Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005149 Camellia sinensis var. sinensis HOM05D002794 ORTHO05D003763 5.3e-38 160.6 86 100.0
CSS0000580 Camellia sinensis var. sinensis HOM05D002794 ORTHO05D003763 8.0e-26 120.2 78 88.5
Lj6g0005762 Lotus japonicus HOM05D002794 ORTHO05D003763 8.8e-25 116.7 78 87.2
Eucgr.D00651 Eucalyptus grandis HOM05D002794 ORTHO05D003763 2.6e-24 115.2 78 85.9
TAR624G1447 Trochodendron aralioides HOM05D002794 ORTHO05D003763 2.6e-24 115.2 78 85.9
TAR626G0204 Trochodendron aralioides HOM05D002794 ORTHO05D003763 2.6e-24 115.2 78 85.9
CiPaw.09G055200 Carya illinoinensis HOM05D002794 ORTHO05D003763 3.3e-24 114.8 78 87.2
Hma1.2p1_1719F.1_g299220 Hydrangea macrophylla HOM05D002794 ORTHO05D003763 3.3e-24 114.8 78 85.9
EL10Ac8g20333 Beta vulgaris HOM05D002794 ORTHO05D003763 5.7e-24 114.0 78 84.6
Ciclev10014734m.g Citrus clementina HOM05D002794 ORTHO05D003763 5.7e-24 114.0 78 84.6
Glyma.13G241800 Glycine max HOM05D002794 ORTHO05D003763 7.5e-24 113.6 78 84.6
Glyma.15G071600 Glycine max HOM05D002794 ORTHO05D003763 7.5e-24 113.6 78 84.6
CSS0002732 Camellia sinensis var. sinensis HOM05D002794 ORTHO05D003763 9.7e-24 113.2 78 83.3
CSS0042545 Camellia sinensis var. sinensis HOM05D002794 ORTHO05D003763 9.7e-24 113.2 78 83.3
CiPaw.10G045900 Carya illinoinensis HOM05D002794 ORTHO05D003763 1.7e-23 112.5 78 85.9
Haze_06521 Corylus avellana HOM05D002794 ORTHO05D003763 1.7e-23 112.5 78 84.6
Sed0014333 Sechium edule HOM05D002794 ORTHO05D003763 2.8e-23 111.7 78 83.3
CAN.G1627.21 Capsicum annuum HOM05D002794 ORTHO05D003763 3.7e-23 111.3 78 83.3
Peaxi162Scf01163g00119 Petunia axillaris HOM05D002794 ORTHO05D003763 3.7e-23 111.3 78 83.3
Psat6g214160 Pisum sativum HOM05D002794 ORTHO05D003763 3.7e-23 111.3 78 83.3
Sed0016399 Sechium edule HOM05D002794 ORTHO05D003763 3.7e-23 111.3 78 83.3
Solyc02g078610.4 Solanum lycopersicum HOM05D002794 ORTHO05D003763 3.7e-23 111.3 78 83.3
Sopen02g023470 Solanum pennellii HOM05D002794 ORTHO05D003763 3.7e-23 111.3 78 83.3
TPR.G12067 Trifolium pratense HOM05D002794 ORTHO05D003763 3.7e-23 111.3 78 83.3
Peaxi162Scf01021g00126 Petunia axillaris HOM05D002794 ORTHO05D003763 8.3e-23 110.2 78 82.1
Potri.011G047600 Populus trichocarpa HOM05D002794 ORTHO05D003763 8.3e-23 110.2 78 82.1
Sabra11G0033000 Salix brachista HOM05D002794 ORTHO05D003763 8.3e-23 110.2 78 82.1
PGR042G0244 Punica granatum HOM05D002794 ORTHO05D003763 1.4e-22 109.4 78 82.1
PGSC0003DMG400022432 Solanum tuberosum HOM05D002794 ORTHO05D003763 1.4e-22 109.4 78 82.1
Atru.chr10.1951 Acer truncatum HOM05D002794 ORTHO05D003763 1.8e-22 109.0 78 83.3
