Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005811 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 3.7e-174 614.8 311 100.0
Actinidia21465 Actinidia chinensis HOM05D005026 ORTHO05D005981 8.6e-155 550.4 311 89.1
vmacro17340 Vaccinium macrocarpon HOM05D005026 ORTHO05D005981 9.9e-151 537.0 311 85.5
Rhsim05G0054500 Rhododendron simsii HOM05D005026 ORTHO05D005981 4.3e-146 521.5 311 83.3
Hma1.2p1_0163F.1_g072550 Hydrangea macrophylla HOM05D005026 ORTHO05D005981 2.7e-140 502.3 311 81.0
GSVIVG01024009001 Vitis vinifera HOM05D005026 ORTHO05D005981 4.0e-136 488.4 315 80.3
Peaxi162Scf00042g00232 Petunia axillaris HOM05D005026 ORTHO05D005981 2.6e-135 485.7 310 79.7
Nitab4.5_0005236g0010 Nicotiana tabacum HOM05D005026 ORTHO05D005981 1.3e-134 483.4 311 79.1
CAN.G216.1 Capsicum annuum HOM05D005026 ORTHO05D005981 3.8e-134 481.9 311 78.5
CsaV3_2G016150 Cucumis sativus L. HOM05D005026 ORTHO05D005981 2.4e-133 479.2 317 75.7
ClCG02G011990 Citrullus lanatus HOM05D005026 ORTHO05D005981 1.2e-132 476.9 317 75.4
Atru.chr5.3373 Acer truncatum HOM05D005026 ORTHO05D005981 2.1e-132 476.1 311 76.2
TAR629G1604 Trochodendron aralioides HOM05D005026 ORTHO05D005981 2.1e-132 476.1 313 77.3
Thecc.02G058400 Theobroma cacao HOM05D005026 ORTHO05D005981 4.6e-132 474.9 311 77.8
MELO3C020824.2 Cucumis melo HOM05D005026 ORTHO05D005981 6.0e-132 474.6 317 75.1
Solyc10g055640.2 Solanum lycopersicum HOM05D005026 ORTHO05D005981 1.0e-131 473.8 311 77.2
Ciclev10028903m.g Citrus clementina HOM05D005026 ORTHO05D005981 1.3e-131 473.4 309 77.3
Sed0021554 Sechium edule HOM05D005026 ORTHO05D005981 1.3e-131 473.4 316 75.9
PGSC0003DMG400026715 Solanum tuberosum HOM05D005026 ORTHO05D005981 1.8e-131 473.0 311 77.2
Nn3g19196 Nelumbo nucifera HOM05D005026 ORTHO05D005981 5.1e-131 471.5 313 77.0
Cc09_g09870 Coffea canephora HOM05D005026 ORTHO05D005981 6.7e-131 471.1 311 75.2
Gohir.D01G160600 Gossypium hirsutum HOM05D005026 ORTHO05D005981 1.1e-130 470.3 311 78.5
Gorai.002G199000 Gossypium raimondii HOM05D005026 ORTHO05D005981 1.1e-130 470.3 311 78.5
Sopen10g025430 Solanum pennellii HOM05D005026 ORTHO05D005981 1.1e-130 470.3 311 76.8
Potri.004G176200 Populus trichocarpa HOM05D005026 ORTHO05D005981 1.5e-130 469.9 311 77.5
Gohir.A01G169500 Gossypium hirsutum HOM05D005026 ORTHO05D005981 3.3e-130 468.8 311 78.1
Prupe.8G166600 Prunus persica HOM05D005026 ORTHO05D005981 3.3e-130 468.8 311 75.2
Cfa005253 Carpinus fangiana HOM05D005026 ORTHO05D005981 1.3e-129 466.8 311 76.5
Nitab4.5_0002763g0050 Nicotiana tabacum HOM05D005026 ORTHO05D005981 1.3e-129 466.8 311 77.8
ECA234G1034 Erigeron canadensis HOM05D005026 ORTHO05D005981 3.7e-129 465.3 311 76.5
Gohir.D04G167700 Gossypium hirsutum HOM05D005026 ORTHO05D005981 3.7e-129 465.3 312 76.9
