Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005257 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 0.0e+00 1126.7 581 100.0
CSS0005508 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 0.0e+00 1126.7 581 100.0
Dinv27935 Davidia involucrata HOM05D004433 ORTHO05D005251 1.1e-256 889.8 577 81.6
Actinidia14688 Actinidia chinensis HOM05D004433 ORTHO05D005251 8.0e-255 883.6 611 79.4
TAR639G0002 Trochodendron aralioides HOM05D004433 ORTHO05D005251 1.8e-246 855.9 568 78.9
Ciclev10007803m.g Citrus clementina HOM05D004433 ORTHO05D005251 3.5e-242 841.6 598 75.4
Atru.chr7.2050 Acer truncatum HOM05D004433 ORTHO05D005251 4.6e-242 841.3 532 81.2
vmacro00182 Vaccinium macrocarpon HOM05D004433 ORTHO05D005251 1.3e-241 839.7 598 76.1
Cfa013388 Carpinus fangiana HOM05D004433 ORTHO05D005251 8.6e-241 837.0 599 75.3
GSVIVG01035316001 Vitis vinifera HOM05D004433 ORTHO05D005251 7.3e-240 833.9 546 77.8
Eucgr.C00613 Eucalyptus grandis HOM05D004433 ORTHO05D005251 9.5e-240 833.6 569 76.6
QL12p040912 Quercus lobata HOM05D004433 ORTHO05D005251 1.2e-239 833.2 592 75.5
Duzib150G0295 Durio zibethinus HOM05D004433 ORTHO05D005251 8.9e-238 827.0 603 73.5
Oeu019243.1 Olea europaea HOM05D004433 ORTHO05D005251 8.9e-238 827.0 509 81.3
MSTRG.25921 Avicennia marina HOM05D004433 ORTHO05D005251 2.6e-237 825.5 591 72.9
CiPaw.08G027400 Carya illinoinensis HOM05D004433 ORTHO05D005251 7.6e-237 823.9 595 73.9
TWI34G1917 Tripterygium wilfordii HOM05D004433 ORTHO05D005251 9.9e-237 823.5 602 72.6
PGR031G3150 Punica granatum HOM05D004433 ORTHO05D005251 2.2e-236 822.4 566 75.1
Nn8g39044 Nelumbo nucifera HOM05D004433 ORTHO05D005251 2.9e-236 822.0 589 75.4
Aqoxy5G01364 Aquilegia oxysepala HOM05D004433 ORTHO05D005251 6.4e-236 820.8 537 76.9
FvH4_2g35220 Fragaria vesca HOM05D004433 ORTHO05D005251 8.4e-236 820.5 596 73.0
RcHm_v2.0_Chr6g0306711 Rosa chinensis HOM05D004433 ORTHO05D005251 5.4e-235 817.8 591 72.4
Potri.018G057500 Populus trichocarpa HOM05D004433 ORTHO05D005251 2.1e-234 815.8 598 73.1
Duzib168G1809 Durio zibethinus HOM05D004433 ORTHO05D005251 2.7e-234 815.5 538 78.1
Migut.A00179 Erythranthe guttata HOM05D004433 ORTHO05D005251 4.6e-234 814.7 598 71.9
Ca_03360_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 7.8e-234 813.9 499 83.4
Nitab4.5_0008242g0010 Nicotiana tabacum HOM05D004433 ORTHO05D005251 5.1e-233 811.2 575 74.6
Glyma.14G144100 Glycine max HOM05D004433 ORTHO05D005251 1.9e-232 809.3 587 74.1
arahy.Tifrunner.gnm1.ann1.AK26AV Arachis hypogaea HOM05D004433 ORTHO05D005251 2.5e-232 808.9 605 72.2
FAN15G1676 Fragaria x ananassa HOM05D004433 ORTHO05D005251 4.3e-232 808.1 570 73.5
Thecc.09G048300 Theobroma cacao HOM05D004433 ORTHO05D005251 5.6e-232 807.7 599 73.5
Sed0005675 Sechium edule HOM05D004433 ORTHO05D005251 1.6e-231 806.2 511 79.6
