Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005545 Camellia sinensis var. sinensis HOM05D004741 ORTHO05D005454 7.1e-253 876.7 418 100.0
vmacro21376 Vaccinium macrocarpon HOM05D004741 ORTHO05D005454 2.8e-201 705.3 466 75.8
GSVIVG01009251001 Vitis vinifera HOM05D004741 ORTHO05D005454 1.0e-198 696.8 398 81.4
Dinv22023 Davidia involucrata HOM05D004741 ORTHO05D005454 3.9e-195 684.9 385 83.1
Lj4A81G69 Lonicera japonica HOM05D004741 ORTHO05D005454 5.3e-192 674.5 466 71.0
TAR625G0772 Trochodendron aralioides HOM05D004741 ORTHO05D005454 1.3e-190 669.8 417 76.0
CiPaw.07G232700 Carya illinoinensis HOM05D004741 ORTHO05D005454 3.2e-189 665.2 417 75.8
ECA246G1320 Erigeron canadensis HOM05D004741 ORTHO05D005454 1.2e-188 663.3 409 75.8
Nn8g39668 Nelumbo nucifera HOM05D004741 ORTHO05D005454 1.6e-188 662.9 411 76.6
DCAR_020033 Daucus carota HOM05D004741 ORTHO05D005454 3.0e-187 658.7 415 74.0
RcHm_v2.0_Chr6g0299131 Rosa chinensis HOM05D004741 ORTHO05D005454 6.7e-187 657.5 415 74.2
TWI32G1217 Tripterygium wilfordii HOM05D004741 ORTHO05D005454 6.7e-187 657.5 402 74.6
HanXRQChr10g0277671 Helianthus annuus HOM05D004741 ORTHO05D005454 1.2e-186 656.8 361 81.2
Oeu016078.1 Olea europaea HOM05D004741 ORTHO05D005454 7.5e-186 654.1 418 75.8
QL02p018098 Quercus lobata HOM05D004741 ORTHO05D005454 7.5e-186 654.1 418 73.9
MELO3C011313.2 Cucumis melo HOM05D004741 ORTHO05D005454 9.7e-186 653.7 416 74.0
FAN15G2922 Fragaria x ananassa HOM05D004741 ORTHO05D005454 1.7e-185 652.9 412 74.8
Aqoxy5G01951 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 3.7e-185 651.7 412 75.2
Atru.chr7.2571 Acer truncatum HOM05D004741 ORTHO05D005454 1.1e-184 650.2 401 74.1
ClCG08G013810 Citrullus lanatus HOM05D004741 ORTHO05D005454 2.4e-184 649.0 414 72.7
CsaV3_2G032600 Cucumis sativus L. HOM05D004741 ORTHO05D005454 4.1e-184 648.3 416 72.8
PSO210G2241 Papaver somniferum HOM05D004741 ORTHO05D005454 5.3e-184 647.9 400 74.8
FvH4_2g41360 Fragaria vesca HOM05D004741 ORTHO05D005454 7.0e-184 647.5 406 74.6
Lsat_1_v5_gn_6_106561 Lactuca sativa HOM05D004741 ORTHO05D005454 7.0e-184 647.5 395 75.4
EL10Ac1g02297 Beta vulgaris HOM05D004741 ORTHO05D005454 1.2e-183 646.7 412 74.8
Sc02g0008350 Simmondsia chinensis HOM05D004741 ORTHO05D005454 2.0e-183 646.0 419 74.2
AUR62035754 Chenopodium quinoa HOM05D004741 ORTHO05D005454 5.9e-183 644.4 417 74.6
CAN.G673.1 Capsicum annuum HOM05D004741 ORTHO05D005454 2.9e-182 642.1 413 73.6
Sed0002897 Sechium edule HOM05D004741 ORTHO05D005454 5.0e-182 641.3 416 71.4
Lsat_1_v5_gn_4_135621 Lactuca sativa HOM05D004741 ORTHO05D005454 6.5e-182 641.0 416 72.4
MSTRG.20476 Avicennia marina HOM05D004741 ORTHO05D005454 1.1e-181 640.2 418 72.7
PSO761G0470 Papaver somniferum HOM05D004741 ORTHO05D005454 2.5e-181 639.0 406 73.4