Gorai.012G156000 Gossypium raimondii HOM05D005026 ORTHO05D005981 3.7e-129 465.3 312 76.9
FvH4_2g15441 Fragaria vesca HOM05D005026 ORTHO05D005981 8.1e-129 464.2 314 74.2
FAN24G0982 Fragaria x ananassa HOM05D005026 ORTHO05D005981 8.1e-129 464.2 314 74.2
Sabra04G0118300 Salix brachista HOM05D005026 ORTHO05D005981 8.1e-129 464.2 311 76.5
PGR142G1000 Punica granatum HOM05D005026 ORTHO05D005981 1.4e-128 463.4 311 74.6
Gohir.A04G131300 Gossypium hirsutum HOM05D005026 ORTHO05D005981 6.9e-128 461.1 312 76.3
COL.COLO4_17353 Corchorus olitorius HOM05D005026 ORTHO05D005981 9.0e-128 460.7 309 77.3
RcHm_v2.0_Chr6g0278411 Rosa chinensis HOM05D005026 ORTHO05D005981 3.4e-127 458.8 313 73.2
Sed0002674 Sechium edule HOM05D005026 ORTHO05D005981 5.8e-127 458.0 316 73.4
HanXRQChr10g0300841 Helianthus annuus HOM05D005026 ORTHO05D005981 1.7e-126 456.4 311 73.3
Glyma.20G107700 Glycine max HOM05D005026 ORTHO05D005981 1.4e-125 453.4 316 72.8
DCAR_022946 Daucus carota HOM05D005026 ORTHO05D005981 1.9e-125 453.0 318 73.3
QL11p050624 Quercus lobata HOM05D005026 ORTHO05D005981 2.5e-125 452.6 310 72.9
QL11p050879 Quercus lobata HOM05D005026 ORTHO05D005981 2.5e-125 452.6 310 72.9
Oeu032531.1 Olea europaea HOM05D005026 ORTHO05D005981 3.2e-125 452.2 315 73.7
EL10Ac9g21369 Beta vulgaris HOM05D005026 ORTHO05D005981 4.2e-125 451.8 311 74.6
Glyma.10G281500 Glycine max HOM05D005026 ORTHO05D005981 4.2e-125 451.8 317 72.2
VMungo0720G0105 Vigna mungo HOM05D005026 ORTHO05D005981 4.2e-125 451.8 317 72.6
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 1.2e-124 450.3 314 72.6
Lalb_Chr06g0163661 Lupinus albus HOM05D005026 ORTHO05D005981 1.2e-124 450.3 315 72.7
Eucgr.I01430 Eucalyptus grandis HOM05D005026 ORTHO05D005981 3.5e-124 448.7 313 75.1
CiPaw.05G083000 Carya illinoinensis HOM05D005026 ORTHO05D005981 1.0e-123 447.2 311 72.0
Lalb_Chr02g0143411 Lupinus albus HOM05D005026 ORTHO05D005981 1.0e-123 447.2 312 73.1
AUR62010035 Chenopodium quinoa HOM05D005026 ORTHO05D005981 1.3e-123 446.8 312 74.7
arahy.Tifrunner.gnm1.ann1.Y470YU Arachis hypogaea HOM05D005026 ORTHO05D005981 1.8e-123 446.4 312 73.7
CANSAT78G2332 Cannabis sativa HOM05D005026 ORTHO05D005981 2.3e-123 446.0 313 73.5
Manes.11G096700 Manihot esculenta HOM05D005026 ORTHO05D005981 2.3e-123 446.0 311 74.0
unitig_578.g16751 Utricularia gibba HOM05D005026 ORTHO05D005981 5.1e-123 444.9 311 73.6
Aqoxy3G02662 Aquilegia oxysepala HOM05D005026 ORTHO05D005981 6.7e-123 444.5 323 72.4
Phvul.007G019200 Phaseolus vulgaris HOM05D005026 ORTHO05D005981 6.7e-123 444.5 315 72.4
PSO782G1462 Papaver somniferum HOM05D005026 ORTHO05D005981 8.7e-123 444.1 311 72.3
MSTRG.16919 Avicennia marina HOM05D005026 ORTHO05D005981 1.5e-122 443.4 309 71.8
