SGA_v2.0_scaffold7G03662 Striga asiatica HOM05D002336 ORTHO05D002526 4.4e-12 75.1 84 50.0
Cc09_g00160 Coffea canephora HOM05D002336 ORTHO05D002526 5.8e-12 74.7 93 45.2
Rhsim02G0089300 Rhododendron simsii HOM05D000002 ORTHO05D000001 7.5e-12 74.3 84 52.4
AL7G39320 Arabidopsis lyrata HOM05D002336 ORTHO05D002526 9.8e-12 73.9 91 44.0
SGA_v2.0_scaffold186G40142 Striga asiatica HOM05D002336 ORTHO05D002526 1.3e-11 73.6 84 48.8
AUR62014931 Chenopodium quinoa HOM05D002336 ORTHO05D002526 2.9e-11 72.4 85 45.9
AUR62015177 Chenopodium quinoa HOM05D002336 ORTHO05D002526 2.9e-11 72.4 85 45.9
Medtr2g027530 Medicago truncatula HOM05D002336 ORTHO05D002526 2.9e-11 72.4 91 44.0
EL10Ac9g22885 Beta vulgaris HOM05D002336 ORTHO05D002526 3.7e-11 72.0 85 45.9
Lalb_Chr20g0119621 Lupinus albus HOM05D002336 ORTHO05D002526 3.7e-11 72.0 84 46.4
Solyc04g015180.3 Solanum lycopersicum HOM05D002336 ORTHO05D002526 4.9e-11 71.6 86 44.2
Sopen04g007220 Solanum pennellii HOM05D002336 ORTHO05D002526 4.9e-11 71.6 86 44.2
ECA248G0907 Erigeron canadensis HOM05D002336 ORTHO05D002526 6.4e-11 71.2 92 43.5
Migut.M01463 Erythranthe guttata HOM05D002336 ORTHO05D002526 6.4e-11 71.2 85 50.6
Potri.016G003200 Populus trichocarpa HOM05D002336 ORTHO05D002526 1.1e-10 70.5 82 48.8
Sabra16G0008400 Salix brachista HOM05D000456 ORTHO05D000887 1.1e-10 70.5 79 50.6
Glyma.09G016100 Glycine max HOM05D002336 ORTHO05D002526 1.4e-10 70.1 79 44.3
RcHm_v2.0_Chr5g0000271 Rosa chinensis HOM05D002336 ORTHO05D002526 1.9e-10 69.7 86 45.3
Lalb_Chr18g0057441 Lupinus albus HOM05D002336 ORTHO05D002526 2.4e-10 69.3 91 39.6
MBI17_g08176_MAGBIO Magnolia biondii HOM05D002336 ORTHO05D002526 3.2e-10 68.9 107 41.1
Oeu025979.1 Olea europaea HOM05D002336 ORTHO05D002526 3.2e-10 68.9 89 46.1
Oeu031381.1 Olea europaea HOM05D002336 ORTHO05D002526 5.4e-10 68.2 89 46.1
Nitab4.5_0010199g0060 Nicotiana tabacum HOM05D002336 ORTHO05D002526 7.0e-10 67.8 101 41.6
Lj5g0017254 Lotus japonicus HOM05D002336 ORTHO05D002526 9.2e-10 67.4 76 50.0
Aa31sc504G30 Aethionema arabicum HOM05D002336 ORTHO05D002526 1.6e-09 66.6 64 45.3
MBI19_g01939_MAGBIO Magnolia biondii HOM05D002336 ORTHO05D002526 2.0e-09 66.2 97 41.2
arahy.Tifrunner.gnm1.ann1.WK75UE Arachis hypogaea HOM05D002336 ORTHO05D002526 3.5e-09 65.5 82 42.7
HanXRQChr01g0005731 Helianthus annuus HOM05D002336 ORTHO05D002526 3.5e-09 65.5 95 40.0
C02p48950 Brassica napus HOM05D002336 ORTHO05D002526 6.0e-09 64.7 61 50.8
CARHR290530 Cardamine hirsuta HOM05D002336 ORTHO05D002526 6.0e-09 64.7 91 39.6
CDE07G0676 Ceratophyllum demersum HOM05D002336 ORTHO05D002526 7.8e-09 64.3 85 42.4
FvH4_3g00201 Fragaria vesca HOM05D002336 ORTHO05D002526 7.8e-09 64.3 88 40.9
ECA220G0003 Erigeron canadensis HOM05D002336 ORTHO05D002526 1.7e-08 63.2 102 39.2
Os02g0723300 Oryza sativa ssp. japonica HOM05D002336 ORTHO05D002526 3.0e-08 62.4 100 35.0
Hund21625 Selenicereus undatus HOM05D002336 ORTHO05D002526 3.0e-08 62.4 81 43.2
PSO210G4730 Papaver somniferum HOM05D002336 ORTHO05D002526 3.9e-08 62.0 82 41.5
SalBow8G5548 Salvia bowleyana HOM05D002336 ORTHO05D002526 5.0e-08 61.6 76 50.0