Thecc.09G013800 Theobroma cacao HOM05D004741 ORTHO05D005454 4.2e-181 638.3 416 72.8
Manes.03G006700 Manihot esculenta HOM05D004741 ORTHO05D005454 6.1e-180 634.4 417 72.7
Peaxi162Scf00005g04810 Petunia axillaris HOM05D004741 ORTHO05D005454 6.1e-180 634.4 410 74.6
Solyc07g017640.2 Solanum lycopersicum HOM05D004741 ORTHO05D005454 1.2e-178 630.2 416 71.9
Potri.018G015300 Populus trichocarpa HOM05D004741 ORTHO05D005454 2.0e-178 629.4 421 71.5
Cc00_g23510 Coffea canephora HOM05D004741 ORTHO05D005454 2.6e-178 629.0 414 69.8
MD15G1043800 Malus domestica HOM05D004741 ORTHO05D005454 3.4e-178 628.6 413 71.9
arahy.Tifrunner.gnm1.ann1.68HE9A Arachis hypogaea HOM05D004741 ORTHO05D005454 9.8e-178 627.1 418 70.8
arahy.Tifrunner.gnm1.ann1.HM8GSV Arachis hypogaea HOM05D004741 ORTHO05D005454 9.8e-178 627.1 418 70.8
Migut.K00575 Erythranthe guttata HOM05D004741 ORTHO05D005454 1.3e-177 626.7 418 69.6
Duzib168G2074 Durio zibethinus HOM05D004741 ORTHO05D005454 3.7e-177 625.2 425 70.4
Eucgr.C04030 Eucalyptus grandis HOM05D004741 ORTHO05D005454 3.7e-177 625.2 419 72.1
THA.LOC104803607 Tarenaya hassleriana HOM05D004741 ORTHO05D005454 3.1e-176 622.1 421 69.6
Cfa013018 Carpinus fangiana HOM05D004741 ORTHO05D005454 1.6e-175 619.8 412 71.6
Rhsim06G0068400 Rhododendron simsii HOM05D004741 ORTHO05D005454 2.0e-175 619.4 417 74.8
MBI16_g14670_MAGBIO Magnolia biondii HOM05D004741 ORTHO05D005454 3.5e-175 618.6 411 73.0
Sopen07g006470 Solanum pennellii HOM05D004741 ORTHO05D005454 3.5e-175 618.6 416 71.2
Glyma.04G059700 Glycine max HOM05D004741 ORTHO05D005454 1.0e-174 617.1 425 68.2
Medtr3g105810 Medicago truncatula HOM05D004741 ORTHO05D005454 2.5e-173 612.5 407 71.7
Lj1g0020479 Lotus japonicus HOM05D004741 ORTHO05D005454 3.2e-173 612.1 413 69.0
Lalb_Chr08g0244491 Lupinus albus HOM05D004741 ORTHO05D005454 4.2e-173 611.7 421 68.4
Ca_15788_v3 Cicer arietinum L. HOM05D004741 ORTHO05D005454 1.2e-172 610.1 407 70.5
Gohir.D11G176300 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.6e-172 608.6 415 68.7
VMungo1309G1293 Vigna mungo HOM05D004741 ORTHO05D005454 6.1e-172 607.8 403 69.0
Psat5g034520 Pisum sativum HOM05D004741 ORTHO05D005454 3.0e-171 605.5 412 68.9
Sabra18G0018800 Salix brachista HOM05D004741 ORTHO05D005454 4.0e-171 605.1 392 72.2
ATR0767G225 Amborella trichopoda HOM05D004741 ORTHO05D005454 8.8e-171 604.0 407 68.6
CDE06G0415 Ceratophyllum demersum HOM05D004741 ORTHO05D005454 3.4e-170 602.1 409 69.2
TPR.G1862 Trifolium pratense HOM05D004741 ORTHO05D005454 1.3e-169 600.1 368 74.7
PGSC0003DMG400002300 Solanum tuberosum HOM05D004741 ORTHO05D005454 1.1e-168 597.0 347 79.0
Nitab4.5_0006397g0010 Nicotiana tabacum HOM05D004741 ORTHO05D005454 2.0e-167 592.8 345 79.1
Aa31LG2G18560 Aethionema arabicum HOM05D004741 ORTHO05D005454 1.0e-166 590.5 413 65.9