Lsat_1_v5_gn_4_71761 Lactuca sativa HOM05D005026 ORTHO05D005981 1.5e-122 443.4 311 73.3
Duzib132G0031 Durio zibethinus HOM05D005026 ORTHO05D005981 2.5e-122 442.6 349 66.8
arahy.Tifrunner.gnm1.ann1.UBN13B Arachis hypogaea HOM05D005026 ORTHO05D005981 4.3e-122 441.8 312 73.4
TWI79G0831 Tripterygium wilfordii HOM05D005026 ORTHO05D005981 1.3e-121 440.3 311 73.0
AUR62013023 Chenopodium quinoa HOM05D005026 ORTHO05D005981 2.1e-121 439.5 313 73.5
Lj5g0027913 Lotus japonicus HOM05D005026 ORTHO05D005981 2.1e-121 439.5 314 71.0
Ca_11210_v3 Cicer arietinum L. HOM05D005026 ORTHO05D005981 4.8e-121 438.3 312 70.5
PSO063G0001 Papaver somniferum HOM05D005026 ORTHO05D005981 6.2e-121 438.0 311 71.7
Cpa.g.sc20.93 Carica papaya HOM05D005026 ORTHO05D005981 4.0e-120 435.3 269 82.9
Migut.N01326 Erythranthe guttata HOM05D005026 ORTHO05D005981 9.0e-120 434.1 311 71.4
PGSC0003DMG400010588 Solanum tuberosum HOM05D005026 ORTHO05D005981 5.8e-119 431.4 312 72.1
TPR.G2421 Trifolium pratense HOM05D005026 ORTHO05D005981 1.7e-118 429.9 318 70.4
Ah.01g008260 Amaranthus hybridus HOM05D005026 ORTHO05D005981 2.9e-118 429.1 347 66.3
CDE04G3302 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 3.8e-118 428.7 313 69.3
Sp3g30150 Schrenkiella parvula HOM05D005026 ORTHO05D005981 3.8e-118 428.7 312 69.6
Haze_02129 Corylus avellana HOM05D005026 ORTHO05D005981 4.9e-118 428.3 291 74.9
CARHR107140 Cardamine hirsuta HOM05D005026 ORTHO05D005981 3.2e-117 425.6 311 70.1
Actinidia28532 Actinidia chinensis HOM05D005026 ORTHO05D005981 1.6e-116 423.3 265 83.4
MD05G1122700 Malus domestica HOM05D005026 ORTHO05D005981 1.0e-115 420.6 312 69.2
Carub.0003s3066 Capsella rubella HOM05D005026 ORTHO05D005981 5.1e-115 418.3 311 69.1
AL3G49570 Arabidopsis lyrata HOM05D005026 ORTHO05D005981 6.7e-115 417.9 311 69.5
Medtr1g112640 Medicago truncatula HOM05D005026 ORTHO05D005981 6.7e-115 417.9 315 68.6
SalBow1G5110 Salvia bowleyana HOM05D005026 ORTHO05D005981 1.1e-114 417.2 315 69.8
A07p04280 Brassica napus HOM05D005026 ORTHO05D005981 1.5e-114 416.8 311 68.8
BraA07t28219Z Brassica rapa HOM05D005026 ORTHO05D005981 1.5e-114 416.8 311 68.8
Thhalv10022788m.g Eutrema salsugineum HOM05D005026 ORTHO05D005981 1.9e-114 416.4 312 69.9
BcaB03g16411 Brassica carinata HOM05D005026 ORTHO05D005981 2.2e-113 412.9 311 67.8
BcaC06g36185 Brassica carinata HOM05D005026 ORTHO05D005981 2.2e-113 412.9 311 68.5
C07p06780 Brassica napus HOM05D005026 ORTHO05D005981 2.2e-113 412.9 311 68.5
BolC7t41099H Brassica oleracea HOM05D005026 ORTHO05D005981 2.2e-113 412.9 311 68.5
AT2G16860 Arabidopsis thaliana HOM05D005026 ORTHO05D005981 6.3e-113 411.4 311 68.2
Sopen07g025840 Solanum pennellii HOM05D005026 ORTHO05D005981 6.3e-113 411.4 312 68.6
