Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001365 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 2.7e-49 198.4 102 100.0
CSS0005878 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 2.7e-49 198.4 102 100.0
Cpa.g.sc20.93 Carica papaya HOM05D005026 ORTHO05D005981 9.7e-39 163.3 126 68.3
Actinidia21465 Actinidia chinensis HOM05D005026 ORTHO05D005981 2.8e-38 161.8 126 69.0
CSS0005811 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 4.8e-38 161.0 126 68.3
Nn3g19196 Nelumbo nucifera HOM05D005026 ORTHO05D005981 6.3e-38 160.6 126 69.0
GSVIVG01024009001 Vitis vinifera HOM05D005026 ORTHO05D005981 8.2e-38 160.2 126 68.3
Gohir.A01G169500 Gossypium hirsutum HOM05D005026 ORTHO05D005981 1.1e-37 159.8 126 66.7
Gohir.D01G160600 Gossypium hirsutum HOM05D005026 ORTHO05D005981 1.1e-37 159.8 126 66.7
Gorai.002G199000 Gossypium raimondii HOM05D005026 ORTHO05D005981 1.1e-37 159.8 126 66.7
TAR629G1604 Trochodendron aralioides HOM05D005026 ORTHO05D005981 1.8e-37 159.1 126 67.5
Duzib132G0031 Durio zibethinus HOM05D005026 ORTHO05D005981 2.4e-37 158.7 126 65.9
Actinidia28532 Actinidia chinensis HOM05D005026 ORTHO05D005981 3.1e-37 158.3 126 67.5
COL.COLO4_17353 Corchorus olitorius HOM05D005026 ORTHO05D005981 3.1e-37 158.3 126 65.9
MBI02_g23401_MAGBIO Magnolia biondii HOM05D005026 ORTHO05D005981 3.1e-37 158.3 126 67.5
Thecc.02G058400 Theobroma cacao HOM05D005026 ORTHO05D005981 3.1e-37 158.3 126 65.9
Gohir.D04G167700 Gossypium hirsutum HOM05D005026 ORTHO05D005981 4.1e-37 157.9 126 66.7
Gorai.012G156000 Gossypium raimondii HOM05D005026 ORTHO05D005981 4.1e-37 157.9 126 66.7
Lj5A178G71 Lonicera japonica HOM05D005026 ORTHO05D005981 4.1e-37 157.9 126 66.7
CAN.G216.1 Capsicum annuum HOM05D005026 ORTHO05D005981 5.3e-37 157.5 126 65.9
Nn1g09206 Nelumbo nucifera HOM05D005026 ORTHO05D005981 7.0e-37 157.1 126 67.5
Rhsim05G0054500 Rhododendron simsii HOM05D005026 ORTHO05D005981 7.0e-37 157.1 126 67.5
Gohir.A04G131300 Gossypium hirsutum HOM05D005026 ORTHO05D005981 9.1e-37 156.8 126 65.9
Potri.004G176200 Populus trichocarpa HOM05D005026 ORTHO05D005981 1.2e-36 156.4 126 64.3
Manes.11G096700 Manihot esculenta HOM05D005026 ORTHO05D005981 1.6e-36 156.0 126 63.5
Sc18g0006400 Simmondsia chinensis HOM05D005026 ORTHO05D005981 2.0e-36 155.6 126 64.3
Aqoxy3G02662 Aquilegia oxysepala HOM05D005026 ORTHO05D005981 2.7e-36 155.2 126 67.5
Lsat_1_v5_gn_4_71761 Lactuca sativa HOM05D005026 ORTHO05D005981 2.7e-36 155.2 126 65.9
PSO782G1462 Papaver somniferum HOM05D005026 ORTHO05D005981 2.7e-36 155.2 126 65.9
Peaxi162Scf00042g00232 Petunia axillaris HOM05D005026 ORTHO05D005981 2.7e-36 155.2 126 64.3
Nitab4.5_0002763g0050 Nicotiana tabacum HOM05D005026 ORTHO05D005981 3.5e-36 154.8 123 65.9
Sabra04G0118300 Salix brachista HOM05D005026 ORTHO05D005981 3.5e-36 154.8 126 64.3
Atru.chr5.3373 Acer truncatum HOM05D005026 ORTHO05D005981 4.5e-36 154.5 126 65.1