COL.COLO4_18967 Corchorus olitorius HOM05D004741 ORTHO05D005454 8.6e-166 587.4 421 68.4
AT4G31770 Arabidopsis thaliana HOM05D004741 ORTHO05D005454 1.6e-164 583.2 420 66.4
CARHR239670 Cardamine hirsuta HOM05D004741 ORTHO05D005454 2.8e-164 582.4 422 66.4
BcaNung01502 Brassica carinata HOM05D004741 ORTHO05D005454 6.1e-164 581.3 411 65.2
BolC7t46334H Brassica oleracea HOM05D004741 ORTHO05D005454 6.1e-164 581.3 415 66.5
BcaNung04120 Brassica carinata HOM05D004741 ORTHO05D005454 8.0e-164 580.9 414 65.9
RcHm_v2.0_Chr2g0135121 Rosa chinensis HOM05D004741 ORTHO05D005454 1.4e-163 580.1 407 68.6
BraA03t15138Z Brassica rapa HOM05D004741 ORTHO05D005454 2.3e-163 579.3 415 65.8
Zm00001eb215780 Zea mays HOM05D004741 ORTHO05D005454 3.0e-163 578.9 415 66.0
A08p18460 Brassica napus HOM05D004741 ORTHO05D005454 5.7e-162 574.7 421 65.8
AL7G20240 Arabidopsis lyrata HOM05D004741 ORTHO05D005454 7.5e-162 574.3 415 65.5
Carub.0007s0879 Capsella rubella HOM05D004741 ORTHO05D005454 9.8e-162 573.9 421 65.3
C07p58870 Brassica napus HOM05D004741 ORTHO05D005454 1.7e-161 573.2 416 65.4
BcaB03g12718 Brassica carinata HOM05D004741 ORTHO05D005454 3.7e-161 572.0 423 65.7
unitig_744.g24377 Utricularia gibba HOM05D004741 ORTHO05D005454 1.1e-160 570.5 369 70.2
BraA08t33808Z Brassica rapa HOM05D004741 ORTHO05D005454 1.4e-160 570.1 421 65.3
A03p60970 Brassica napus HOM05D004741 ORTHO05D005454 3.2e-160 568.9 436 62.6
Thhalv10025305m.g Eutrema salsugineum HOM05D004741 ORTHO05D005454 5.4e-160 568.2 418 64.6
Phvul.009G085900 Phaseolus vulgaris HOM05D004741 ORTHO05D005454 9.2e-160 567.4 344 74.4
Sp7g29560 Schrenkiella parvula HOM05D004741 ORTHO05D005454 9.2e-160 567.4 393 66.7
C03p87550 Brassica napus HOM05D004741 ORTHO05D005454 1.9e-157 559.7 421 65.1
Aqoxy1G00870 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 2.5e-157 559.3 373 70.0
BolC3t21075H Brassica oleracea HOM05D004741 ORTHO05D005454 2.1e-156 556.2 427 64.4
Atru.BG.288.p Acer truncatum HOM05D004741 ORTHO05D005454 1.8e-155 553.1 376 67.3
SalBow7G0863 Salvia bowleyana HOM05D004741 ORTHO05D005454 8.9e-155 550.8 367 72.5
SalBow7G1987 Salvia bowleyana HOM05D004741 ORTHO05D005454 2.0e-154 549.7 367 72.5
Aqoxy4G02579 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 1.9e-152 543.1 368 71.2
Cpa.g.sc40.1 Carica papaya HOM05D004741 ORTHO05D005454 1.2e-148 530.4 300 79.0
Ah.04g152730 Amaranthus hybridus HOM05D004741 ORTHO05D005454 6.8e-147 524.6 446 60.8
HPP92_007721 Vanilla planifolia HOM05D004741 ORTHO05D005454 2.1e-143 513.1 384 62.8
SEGI_18909 Sequoiadendron giganteum HOM05D004741 ORTHO05D005454 5.1e-142 508.4 347 68.6
BcaNung01500 Brassica carinata HOM05D004741 ORTHO05D005454 4.3e-141 505.4 411 59.9
Mapoly0014s0124 Marchantia polymorpha HOM05D004741 ORTHO05D005454 7.8e-135 484.6 374 60.2