Lj5A178G71 Lonicera japonica HOM05D005026 ORTHO05D005981 1.1e-112 410.6 273 78.4
Sc18g0006400 Simmondsia chinensis HOM05D005026 ORTHO05D005981 2.6e-111 406.0 314 67.5
Oeu015515.5 Olea europaea HOM05D005026 ORTHO05D005981 1.7e-110 403.3 336 64.0
Nn1g09206 Nelumbo nucifera HOM05D005026 ORTHO05D005981 9.4e-109 397.5 224 87.9
THA.LOC104819652 Tarenaya hassleriana HOM05D005026 ORTHO05D005981 1.4e-107 393.7 312 66.7
MBI02_g23401_MAGBIO Magnolia biondii HOM05D005026 ORTHO05D005981 4.3e-106 388.7 287 69.0
Ah.01g023090 Amaranthus hybridus HOM05D005026 ORTHO05D005981 4.1e-104 382.1 249 78.3
Os06g0711600 Oryza sativa ssp. japonica HOM05D005026 ORTHO05D005981 1.5e-103 380.2 332 60.2
CDE06G2829 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 2.0e-103 379.8 284 69.4
Zm00001eb227710 Zea mays HOM05D005026 ORTHO05D005981 1.1e-101 374.0 347 58.5
Zm00001eb272560 Zea mays HOM05D005026 ORTHO05D005981 3.2e-101 372.5 341 59.2
Mapoly0011s0013 Marchantia polymorpha HOM05D005026 ORTHO05D005981 3.7e-97 359.0 308 61.0
FAN20G3067 Fragaria x ananassa HOM05D005026 ORTHO05D005981 1.1e-96 357.5 269 68.0
Sc14g0002280 Simmondsia chinensis HOM05D005026 ORTHO05D005981 1.8e-96 356.7 311 64.3
HanXRQChr10g0300791 Helianthus annuus HOM05D005026 ORTHO05D005981 4.5e-95 352.1 203 85.2
Pp3c18_8200 Physcomitrium patens HOM05D005026 ORTHO05D005981 1.3e-94 350.5 320 57.8
ATR0665G437 Amborella trichopoda HOM05D005026 ORTHO05D005981 7.2e-93 344.7 211 81.0
Ciclev10023429m.g Citrus clementina HOM05D005026 ORTHO05D005981 1.1e-88 330.9 228 73.7
Sed0003938 Sechium edule HOM05D005026 ORTHO05D005981 1.8e-88 330.1 316 57.6
SMO143G0164 Selaginella moellendorffii HOM05D005026 ORTHO05D005981 1.0e-86 324.3 311 56.9
RcHm_v2.0_Chr1g0323251 Rosa chinensis HOM05D005026 ORTHO05D005981 1.2e-84 317.4 311 56.3
HanXRQChr05g0128751 Helianthus annuus HOM05D005026 ORTHO05D005981 4.8e-81 305.4 185 81.6
Peaxi162Scf00042g02315 Petunia axillaris HOM05D005026 ORTHO05D005981 1.0e-75 287.7 376 46.8
CAN.G641.54 Capsicum annuum HOM05D005026 ORTHO05D005981 2.0e-71 273.5 211 69.7
Aa31LG8G14070 Aethionema arabicum HOM05D005026 ORTHO05D005981 1.9e-69 266.9 297 51.9
Sopen08g021400 Solanum pennellii HOM05D005026 ORTHO05D005981 4.4e-66 255.8 250 60.8
CBR_g18651 Chara braunii HOM05D005026 ORTHO05D005981 5.7e-66 255.4 414 41.5
Solyc08g067460.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 3.9e-62 242.7 191 71.2
HanXRQChr10g0300831 Helianthus annuus HOM05D005026 ORTHO05D005981 5.4e-56 222.2 189 59.8
Solyc07g052200.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 9.5e-53 211.5 312 45.5
Duzib052G0155 Durio zibethinus HOM05D005026 ORTHO05D005981 6.4e-49 198.7 117 85.5
Cre01.g037400 Chlamydomonas reinhardtii HOM05D000144 ORTHO05D005981 1.4e-48 197.6 227 48.5
