Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005493 Camellia sinensis var. sinensis HOM05D000824 ORTHO05D003555 1.1e-99 366.7 189 100.0
Actinidia04822 Actinidia chinensis HOM05D000824 ORTHO05D003555 6.7e-17 91.7 49 87.8
CSS0009813 Camellia sinensis var. sinensis HOM05D000824 ORTHO05D003555 1.9e-16 90.1 49 89.8
CSS0043196 Camellia sinensis var. sinensis HOM05D000824 ORTHO05D003555 1.9e-16 90.1 49 89.8
Dinv22775 Davidia involucrata HOM05D000824 ORTHO05D003555 1.9e-16 90.1 49 85.7
Actinidia16130 Actinidia chinensis HOM05D000824 ORTHO05D003555 4.3e-16 89.0 49 89.8
Dinv17419 Davidia involucrata HOM05D000824 ORTHO05D003555 1.3e-15 87.4 49 85.7
arahy.Tifrunner.gnm1.ann1.J8WCL7 Arachis hypogaea HOM05D000824 ORTHO05D003555 2.8e-15 86.3 49 83.7
CiPaw.11G054100 Carya illinoinensis HOM05D000824 ORTHO05D003555 2.8e-15 86.3 49 81.6
vmacro17614 Vaccinium macrocarpon HOM05D000824 ORTHO05D003555 3.7e-15 85.9 49 83.7
Lj5A102T96 Lonicera japonica HOM05D000824 ORTHO05D003555 4.8e-15 85.5 49 83.7
Hma1.2p1_0060F.1_g033050 Hydrangea macrophylla HOM05D000824 ORTHO05D003555 6.2e-15 85.1 49 79.6
arahy.Tifrunner.gnm1.ann1.E3U0AR Arachis hypogaea HOM05D000824 ORTHO05D003555 8.2e-15 84.7 49 81.6
HanXRQChr16g0517661 Helianthus annuus HOM05D000824 ORTHO05D003555 8.2e-15 84.7 49 79.6
Rhsim08G0145600 Rhododendron simsii HOM05D000824 ORTHO05D003555 8.2e-15 84.7 49 81.6
Lj9C471T8 Lonicera japonica HOM05D000824 ORTHO05D003555 1.1e-14 84.3 49 83.7
Sabra15G0082600 Salix brachista HOM05D000824 ORTHO05D003555 1.1e-14 84.3 49 79.6
CAN.G1228.20 Capsicum annuum HOM05D000824 ORTHO05D003555 1.4e-14 84.0 49 79.6
Cc00_g07660 Coffea canephora HOM05D000824 ORTHO05D003555 1.4e-14 84.0 49 81.6
HanXRQChr02g0044771 Helianthus annuus HOM05D000824 ORTHO05D003555 1.4e-14 84.0 49 79.6
Nitab4.5_0001485g0110 Nicotiana tabacum HOM05D000824 ORTHO05D003555 1.4e-14 84.0 49 79.6
Solyc03g115050.3 Solanum lycopersicum HOM05D000824 ORTHO05D003555 1.4e-14 84.0 49 79.6
Sopen03g034120 Solanum pennellii HOM05D000824 ORTHO05D003555 1.4e-14 84.0 49 79.6
PGSC0003DMG400024634 Solanum tuberosum HOM05D000824 ORTHO05D003555 1.4e-14 84.0 49 79.6
DCAR_011568 Daucus carota HOM05D000824 ORTHO05D003555 1.8e-14 83.6 49 81.6
DCAR_011569 Daucus carota HOM05D000824 ORTHO05D003555 1.8e-14 83.6 49 81.6
DCAR_023168 Daucus carota HOM05D000824 ORTHO05D003555 1.8e-14 83.6 49 81.6
MD06G1225500 Malus domestica HOM05D000824 ORTHO05D003555 1.8e-14 83.6 49 81.6