ClCG11G015050 Citrullus lanatus HOM05D004433 ORTHO05D005251 2.1e-231 805.8 511 80.4
Gohir.D06G090400 Gossypium hirsutum HOM05D004433 ORTHO05D005251 8.1e-231 803.9 538 76.8
Medtr1g007320 Medicago truncatula HOM05D004433 ORTHO05D005251 5.2e-230 801.2 502 80.7
Gohir.A06G091200 Gossypium hirsutum HOM05D004433 ORTHO05D005251 6.9e-230 800.8 601 71.9
Phvul.001G078300 Phaseolus vulgaris HOM05D004433 ORTHO05D005251 6.9e-230 800.8 594 73.6
Lj1g0025930 Lotus japonicus HOM05D004433 ORTHO05D005251 2.0e-229 799.3 503 81.5
MELO3C003474.2 Cucumis melo HOM05D004433 ORTHO05D005251 2.6e-229 798.9 507 80.1
HanXRQChr02g0047921 Helianthus annuus HOM05D004433 ORTHO05D005251 5.8e-229 797.7 555 74.6
Gorai.010G104100 Gossypium raimondii HOM05D004433 ORTHO05D005251 2.9e-228 795.4 564 73.6
CsaV3_3G048450 Cucumis sativus L. HOM05D004433 ORTHO05D005251 6.4e-228 794.3 507 79.3
Rhsim11G0049500 Rhododendron simsii HOM05D004433 ORTHO05D005251 1.1e-227 793.5 648 69.1
Sopen08g019860 Solanum pennellii HOM05D004433 ORTHO05D005251 1.1e-227 793.5 595 72.4
Lsat_1_v5_gn_6_7781 Lactuca sativa HOM05D004433 ORTHO05D005251 3.2e-227 792.0 596 71.1
PSO210G3373 Papaver somniferum HOM05D004433 ORTHO05D005251 3.2e-227 792.0 579 71.5
ATR0705G146 Amborella trichopoda HOM05D004433 ORTHO05D005251 5.4e-227 791.2 590 71.4
MD08G1110200 Malus domestica HOM05D004433 ORTHO05D005251 9.3e-227 790.4 535 75.3
CAN.G1444.6 Capsicum annuum HOM05D004433 ORTHO05D005251 1.2e-226 790.0 603 71.8
Psat6g036080 Pisum sativum HOM05D004433 ORTHO05D005251 1.6e-226 789.6 588 71.9
Lalb_Chr22g0360911 Lupinus albus HOM05D004433 ORTHO05D005251 2.1e-226 789.3 599 72.0
Sc23g0005440 Simmondsia chinensis HOM05D004433 ORTHO05D005251 2.7e-226 788.9 571 72.2
Solyc08g066180.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 4.6e-226 788.1 595 72.3
VMungo1383G1648 Vigna mungo HOM05D004433 ORTHO05D005251 1.0e-225 786.9 588 72.1
Nitab4.5_0000318g0140 Nicotiana tabacum HOM05D004433 ORTHO05D005251 6.6e-225 784.3 584 71.9
Lj7C697T10 Lonicera japonica HOM05D004433 ORTHO05D005251 2.5e-224 782.3 568 71.3
THA.LOC104818595 Tarenaya hassleriana HOM05D004433 ORTHO05D005251 1.3e-223 780.0 590 69.8
ECA233G5497 Erigeron canadensis HOM05D004433 ORTHO05D005251 1.6e-223 779.6 510 77.8
Prupe.1G444400 Prunus persica HOM05D004433 ORTHO05D005251 1.6e-223 779.6 604 69.7
CANSAT21G1878 Cannabis sativa HOM05D004433 ORTHO05D005251 4.8e-223 778.1 594 70.5
TPR.G24519 Trifolium pratense HOM05D004433 ORTHO05D005251 1.4e-222 776.5 504 78.8
Ah.10g034740 Amaranthus hybridus HOM05D004433 ORTHO05D005251 2.4e-222 775.8 502 76.5
Thhalv10001936m.g Eutrema salsugineum HOM05D004433 ORTHO05D005251 4.0e-222 775.0 534 74.3
CANSAT21G2561 Cannabis sativa HOM05D004433 ORTHO05D005251 1.3e-220 770.0 547 74.8
Sp4g05710 Schrenkiella parvula HOM05D004433 ORTHO05D005251 1.3e-220 770.0 543 72.7