Psat0s3098g0080 Pisum sativum HOM05D005026 ORTHO05D005981 1.6e-47 194.1 194 55.7
MCO14G518 Micromonas commoda HOM05D000144 ORTHO05D005981 8.1e-44 181.8 220 47.3
HPP92_003763 Vanilla planifolia HOM05D005026 ORTHO05D005981 2.9e-41 173.3 118 72.9
PGSC0003DMG400010589 Solanum tuberosum HOM05D005026 ORTHO05D005981 1.4e-40 171.0 277 45.1
AagrBONN_evm.TU.Sc2ySwM_344.1326 Anthoceros agrestis HOM05D005026 ORTHO05D005981 7.8e-39 165.2 209 44.0
TAR624G0954 Trochodendron aralioides HOM05D005026 ORTHO05D005981 1.3e-38 164.5 95 85.3
RcHm_v2.0_Chr2g0134101 Rosa chinensis HOM05D005026 ORTHO05D005981 6.6e-38 162.2 195 48.2
CSS0001365 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 3.3e-37 159.8 126 68.3
CSS0005878 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 3.3e-37 159.8 126 68.3
BcaB03g16410 Brassica carinata HOM05D005026 ORTHO05D005981 8.9e-35 151.8 96 81.2
Actinidia00627 Actinidia chinensis HOM05D005026 ORTHO05D005981 2.6e-34 150.2 93 83.9
HPP92_021456 Vanilla planifolia HOM05D005026 ORTHO05D005981 2.6e-34 150.2 122 66.4
RcHm_v2.0_Chr6g0295751 Rosa chinensis HOM05D005026 ORTHO05D005981 3.8e-33 146.4 141 56.7
PGSC0003DMG400028947 Solanum tuberosum HOM05D005026 ORTHO05D005981 6.6e-30 135.6 80 85.0
TAR624G1238 Trochodendron aralioides HOM05D005026 ORTHO05D005981 1.3e-25 121.3 110 62.7
PRCOL_00006468 Prasinoderma coloniale HOM05D000144 ORTHO05D334079 3.8e-25 119.8 231 39.8
HPP92_021472 Vanilla planifolia HOM05D005026 ORTHO05D005981 3.9e-22 109.8 95 62.1
TAR624G0203 Trochodendron aralioides HOM05D005026 ORTHO05D005981 3.3e-21 106.7 64 84.4
Dinv14115 Davidia involucrata HOM05D005026 ORTHO05D005981 1.9e-13 80.9 40 85.0
Psat6g231960 Pisum sativum HOM05D005026 ORTHO05D005981 3.3e-13 80.1 130 40.0
MBI18_g05076_MAGBIO Magnolia biondii HOM05D005026 ORTHO05D005981 2.2e-09 67.4 43 76.7
Nn1g09215 Nelumbo nucifera HOM05D005026 ORTHO05D005981 1.9e-08 64.3 40 67.5
Pp3c21_12130 Physcomitrium patens HOM05D005026 ORTHO05D005981 5.5e-08 62.8 62 59.7
Duzib248G0175 Durio zibethinus HOM05D002972 ORTHO05D002272 7.1e-08 62.4 80 40.0
MBI11_g10320_MAGBIO Magnolia biondii HOM05D006846 ORTHO05D008473 7.1e-08 62.4 93 36.6
Rhsim10G0139600 Rhododendron simsii HOM05D000038 ORTHO05D000143 1.6e-07 61.2 57 63.2
COL.COLO4_17354 Corchorus olitorius HOM05D002972 ORTHO05D002272 4.6e-07 59.7 64 43.8
Potri.004G176100 Populus trichocarpa HOM05D002972 ORTHO05D002272 1.8e-06 57.8 44 54.5
Thecc.02G058300 Theobroma cacao HOM05D002972 ORTHO05D002272 3.0e-06 57.0 39 59.0
CsaV3_7G001090 Cucumis sativus L. HOM05D002972 ORTHO05D002272 5.1e-06 56.2 42 54.8
Sed0027632 Sechium edule HOM05D002972 ORTHO05D002272 5.1e-06 56.2 42 52.4


User provided reference genes

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