Gohir.1Z049533 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.6e-132 476.9 406 59.1
Pp3c24_19510 Physcomitrium patens HOM05D004741 ORTHO05D005454 3.6e-132 475.7 417 55.2
CBR_g10907 Chara braunii HOM05D004741 ORTHO05D005454 5.2e-131 471.9 414 55.1
SGA_v2.0_scaffold443G51691 Striga asiatica HOM05D004741 ORTHO05D005454 5.2e-131 471.9 409 58.2
Gohir.A02G000200 Gossypium hirsutum HOM05D004741 ORTHO05D005454 8.9e-131 471.1 362 63.3
Prupe.1G397300 Prunus persica HOM05D004741 ORTHO05D005454 4.4e-130 468.8 308 72.7
SMO145G0212 Selaginella moellendorffii HOM05D004741 ORTHO05D005454 7.6e-130 468.0 368 58.7
FvH4_6g29560 Fragaria vesca HOM05D004741 ORTHO05D005454 1.3e-129 467.2 349 65.6
Hund05236 Selenicereus undatus HOM05D004741 ORTHO05D005454 1.4e-128 463.8 325 68.3
AUR62033828 Chenopodium quinoa HOM05D004741 ORTHO05D005454 3.2e-128 462.6 377 62.3
FAN14G3005 Fragaria x ananassa HOM05D004741 ORTHO05D005454 4.2e-128 462.2 349 65.3
SMO284G0001 Selaginella moellendorffii HOM05D004741 ORTHO05D005454 4.2e-128 462.2 368 58.4
SGA_v2.0_scaffold48G18066 Striga asiatica HOM05D004741 ORTHO05D005454 6.6e-126 454.9 320 67.2
Gohir.A11G330400 Gossypium hirsutum HOM05D004741 ORTHO05D005454 5.6e-125 451.8 407 56.5
BcaC01g01061 Brassica carinata HOM05D004741 ORTHO05D005454 9.6e-117 424.5 358 60.3
Gohir.A05G415901 Gossypium hirsutum HOM05D004741 ORTHO05D005454 8.4e-113 411.4 247 74.5
Gohir.A07G233600 Gossypium hirsutum HOM05D004741 ORTHO05D005454 6.0e-111 405.2 397 52.9
Dinv44899 Davidia involucrata HOM05D004741 ORTHO05D005454 1.3e-110 404.1 274 73.0
MD08G1051300 Malus domestica HOM05D004741 ORTHO05D005454 3.3e-109 399.4 268 72.4
Cre02.g146950 Chlamydomonas reinhardtii HOM05D004741 ORTHO05D005454 7.4e-109 398.3 437 47.1
RcHm_v2.0_Chr1g0357361 Rosa chinensis HOM05D004741 ORTHO05D005454 4.2e-104 382.5 267 69.7
MCO02G476 Micromonas commoda HOM05D004741 ORTHO05D005454 7.9e-103 378.3 283 59.7
SGA_v2.0_scaffold24G10244 Striga asiatica HOM05D004741 ORTHO05D005454 7.4e-101 371.7 200 85.0
Nitab4.5_0000159g0030 Nicotiana tabacum HOM05D004741 ORTHO05D005454 3.7e-100 369.4 199 85.4
Gohir.A12G001100 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.5e-98 364.0 272 64.0
Gohir.A12G000500 Gossypium hirsutum HOM05D004741 ORTHO05D005454 5.5e-96 355.5 349 55.3
PRCOL_00004462 Prasinoderma coloniale HOM05D004741 ORTHO05D005454 2.7e-95 353.2 409 44.7
Gohir.A03G000005 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.7e-84 316.2 202 72.8
Gohir.A02G000050 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.2e-82 311.2 202 70.8
Gohir.A09G249600 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.2e-81 307.0 200 71.0
Cfa025655 Carpinus fangiana HOM05D004741 ORTHO05D005454 1.4e-75 287.7 404 41.1