AUR62040221 Chenopodium quinoa HOM05D004433 ORTHO05D005251 1.7e-220 769.6 503 76.3
DCAR_003083 Daucus carota HOM05D004433 ORTHO05D005251 8.4e-220 767.3 578 71.6
BcaB06g29637 Brassica carinata HOM05D004433 ORTHO05D005251 1.1e-219 766.9 556 70.3
BolC4t27102H Brassica oleracea HOM05D004433 ORTHO05D005251 1.1e-219 766.9 556 70.3
BraA04t17590Z Brassica rapa HOM05D004433 ORTHO05D005251 1.1e-219 766.9 557 70.6
A04p20080 Brassica napus HOM05D004433 ORTHO05D005251 1.4e-219 766.5 557 70.6
SGA_v2.0_scaffold103G30047 Striga asiatica HOM05D004433 ORTHO05D005251 1.9e-219 766.1 666 63.7
BcaB06g29638 Brassica carinata HOM05D004433 ORTHO05D005251 3.2e-219 765.4 542 72.1
AUR62009222 Chenopodium quinoa HOM05D004433 ORTHO05D005251 3.2e-219 765.4 503 75.7
C04p55760 Brassica napus HOM05D004433 ORTHO05D005251 5.4e-219 764.6 556 70.1
FAN20G2992 Fragaria x ananassa HOM05D004433 ORTHO05D005251 7.1e-219 764.2 604 68.9
CARHR115360 Cardamine hirsuta HOM05D004433 ORTHO05D005251 9.3e-219 763.8 557 71.1
Carub.0004s0569 Capsella rubella HOM05D004433 ORTHO05D005251 1.6e-218 763.1 538 72.5
Aa31LG5G9810 Aethionema arabicum HOM05D004433 ORTHO05D005251 2.7e-218 762.3 560 70.7
AL4G17700 Arabidopsis lyrata HOM05D004433 ORTHO05D005251 2.7e-218 762.3 557 70.4
AT2G25870 Arabidopsis thaliana HOM05D004433 ORTHO05D005251 3.5e-218 761.9 507 75.3
arahy.Tifrunner.gnm1.ann1.YGB7WG Arachis hypogaea HOM05D004433 ORTHO05D005251 3.0e-217 758.8 604 69.0
CDE09G0966 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 1.5e-216 756.5 596 66.9
Actinidia18212 Actinidia chinensis HOM05D004433 ORTHO05D005251 6.2e-215 751.1 460 83.9
FAN27G1484 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.7e-212 743.0 634 65.3
MBI04_g07004_MAGBIO Magnolia biondii HOM05D004433 ORTHO05D005251 1.4e-211 740.0 570 68.2
Peaxi162Scf00699g00520 Petunia axillaris HOM05D004433 ORTHO05D005251 2.1e-210 736.1 597 67.8
COL.COLO4_21003 Corchorus olitorius HOM05D004433 ORTHO05D005251 3.0e-209 732.3 544 72.1
SalBow4G2164 Salvia bowleyana HOM05D004433 ORTHO05D005251 8.2e-207 724.2 595 66.4
Manes.03G060700 Manihot esculenta HOM05D004433 ORTHO05D005251 1.0e-201 707.2 483 76.2
EL10Ac2g03971 Beta vulgaris HOM05D004433 ORTHO05D005251 9.7e-200 700.7 503 72.2
Manes.16G073200 Manihot esculenta HOM05D004433 ORTHO05D005251 3.1e-198 695.7 599 65.8
FvH4_2g35230 Fragaria vesca HOM05D004433 ORTHO05D005251 1.2e-197 693.7 528 68.2
Prupe.1G444500 Prunus persica HOM05D004433 ORTHO05D005251 6.5e-196 688.0 584 64.4
Sabra18G0052000 Salix brachista HOM05D004433 ORTHO05D005251 2.7e-194 682.6 637 61.7
Hund03376 Selenicereus undatus HOM05D004433 ORTHO05D005251 6.7e-193 677.9 459 73.6
Dinv23396 Davidia involucrata HOM05D004433 ORTHO05D005251 5.7e-192 674.9 387 88.1
PSO210G0672 Papaver somniferum HOM05D004433 ORTHO05D005251 1.7e-191 673.3 538 66.4