Nitab4.5_0005236g0010 Nicotiana tabacum HOM05D005026 ORTHO05D005981 7.7e-36 153.7 126 64.3
THA.LOC104819652 Tarenaya hassleriana HOM05D005026 ORTHO05D005981 7.7e-36 153.7 126 64.3
EL10Ac9g21369 Beta vulgaris HOM05D005026 ORTHO05D005981 1.3e-35 152.9 126 63.5
Solyc10g055640.2 Solanum lycopersicum HOM05D005026 ORTHO05D005981 1.3e-35 152.9 126 63.5
Sopen10g025430 Solanum pennellii HOM05D005026 ORTHO05D005981 1.3e-35 152.9 126 63.5
PGSC0003DMG400026715 Solanum tuberosum HOM05D005026 ORTHO05D005981 1.3e-35 152.9 126 63.5
ClCG02G011990 Citrullus lanatus HOM05D005026 ORTHO05D005981 1.7e-35 152.5 126 63.5
Cc09_g09870 Coffea canephora HOM05D005026 ORTHO05D005981 1.7e-35 152.5 126 64.3
vmacro17340 Vaccinium macrocarpon HOM05D005026 ORTHO05D005981 1.7e-35 152.5 126 65.1
AUR62010035 Chenopodium quinoa HOM05D005026 ORTHO05D005981 2.9e-35 151.8 126 63.5
Ciclev10028903m.g Citrus clementina HOM05D005026 ORTHO05D005981 2.9e-35 151.8 126 63.5
PGR142G1000 Punica granatum HOM05D005026 ORTHO05D005981 2.9e-35 151.8 126 61.9
TWI79G0831 Tripterygium wilfordii HOM05D005026 ORTHO05D005981 2.9e-35 151.8 126 62.7
CsaV3_2G016150 Cucumis sativus L. HOM05D005026 ORTHO05D005981 3.8e-35 151.4 126 63.5
PSO063G0001 Papaver somniferum HOM05D005026 ORTHO05D005981 3.8e-35 151.4 126 65.1
MSTRG.16919 Avicennia marina HOM05D005026 ORTHO05D005981 6.5e-35 150.6 126 63.5
AUR62013023 Chenopodium quinoa HOM05D005026 ORTHO05D005981 6.5e-35 150.6 126 62.7
Ah.01g008260 Amaranthus hybridus HOM05D005026 ORTHO05D005981 8.5e-35 150.2 126 62.7
MELO3C020824.2 Cucumis melo HOM05D005026 ORTHO05D005981 8.5e-35 150.2 126 62.7
Oeu032531.1 Olea europaea HOM05D005026 ORTHO05D005981 8.5e-35 150.2 126 62.7
Sed0021554 Sechium edule HOM05D005026 ORTHO05D005981 1.5e-34 149.4 126 62.7
Os06g0711600 Oryza sativa ssp. japonica HOM05D005026 ORTHO05D005981 1.9e-34 149.1 126 64.3
ECA234G1034 Erigeron canadensis HOM05D005026 ORTHO05D005981 2.5e-34 148.7 126 61.9
Sc14g0002280 Simmondsia chinensis HOM05D005026 ORTHO05D005981 3.2e-34 148.3 102 73.5
unitig_578.g16751 Utricularia gibba HOM05D005026 ORTHO05D005981 4.2e-34 147.9 126 61.1
Eucgr.I01430 Eucalyptus grandis HOM05D005026 ORTHO05D005981 5.5e-34 147.5 126 61.9
Sed0002674 Sechium edule HOM05D005026 ORTHO05D005981 5.5e-34 147.5 126 61.9
ATR0665G437 Amborella trichopoda HOM05D005026 ORTHO05D005981 7.2e-34 147.1 126 61.1
DCAR_022946 Daucus carota HOM05D005026 ORTHO05D005981 7.2e-34 147.1 126 62.7
CARHR107140 Cardamine hirsuta HOM05D005026 ORTHO05D005981 9.4e-34 146.7 126 61.1
Ah.01g023090 Amaranthus hybridus HOM05D005026 ORTHO05D005981 1.2e-33 146.4 126 60.3
Glyma.10G281500 Glycine max HOM05D005026 ORTHO05D005981 1.6e-33 146.0 125 61.6
Glyma.20G107700 Glycine max HOM05D005026 ORTHO05D005981 1.6e-33 146.0 125 61.6
Hma1.2p1_0163F.1_g072550 Hydrangea macrophylla HOM05D005026 ORTHO05D005981 2.7e-33 145.2 126 62.7