Nn4g23436 Nelumbo nucifera HOM05D000824 ORTHO05D003555 1.8e-14 83.6 49 79.6
SGA_v2.0_scaffold25G10955 Striga asiatica HOM05D000824 ORTHO05D003555 1.8e-14 83.6 49 77.6
Potri.015G057300 Populus trichocarpa HOM05D000824 ORTHO05D003555 2.4e-14 83.2 49 79.6
QL10p019699 Quercus lobata HOM05D000824 ORTHO05D003555 2.4e-14 83.2 49 81.6
Sed0027547 Sechium edule HOM05D000824 ORTHO05D003555 2.4e-14 83.2 49 81.6
SGA_v2.0_scaffold28G11745 Striga asiatica HOM05D000824 ORTHO05D003555 2.4e-14 83.2 49 77.6
MSTRG.11337 Avicennia marina HOM05D000824 ORTHO05D003555 3.1e-14 82.8 49 75.5
Manes.06G084200 Manihot esculenta HOM05D000824 ORTHO05D003555 3.1e-14 82.8 49 79.6
Migut.I00367 Erythranthe guttata HOM05D000824 ORTHO05D003555 5.3e-14 82.0 49 77.6
MD14G1212400 Malus domestica HOM05D000824 ORTHO05D003555 5.3e-14 82.0 49 77.6
MSTRG.22957 Avicennia marina HOM05D000824 ORTHO05D003555 6.9e-14 81.6 49 77.6
Haze_07734 Corylus avellana HOM05D000824 ORTHO05D003555 6.9e-14 81.6 49 77.6
ECA247G3309 Erigeron canadensis HOM05D000824 ORTHO05D003555 6.9e-14 81.6 49 77.6
Lalb_Chr12g0197221 Lupinus albus HOM05D000824 ORTHO05D003555 6.9e-14 81.6 49 77.6
Nitab4.5_0009401g0060 Nicotiana tabacum HOM05D000824 ORTHO05D003555 6.9e-14 81.6 49 77.6
TWI81G1098 Tripterygium wilfordii HOM05D000824 ORTHO05D003555 6.9e-14 81.6 49 77.6
Lj4g0021262 Lotus japonicus HOM05D000824 ORTHO05D003555 9.0e-14 81.3 49 79.6
Hund02583 Selenicereus undatus HOM05D000824 ORTHO05D003555 9.0e-14 81.3 49 77.6
CANSAT80G1236 Cannabis sativa HOM05D000824 ORTHO05D003555 1.2e-13 80.9 49 77.6
Prupe.5G205700 Prunus persica HOM05D000824 ORTHO05D003555 1.2e-13 80.9 49 77.6
Atru.chr9.564 Acer truncatum HOM05D000824 ORTHO05D003555 1.5e-13 80.5 49 73.5
Cpa.g.sc1086.1 Carica papaya HOM05D000824 ORTHO05D003555 1.5e-13 80.5 49 75.5
Cfa019342 Carpinus fangiana HOM05D000824 ORTHO05D003555 1.5e-13 80.5 49 75.5
ClCG06G015600 Citrullus lanatus HOM05D000824 ORTHO05D003555 1.5e-13 80.5 49 75.5
Medtr4g109580 Medicago truncatula HOM05D000824 ORTHO05D003555 2.0e-13 80.1 49 75.5
Peaxi162Scf00201g00330 Petunia axillaris HOM05D000824 ORTHO05D003555 2.6e-13 79.7 49 75.5
TAR371G0671 Trochodendron aralioides HOM05D000824 ORTHO05D003555 2.6e-13 79.7 49 75.5
CsaV3_1G002970 Cucumis sativus L. HOM05D000824 ORTHO05D003555 3.4e-13 79.3 49 75.5
Sc04g0004360 Simmondsia chinensis HOM05D000824 ORTHO05D003555 3.4e-13 79.3 49 75.5