FAN27G0398 Fragaria x ananassa HOM05D004433 ORTHO05D005251 5.3e-190 668.3 553 63.8
RcHm_v2.0_Chr6g0306701 Rosa chinensis HOM05D004433 ORTHO05D005251 1.1e-184 650.6 478 70.1
Zm00001eb153790 Zea mays HOM05D004433 ORTHO05D005251 1.5e-184 650.2 524 62.8
Glyma.17G192300 Glycine max HOM05D004433 ORTHO05D005251 1.5e-176 623.6 473 72.1
ATR1159G027 Amborella trichopoda HOM05D004433 ORTHO05D005251 8.2e-175 617.8 559 61.2
MD08G1110300 Malus domestica HOM05D004433 ORTHO05D005251 1.5e-168 597.0 435 70.6
FAN15G3540 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.8e-166 590.1 523 62.0
Os01g0739400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 1.8e-158 563.5 540 55.0
Lj8A567T31 Lonicera japonica HOM05D004433 ORTHO05D005251 5.9e-149 531.9 345 78.3
Os02g0227000 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 2.7e-141 506.5 441 57.6
unitig_32.g11476 Utricularia gibba HOM05D004433 ORTHO05D005251 3.3e-139 499.6 578 51.0
Pp3c15_25010 Physcomitrium patens HOM05D004433 ORTHO05D005251 1.6e-138 497.3 543 51.7
Oeu008300.1 Olea europaea HOM05D004433 ORTHO05D005251 1.1e-134 484.6 505 55.4
Zm00001eb239610 Zea mays HOM05D004433 ORTHO05D005251 3.3e-131 473.0 452 54.0
Mapoly0124s0034 Marchantia polymorpha HOM05D004433 ORTHO05D005251 7.3e-131 471.9 519 50.1
Cc08_g09950 Coffea canephora HOM05D004433 ORTHO05D005251 1.6e-130 470.7 351 70.9
HPP92_005557 Vanilla planifolia HOM05D004433 ORTHO05D005251 1.8e-129 467.2 468 55.1
Ciclev10010169m.g Citrus clementina HOM05D004433 ORTHO05D005251 1.1e-126 458.0 455 58.7
Haze_21925 Corylus avellana HOM05D004433 ORTHO05D005251 3.3e-123 446.4 403 64.5
Ca_19223_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 2.8e-114 416.8 266 80.8
CBR_g31496 Chara braunii HOM05D004433 ORTHO05D005251 5.4e-110 402.5 487 46.2
Os09g0388400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 1.6e-90 337.8 332 53.0
Cc08_g09960 Coffea canephora HOM05D004433 ORTHO05D005251 6.9e-89 332.4 204 78.4
HPP92_003623 Vanilla planifolia HOM05D004433 ORTHO05D005251 1.8e-76 291.2 227 66.5
SEGI_35823 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 2.3e-76 290.8 202 68.8
Cpa.g.sc7.220 Carica papaya HOM05D004433 ORTHO05D005251 3.3e-75 287.0 173 80.9
SMO352G0038 Selaginella moellendorffii HOM05D004433 ORTHO05D005251 5.5e-70 269.6 261 53.6
Cpa.g.sc7.222 Carica papaya HOM05D004433 ORTHO05D005251 1.6e-69 268.1 190 75.3
SEGI_12418 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 1.7e-66 258.1 277 52.7
PRCOL_00001006 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 8.2e-66 255.8 390 40.5
Potri.006G235301 Populus trichocarpa HOM05D004433 ORTHO05D005251 1.8e-65 254.6 178 72.5
FAN20G0434 Fragaria x ananassa HOM05D004433 ORTHO05D005251 3.7e-58 230.3 234 55.1