Zm00001eb272560 Zea mays HOM05D005026 ORTHO05D005981 2.7e-33 145.2 126 62.7
Lj5g0027913 Lotus japonicus HOM05D005026 ORTHO05D005981 3.6e-33 144.8 125 61.6
FvH4_2g15441 Fragaria vesca HOM05D005026 ORTHO05D005981 4.7e-33 144.4 126 61.1
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 4.7e-33 144.4 126 61.1
FAN24G0982 Fragaria x ananassa HOM05D005026 ORTHO05D005981 4.7e-33 144.4 126 61.1
Zm00001eb227710 Zea mays HOM05D005026 ORTHO05D005981 4.7e-33 144.4 126 62.7
Ca_11210_v3 Cicer arietinum L. HOM05D005026 ORTHO05D005981 6.1e-33 144.1 125 60.8
arahy.Tifrunner.gnm1.ann1.UBN13B Arachis hypogaea HOM05D005026 ORTHO05D005981 1.0e-32 143.3 125 60.8
arahy.Tifrunner.gnm1.ann1.Y470YU Arachis hypogaea HOM05D005026 ORTHO05D005981 1.0e-32 143.3 125 60.8
FAN20G3067 Fragaria x ananassa HOM05D005026 ORTHO05D005981 1.0e-32 143.3 126 60.3
Medtr1g112640 Medicago truncatula HOM05D005026 ORTHO05D005981 1.0e-32 143.3 125 60.8
AL3G49570 Arabidopsis lyrata HOM05D005026 ORTHO05D005981 1.4e-32 142.9 126 59.5
MD05G1122700 Malus domestica HOM05D005026 ORTHO05D005981 1.4e-32 142.9 125 60.0
CDE06G2829 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 1.8e-32 142.5 126 60.3
VMungo0720G0105 Vigna mungo HOM05D005026 ORTHO05D005981 1.8e-32 142.5 125 60.0
HanXRQChr10g0300791 Helianthus annuus HOM05D005026 ORTHO05D005981 2.3e-32 142.1 126 59.5
HanXRQChr10g0300841 Helianthus annuus HOM05D005026 ORTHO05D005981 2.3e-32 142.1 126 59.5
RcHm_v2.0_Chr6g0278411 Rosa chinensis HOM05D005026 ORTHO05D005981 2.3e-32 142.1 126 60.3
SalBow1G5110 Salvia bowleyana HOM05D005026 ORTHO05D005981 2.3e-32 142.1 126 61.1
Sp3g30150 Schrenkiella parvula HOM05D005026 ORTHO05D005981 2.3e-32 142.1 126 58.7
Thhalv10022788m.g Eutrema salsugineum HOM05D005026 ORTHO05D005981 3.0e-32 141.7 126 58.7
AT2G16860 Arabidopsis thaliana HOM05D005026 ORTHO05D005981 4.0e-32 141.4 126 58.7
Carub.0003s3066 Capsella rubella HOM05D005026 ORTHO05D005981 5.2e-32 141.0 126 58.7
TPR.G2421 Trifolium pratense HOM05D005026 ORTHO05D005981 5.2e-32 141.0 125 60.0
Aa31LG8G14070 Aethionema arabicum HOM05D005026 ORTHO05D005981 6.8e-32 140.6 126 58.7
Lalb_Chr02g0143411 Lupinus albus HOM05D005026 ORTHO05D005981 6.8e-32 140.6 125 59.2
Lalb_Chr06g0163661 Lupinus albus HOM05D005026 ORTHO05D005981 6.8e-32 140.6 125 59.2
Cfa005253 Carpinus fangiana HOM05D005026 ORTHO05D005981 8.8e-32 140.2 125 59.2
CDE04G3302 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 8.8e-32 140.2 126 59.5
Haze_02129 Corylus avellana HOM05D005026 ORTHO05D005981 8.8e-32 140.2 125 59.2
Prupe.8G166600 Prunus persica HOM05D005026 ORTHO05D005981 8.8e-32 140.2 126 59.5
A07p04280 Brassica napus HOM05D005026 ORTHO05D005981 1.2e-31 139.8 126 57.9
BraA07t28219Z Brassica rapa HOM05D005026 ORTHO05D005981 1.2e-31 139.8 126 57.9
CANSAT78G2332 Cannabis sativa HOM05D005026 ORTHO05D005981 1.5e-31 139.4 126 59.5