AUR62008537 Chenopodium quinoa HOM05D000824 ORTHO05D003555 4.5e-13 79.0 49 77.6
AUR62021554 Chenopodium quinoa HOM05D000824 ORTHO05D003555 4.5e-13 79.0 49 77.6
Eucgr.B00599 Eucalyptus grandis HOM05D000824 ORTHO05D003555 4.5e-13 79.0 49 75.5
Lsat_1_v5_gn_1_14461 Lactuca sativa HOM05D000824 ORTHO05D003555 4.5e-13 79.0 49 75.5
Os03g0214100 Oryza sativa ssp. japonica HOM05D000824 ORTHO05D003555 4.5e-13 79.0 50 72.0
HPP92_014050 Vanilla planifolia HOM05D000824 ORTHO05D003555 4.5e-13 79.0 51 68.6
BcaB01g05642 Brassica carinata HOM05D000824 ORTHO05D003555 5.8e-13 78.6 49 75.5
A03p03540 Brassica napus HOM05D000824 ORTHO05D003555 5.8e-13 78.6 49 75.5
BolC3t12936H Brassica oleracea HOM05D000824 ORTHO05D003555 5.8e-13 78.6 49 75.5
BraA03t09704Z Brassica rapa HOM05D000824 ORTHO05D003555 5.8e-13 78.6 49 75.5
VMungo1215G1142 Vigna mungo HOM05D000824 ORTHO05D003555 5.8e-13 78.6 49 77.6
GSVIVG01007849001 Vitis vinifera HOM05D000824 ORTHO05D003555 5.8e-13 78.6 49 73.5
BcaB01g05683 Brassica carinata HOM05D000824 ORTHO05D003555 7.6e-13 78.2 49 75.5
Ciclev10019317m.g Citrus clementina HOM05D000824 ORTHO05D003555 7.6e-13 78.2 49 73.5
Eucgr.B00601 Eucalyptus grandis HOM05D000824 ORTHO05D003555 7.6e-13 78.2 49 75.5
PSO017G4603 Papaver somniferum HOM05D000824 ORTHO05D003555 7.6e-13 78.2 49 75.5
PSO478G2603 Papaver somniferum HOM05D000824 ORTHO05D003555 7.6e-13 78.2 49 75.5
Zm00001eb400180 Zea mays HOM05D000824 ORTHO05D003555 7.6e-13 78.2 49 69.4
Ca_21770_v3 Cicer arietinum L. HOM05D000824 ORTHO05D003555 1.3e-12 77.4 49 73.5
GSVIVG01026037001 Vitis vinifera HOM05D004942 ORTHO05D005687 1.3e-12 77.4 49 73.5
GSVIVG01026043001 Vitis vinifera HOM05D004942 ORTHO05D005687 1.3e-12 77.4 49 73.5
Ah.02g114080 Amaranthus hybridus HOM05D000824 ORTHO05D003555 1.7e-12 77.0 49 77.6
Aqoxy3G03684 Aquilegia oxysepala HOM05D000824 ORTHO05D003555 1.7e-12 77.0 49 75.5
Hund09917 Selenicereus undatus HOM05D000824 ORTHO05D003555 1.7e-12 77.0 49 75.5
Thhalv10013014m.g Eutrema salsugineum HOM05D000824 ORTHO05D003555 2.2e-12 76.6 49 73.5
MBI05_g12632_MAGBIO Magnolia biondii HOM05D002823 ORTHO05D003025 2.2e-12 76.6 49 75.5
Phvul.003G184400 Phaseolus vulgaris HOM05D000824 ORTHO05D003555 2.2e-12 76.6 49 75.5
Psat4g047800 Pisum sativum HOM05D000824 ORTHO05D003555 2.2e-12 76.6 49 71.4
ATR0177G023 Amborella trichopoda HOM05D000824 ORTHO05D003555 2.9e-12 76.3 49 75.5
SEGI_23554 Sequoiadendron giganteum HOM05D000824 ORTHO05D003555 2.9e-12 76.3 70 62.9