CDE02G1264 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 1.8e-57 228.0 132 81.8
MCO02G391 Micromonas commoda HOM05D004433 ORTHO05D005251 2.4e-57 227.6 288 44.8
Hma1.2p1_0049F.1_g028280 Hydrangea macrophylla HOM05D004433 ORTHO05D005251 2.2e-47 194.5 113 83.2
Ca_12764_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 2.9e-47 194.1 177 62.1
Hund19490 Selenicereus undatus HOM05D004433 ORTHO05D005251 1.6e-45 188.3 128 71.1
Cre06.g252150 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 8.3e-42 176.0 271 40.6
Hund19491 Selenicereus undatus HOM05D004433 ORTHO05D005251 1.2e-35 155.6 150 54.0
Oeu059683.2 Olea europaea HOM05D004433 ORTHO05D005251 4.4e-35 153.7 106 68.9
Gohir.A08G152250 Gossypium hirsutum HOM05D004433 ORTHO05D005251 9.8e-35 152.5 122 64.8
MCO10G003 Micromonas commoda HOM05D004433 ORTHO05D005251 3.9e-31 140.6 266 36.5
CDE02G2445 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 1.4e-28 132.1 95 71.6
Cre09.g402997 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 7.5e-27 126.3 203 39.4
TAR383G0959 Trochodendron aralioides HOM05D004433 ORTHO05D005251 2.9e-26 124.4 232 40.9
VMungo1215G2735 Vigna mungo HOM05D004433 ORTHO05D005251 8.3e-26 122.9 83 69.9
PRCOL_00006247 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 4.1e-25 120.6 268 34.3
Solyc06g011570.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 2.0e-24 118.2 112 52.7
Sopen06g006790 Solanum pennellii HOM05D004433 ORTHO05D005251 4.7e-21 107.1 77 68.8
Lj8A567T30 Lonicera japonica HOM05D004433 ORTHO05D005251 6.4e-18 96.7 56 85.7
RcHm_v2.0_Chr6g0271151 Rosa chinensis HOM05D004433 ORTHO05D005251 8.3e-18 96.3 71 67.6
Os09g0393801 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 7.1e-17 93.2 91 50.5
RcHm_v2.0_Chr6g0310261 Rosa chinensis HOM05D004433 ORTHO05D005251 1.2e-16 92.4 71 64.8
SGA_v2.0_scaffold266G46140 Striga asiatica HOM05D004433 ORTHO05D005251 2.1e-16 91.7 57 82.5
Os09g0393501 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 1.7e-15 88.6 91 48.4
Ca_28629_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 1.9e-14 85.1 249 28.1
HPP92_005558 Vanilla planifolia HOM05D004433 ORTHO05D005251 2.5e-14 84.7 52 78.8
AT5G38747 Arabidopsis thaliana HOM05D004433 ORTHO05D081644 8.3e-10 69.7 59 59.3
TAR625G0121 Trochodendron aralioides HOM05D004433 ORTHO05D005251 7.1e-09 66.6 40 85.0
Pp3s32_540 Physcomitrium patens HOM05D004878 ORTHO05D021266 1.6e-08 65.5 291 24.1
Ca_29420_v3 Cicer arietinum L. HOM05D003834 ORTHO05D044391 3.5e-08 64.3 109 36.7
MD15G1112400 Malus domestica HOM05D004433 ORTHO05D005251 7.8e-08 63.2 36 83.3
CDE02G0724 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 5.6e-06 57.0 110 42.7
Medtr1g007290 Medicago truncatula HOM05D004433 ORTHO05D005251 7.3e-06 56.6 52 53.8


User provided reference genes

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