FAN21G1357 Fragaria x ananassa HOM05D002336 ORTHO05D002526 6.6e-08 61.2 88 39.8
PSO210G5018 Papaver somniferum HOM05D002336 ORTHO05D002526 6.6e-08 61.2 82 41.5
HPP92_000509 Vanilla planifolia HOM05D002336 ORTHO05D002526 6.6e-08 61.2 101 34.7
ClCG01G021110 Citrullus lanatus HOM05D002336 ORTHO05D002526 8.6e-08 60.8 68 44.1
Zm00001eb189090 Zea mays HOM05D002336 ORTHO05D002526 8.6e-08 60.8 100 35.0
arahy.Tifrunner.gnm1.ann1.7YIN9J Arachis hypogaea HOM05D002336 ORTHO05D002526 1.1e-07 60.5 67 44.8
Prupe.4G017900 Prunus persica HOM05D002336 ORTHO05D002526 1.1e-07 60.5 61 50.8
Ah.01g002070 Amaranthus hybridus HOM05D002336 ORTHO05D002526 1.9e-07 59.7 50 54.0
Ciclev10016499m.g Citrus clementina HOM05D002336 ORTHO05D002526 4.3e-07 58.5 94 36.2
Nitab4.5_0002426g0100 Nicotiana tabacum HOM05D002336 ORTHO05D002526 4.3e-07 58.5 90 31.1
Rhsim08G0216900 Rhododendron simsii HOM05D002659 ORTHO05D002526 4.3e-07 58.5 69 50.7
ATR0618G064 Amborella trichopoda HOM05D002336 ORTHO05D002526 5.6e-07 58.2 91 31.9
Sc15g0006500 Simmondsia chinensis HOM05D002336 ORTHO05D002526 5.6e-07 58.2 90 36.7
Actinidia27104 Actinidia chinensis HOM05D002336 ORTHO05D002526 1.2e-06 57.0 90 34.4
Nitab4.5_0000147g0240 Nicotiana tabacum HOM05D002336 ORTHO05D002526 1.2e-06 57.0 86 40.7
CSS0019375 Camellia sinensis var. sinensis HOM05D002336 ORTHO05D002526 2.8e-06 55.8 90 33.3
Mapoly0173s0018 Marchantia polymorpha HOM05D002336 ORTHO05D002526 2.8e-06 55.8 99 34.3
Rhsim02G0083000 Rhododendron simsii HOM05D002336 ORTHO05D002526 2.8e-06 55.8 90 33.3
HPP92_022163 Vanilla planifolia HOM05D002336 ORTHO05D002526 2.8e-06 55.8 93 33.3
CSS0001624 Camellia sinensis var. sinensis HOM05D002336 ORTHO05D002526 3.6e-06 55.5 90 33.3
CSS0043110 Camellia sinensis var. sinensis HOM05D002336 ORTHO05D002526 3.6e-06 55.5 90 33.3
CAN.G1463.20 Capsicum annuum HOM05D002336 ORTHO05D002526 3.6e-06 55.5 90 32.2
Peaxi162Scf00098g01412 Petunia axillaris HOM05D002336 ORTHO05D002526 3.6e-06 55.5 90 33.3
Hma1.2p1_0981F.1_g243690 Hydrangea macrophylla HOM05D002336 ORTHO05D002526 4.7e-06 55.1 90 32.2
Hma1.2p1_1034F.1_g250410 Hydrangea macrophylla HOM05D002336 ORTHO05D002526 4.7e-06 55.1 90 32.2
Pp3c9_19820 Physcomitrium patens HOM05D002336 ORTHO05D002526 4.7e-06 55.1 89 33.7
Aa31LG3G17210 Aethionema arabicum HOM05D002336 ORTHO05D002526 6.2e-06 54.7 97 30.9
Nitab4.5_0002183g0070 Nicotiana tabacum HOM05D002336 ORTHO05D002526 6.2e-06 54.7 90 32.2
Peaxi162Scf00717g00212 Petunia axillaris HOM05D002336 ORTHO05D002526 6.2e-06 54.7 90 31.1
Hund08720 Selenicereus undatus HOM05D002336 ORTHO05D002526 6.2e-06 54.7 90 34.4
Solyc06g073870.4 Solanum lycopersicum HOM05D002336 ORTHO05D002526 6.2e-06 54.7 90 32.2
Sopen06g030280 Solanum pennellii HOM05D002336 ORTHO05D002526 6.2e-06 54.7 90 32.2
PGSC0003DMG400005907 Solanum tuberosum HOM05D002336 ORTHO05D002526 6.2e-06 54.7 90 32.2
Eucgr.I00318 Eucalyptus grandis HOM05D002336 ORTHO05D002526 8.1e-06 54.3 90 32.2


User provided reference genes

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