unitig_62.g23555 Utricularia gibba HOM05D000824 ORTHO05D003555 2.9e-12 76.3 101 49.5
EL10Ac5g11138 Beta vulgaris HOM05D000824 ORTHO05D003555 3.8e-12 75.9 49 75.5
Oeu044875.1 Olea europaea HOM05D000824 ORTHO05D003555 3.8e-12 75.9 49 71.4
PGR083G2843 Punica granatum HOM05D000824 ORTHO05D003555 3.8e-12 75.9 49 69.4
RcHm_v2.0_Chr7g0183161 Rosa chinensis HOM05D000824 ORTHO05D003555 3.8e-12 75.9 49 75.5
THA.LOC104819400 Tarenaya hassleriana HOM05D000824 ORTHO05D003555 3.8e-12 75.9 49 73.5
AT5G08020 Arabidopsis thaliana HOM05D000824 ORTHO05D003555 4.9e-12 75.5 49 71.4
C03p03990 Brassica napus HOM05D000824 ORTHO05D003555 4.9e-12 75.5 49 73.5
Carub.0006s0691 Capsella rubella HOM05D000824 ORTHO05D003555 4.9e-12 75.5 49 71.4
Glyma.05G020600 Glycine max HOM05D000824 ORTHO05D003555 4.9e-12 75.5 49 73.5
Sed0022878 Sechium edule HOM05D000824 ORTHO05D003555 4.9e-12 75.5 49 73.5
BcaB08g37297 Brassica carinata HOM05D000824 ORTHO05D003555 6.5e-12 75.1 49 71.4
Zm00001eb008630 Zea mays HOM05D000824 ORTHO05D003555 6.5e-12 75.1 49 67.3
Ah.11g047720 Amaranthus hybridus HOM05D000824 ORTHO05D003555 8.4e-12 74.7 49 73.5
FvH4_5g13771 Fragaria vesca HOM05D000824 ORTHO05D003555 8.4e-12 74.7 49 73.5
FAN13G2002 Fragaria x ananassa HOM05D000824 ORTHO05D003555 8.4e-12 74.7 49 73.5
FAN18G4284 Fragaria x ananassa HOM05D000824 ORTHO05D003555 8.4e-12 74.7 49 73.5
Lalb_Chr13g0302831 Lupinus albus HOM05D000824 ORTHO05D003555 8.4e-12 74.7 49 69.4
Sp6g34920 Schrenkiella parvula HOM05D000824 ORTHO05D003555 8.4e-12 74.7 49 71.4
Glyma.17G078700 Glycine max HOM05D000824 ORTHO05D003555 1.1e-11 74.3 49 71.4
THA.LOC104804633 Tarenaya hassleriana HOM05D000824 ORTHO05D003555 1.1e-11 74.3 49 69.4
CARHR205160 Cardamine hirsuta HOM05D000824 ORTHO05D003555 1.4e-11 73.9 49 69.4
AagrBONN_evm.TU.Sc2ySwM_228.2389 Anthoceros agrestis HOM05D000824 ORTHO05D003555 2.5e-11 73.2 50 68.0
Gohir.A03G070300 Gossypium hirsutum HOM05D000824 ORTHO05D003555 2.5e-11 73.2 49 65.3
AL6G18370 Arabidopsis lyrata HOM05D000824 ORTHO05D003555 4.2e-11 72.4 49 69.4
C07p44760 Brassica napus HOM05D000824 ORTHO05D003555 4.2e-11 72.4 49 65.3
Gorai.003G101500 Gossypium raimondii HOM05D000824 ORTHO05D003555 5.5e-11 72.0 49 63.3
BcaC04g23467 Brassica carinata HOM05D000824 ORTHO05D003555 7.1e-11 71.6 49 65.3
BcaC06g33184 Brassica carinata HOM05D000824 ORTHO05D003555 7.1e-11 71.6 49 65.3