Migut.N01326 Erythranthe guttata HOM05D005026 ORTHO05D005981 1.5e-31 139.4 126 59.5
Phvul.007G019200 Phaseolus vulgaris HOM05D005026 ORTHO05D005981 1.5e-31 139.4 126 58.7
BcaC06g36185 Brassica carinata HOM05D005026 ORTHO05D005981 2.6e-31 138.7 126 57.9
C07p06780 Brassica napus HOM05D005026 ORTHO05D005981 2.6e-31 138.7 126 57.9
BolC7t41099H Brassica oleracea HOM05D005026 ORTHO05D005981 2.6e-31 138.7 126 57.9
BcaB03g16411 Brassica carinata HOM05D005026 ORTHO05D005981 4.4e-31 137.9 126 57.1
Oeu015515.5 Olea europaea HOM05D005026 ORTHO05D005981 5.7e-31 137.5 121 60.3
QL11p050624 Quercus lobata HOM05D005026 ORTHO05D005981 5.7e-31 137.5 125 57.6
QL11p050879 Quercus lobata HOM05D005026 ORTHO05D005981 5.7e-31 137.5 125 57.6
CiPaw.05G083000 Carya illinoinensis HOM05D005026 ORTHO05D005981 1.7e-30 136.0 125 56.0
CAN.G641.54 Capsicum annuum HOM05D005026 ORTHO05D005981 3.7e-30 134.8 117 61.5
PGSC0003DMG400010588 Solanum tuberosum HOM05D005026 ORTHO05D005981 4.8e-30 134.4 127 57.5
Sopen07g025840 Solanum pennellii HOM05D005026 ORTHO05D005981 9.1e-29 130.2 127 55.1
Peaxi162Scf00042g02315 Petunia axillaris HOM05D005026 ORTHO05D005981 4.5e-28 127.9 126 57.9
Pp3c18_8200 Physcomitrium patens HOM05D005026 ORTHO05D005981 4.2e-26 121.3 126 51.6
Mapoly0011s0013 Marchantia polymorpha HOM05D005026 ORTHO05D005981 7.2e-26 120.6 126 52.4
Ciclev10023429m.g Citrus clementina HOM05D005026 ORTHO05D005981 1.6e-25 119.4 129 51.9
HanXRQChr05g0128751 Helianthus annuus HOM05D005026 ORTHO05D005981 3.6e-25 118.2 116 54.3
Sed0003938 Sechium edule HOM05D005026 ORTHO05D005981 1.8e-21 105.9 103 54.4
SMO143G0164 Selaginella moellendorffii HOM05D005026 ORTHO05D005981 4.5e-20 101.3 126 44.4
HPP92_003763 Vanilla planifolia HOM05D005026 ORTHO05D005981 4.3e-18 94.7 73 64.4
RcHm_v2.0_Chr1g0323251 Rosa chinensis HOM05D005026 ORTHO05D005981 1.6e-17 92.8 121 47.1
Solyc08g067460.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 6.1e-17 90.9 103 55.3
HanXRQChr10g0300831 Helianthus annuus HOM05D005026 ORTHO05D005981 6.8e-16 87.4 72 63.9
CBR_g18651 Chara braunii HOM05D005026 ORTHO05D005981 1.2e-15 86.7 110 43.6
Sopen08g021400 Solanum pennellii HOM05D005026 ORTHO05D005981 3.4e-15 85.1 104 50.0
Psat0s3098g0080 Pisum sativum HOM05D005026 ORTHO05D005981 9.8e-15 83.6 72 59.7
AagrBONN_evm.TU.Sc2ySwM_344.1326 Anthoceros agrestis HOM05D005026 ORTHO05D005981 6.0e-12 74.3 72 52.8
Duzib052G0155 Durio zibethinus HOM05D005026 ORTHO05D005981 2.5e-10 68.9 41 75.6
MBI18_g05076_MAGBIO Magnolia biondii HOM05D005026 ORTHO05D005981 1.4e-08 63.2 38 81.6
TAR624G0203 Trochodendron aralioides HOM05D005026 ORTHO05D005981 1.8e-08 62.8 37 83.8
HPP92_021456 Vanilla planifolia HOM05D005026 ORTHO05D005981 1.5e-07 59.7 47 61.7
TAR624G1238 Trochodendron aralioides HOM05D005026 ORTHO05D005981 3.4e-07 58.5 42 69.0


User provided reference genes

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