Haze_27111 Corylus avellana HOM05D004741 ORTHO05D005454 4.1e-75 286.2 296 44.9
BcaB02g11404 Brassica carinata HOM05D004741 ORTHO05D005454 1.7e-73 280.8 167 74.3
PSO210G0837 Papaver somniferum HOM05D004741 ORTHO05D005454 3.6e-71 273.1 165 76.4
Gohir.1Z049489 Gossypium hirsutum HOM05D004741 ORTHO05D005454 7.5e-61 238.8 194 61.3
Gohir.1Z049306 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.6e-58 231.1 144 72.9
Gohir.1Z049408 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.6e-58 231.1 144 72.9
Gohir.1Z049565 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.6e-58 231.1 144 72.9
Gohir.1Z049424 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.7e-57 227.6 144 72.2
AagrBONN_evm.TU.Sc2ySwM_369.559 Anthoceros agrestis HOM05D004741 ORTHO05D005454 9.5e-56 221.9 210 52.9
Gohir.A07G000083 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.8e-55 220.3 154 67.5
Gohir.A04G148266 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.0e-49 201.8 185 54.1
MD13G1228500 Malus domestica HOM05D004741 ORTHO05D005454 9.5e-48 195.3 119 74.8
Gohir.A12G001050 Gossypium hirsutum HOM05D004741 ORTHO05D005454 4.7e-39 166.4 96 74.0
Sopen07g006070 Solanum pennellii HOM05D004741 ORTHO05D005454 6.2e-39 166.0 86 87.2
ATR0582G232 Amborella trichopoda HOM05D004741 ORTHO05D005454 4.4e-37 159.8 99 72.7
Lsat_1_v5_gn_9_90121 Lactuca sativa HOM05D000676 ORTHO05D001458 1.7e-36 157.9 108 67.6
Os03g0725300 Oryza sativa ssp. japonica HOM05D004741 ORTHO05D005454 8.9e-30 135.6 84 71.4
CSS0024103 Camellia sinensis var. sinensis HOM05D004741 ORTHO05D005454 8.6e-25 119.0 63 98.4
Gohir.D12G000832 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.3e-24 117.1 79 67.1
Gohir.A13G000900 Gossypium hirsutum HOM05D004741 ORTHO05D005454 9.5e-24 115.5 62 79.0
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 1.2e-15 88.6 84 51.2
SalBow7G3287 Salvia bowleyana HOM05D004741 ORTHO05D005454 3.6e-15 87.0 43 88.4
CAN.G1057.23 Capsicum annuum HOM05D004741 ORTHO05D005454 4.0e-14 83.6 107 43.0
PSO541G5767 Papaver somniferum HOM05D001230 ORTHO05D001067 4.0e-14 83.6 47 80.9
Gohir.A08G000024 Gossypium hirsutum HOM05D004741 ORTHO05D005454 6.4e-12 76.3 108 44.4
Dinv44900 Davidia involucrata HOM05D004741 ORTHO05D005454 5.4e-11 73.2 78 60.3
Gohir.A13G000601 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.5e-10 70.5 57 56.1
arahy.Tifrunner.gnm1.ann1.RXWW1P Arachis hypogaea HOM05D001147 ORTHO05D000823 1.7e-09 68.2 63 50.8
Actinidia10255 Actinidia chinensis HOM05D004741 ORTHO05D005454 2.5e-08 64.3 36 83.3
Pp3c16_14300 Physcomitrium patens HOM05D005251 ORTHO05D006680 3.3e-08 63.9 236 27.1
Gohir.D03G178375 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.8e-06 58.2 72 43.1


User provided reference genes

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