A03p46710 Brassica napus HOM05D000824 ORTHO05D003555 7.1e-11 71.6 49 65.3
A09p07190 Brassica napus HOM05D000824 ORTHO05D003555 7.1e-11 71.6 49 65.3
C09p08030 Brassica napus HOM05D000824 ORTHO05D003555 7.1e-11 71.6 49 65.3
BraA03t13794Z Brassica rapa HOM05D000824 ORTHO05D003555 7.1e-11 71.6 49 65.3
BraA09t36368Z Brassica rapa HOM05D000824 ORTHO05D003555 7.1e-11 71.6 49 65.3
MELO3C017228.2 Cucumis melo HOM05D000824 ORTHO05D003555 7.1e-11 71.6 58 63.8
Sp2g24310 Schrenkiella parvula HOM05D000824 ORTHO05D003555 7.1e-11 71.6 49 65.3
AL8G37660 Arabidopsis lyrata HOM05D000824 ORTHO05D003555 9.3e-11 71.2 49 65.3
AT5G61000 Arabidopsis thaliana HOM05D000824 ORTHO05D003555 9.3e-11 71.2 49 65.3
Thhalv10003822m.g Eutrema salsugineum HOM05D000824 ORTHO05D003555 9.3e-11 71.2 49 65.3
SHI27090 Sapria himalayana HOM05D000824 ORTHO05D003555 9.3e-11 71.2 49 73.5
Aa31LG3G18510 Aethionema arabicum HOM05D000824 ORTHO05D003555 1.6e-10 70.5 49 63.3
BcaNung06900 Brassica carinata HOM05D000824 ORTHO05D003555 1.6e-10 70.5 49 63.3
BolC9t53717H Brassica oleracea HOM05D000824 ORTHO05D003555 1.6e-10 70.5 49 63.3
Carub.0008s2169 Capsella rubella HOM05D000824 ORTHO05D003555 1.6e-10 70.5 49 65.3
Gohir.D03G096700 Gossypium hirsutum HOM05D000824 ORTHO05D003555 2.1e-10 70.1 49 59.2
TPR.G2021 Trifolium pratense HOM05D000824 ORTHO05D003555 2.7e-10 69.7 49 65.3
CARHR274710 Cardamine hirsuta HOM05D000824 ORTHO05D003555 3.5e-10 69.3 49 63.3
COL.COLO4_06851 Corchorus olitorius HOM05D000824 ORTHO05D003555 4.6e-10 68.9 49 59.2
Thecc.03G102500 Theobroma cacao HOM05D000824 ORTHO05D003555 4.6e-10 68.9 49 63.3
Duzib084G0695 Durio zibethinus HOM05D000824 ORTHO05D003555 7.9e-10 68.2 49 61.2
Duzib205G0152 Durio zibethinus HOM05D000824 ORTHO05D003555 1.8e-09 67.0 49 61.2
CSS0028547 Camellia sinensis var. sinensis HOM05D016809 ORTHO05D003555 8.7e-09 64.7 58 60.3
Mapoly0109s0044 Marchantia polymorpha HOM05D000824 ORTHO05D003555 1.5e-08 63.9 49 59.2
FAN08G1674 Fragaria x ananassa HOM05D000824 ORTHO05D003555 3.3e-08 62.8 62 58.1
GSVIVG01023662001 Vitis vinifera HOM05D000824 ORTHO05D003555 7.4e-08 61.6 46 60.9
GSVIVG01032319001 Vitis vinifera HOM05D000824 ORTHO05D003555 2.8e-07 59.7 46 58.7
Nn3g17458 Nelumbo nucifera HOM05D000824 ORTHO05D003555 8.2e-07 58.2 36 75.0
CBR_g23266 Chara braunii HOM05D000824 ORTHO05D003555 1.4e-06 57.4 49 51.0


User provided reference genes

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