Potri.004G039000 Populus trichocarpa HOM05D002794 ORTHO05D003763 1.8e-22 109.0 78 80.8
Sabra04G0023900 Salix brachista HOM05D002794 ORTHO05D003763 1.8e-22 109.0 78 80.8
AUR62014781 Chenopodium quinoa HOM05D002794 ORTHO05D003763 3.1e-22 108.2 78 79.5
AUR62016968 Chenopodium quinoa HOM05D002794 ORTHO05D003763 3.1e-22 108.2 78 79.5
Solyc03g006520.3 Solanum lycopersicum HOM05D002794 ORTHO05D003763 4.1e-22 107.8 78 79.5
Sopen03g002520 Solanum pennellii HOM05D002794 ORTHO05D003763 4.1e-22 107.8 78 79.5
PGSC0003DMG400026857 Solanum tuberosum HOM05D002794 ORTHO05D003763 4.1e-22 107.8 78 79.5
RcHm_v2.0_Chr5g0007761 Rosa chinensis HOM05D002794 ORTHO05D003763 7.0e-22 107.1 79 82.3
Gohir.D06G130400 Gossypium hirsutum HOM05D002794 ORTHO05D003763 9.1e-22 106.7 78 79.5
Hund21250 Selenicereus undatus HOM05D002794 ORTHO05D003763 9.1e-22 106.7 78 78.2
Rhsim02G0123600 Rhododendron simsii HOM05D002794 ORTHO05D003763 1.2e-21 106.3 79 81.0
Actinidia01901 Actinidia chinensis HOM05D002794 ORTHO05D003763 2.0e-21 105.5 78 78.2
Aa31LG6G3640 Aethionema arabicum HOM05D002794 ORTHO05D003763 3.5e-21 104.8 78 80.8
Aqoxy3G03900 Aquilegia oxysepala HOM05D002794 ORTHO05D003763 3.5e-21 104.8 81 77.8
Aqoxy5G00583 Aquilegia oxysepala HOM05D002794 ORTHO05D003763 3.5e-21 104.8 81 77.8
MBI18_g17022_MAGBIO Magnolia biondii HOM05D002794 ORTHO05D003763 4.5e-21 104.4 78 78.2
Nitab4.5_0001833g0140 Nicotiana tabacum HOM05D002794 ORTHO05D003763 4.5e-21 104.4 75 80.0
SGA_v2.0_scaffold22G09776 Striga asiatica HOM05D002794 ORTHO05D003763 4.5e-21 104.4 78 76.9
HPP92_014808 Vanilla planifolia HOM05D002794 ORTHO05D003763 4.5e-21 104.4 78 76.9
vmacro03843 Vaccinium macrocarpon HOM05D002794 ORTHO05D003763 7.7e-21 103.6 80 78.8
Aa31LG9G9480 Aethionema arabicum HOM05D002794 ORTHO05D003763 1.0e-20 103.2 78 79.5
Nn1g06626 Nelumbo nucifera HOM05D002794 ORTHO05D003763 1.0e-20 103.2 78 79.5
Nn1g04005 Nelumbo nucifera HOM05D002794 ORTHO05D003763 2.2e-20 102.1 78 78.2
VMungo0540G1808 Vigna mungo HOM05D002794 ORTHO05D003763 2.2e-20 102.1 78 79.5
TPR.G29054 Trifolium pratense HOM05D002794 ORTHO05D003763 2.9e-20 101.7 75 82.7
Glyma.13G182600 Glycine max HOM05D002794 ORTHO05D003763 3.8e-20 101.3 79 77.2
Migut.H01505 Erythranthe guttata HOM05D002794 ORTHO05D003763 6.5e-20 100.5 78 74.4
THA.LOC104812811 Tarenaya hassleriana HOM05D002794 ORTHO05D003763 8.5e-20 100.1 78 76.9
THA.LOC104812959 Tarenaya hassleriana HOM05D002794 ORTHO05D003763 8.5e-20 100.1 78 76.9
PSO675G3577 Papaver somniferum HOM05D002794 ORTHO05D003763 1.5e-19 99.4 81 75.3
QL05p039258 Quercus lobata HOM05D002794 ORTHO05D003763 1.5e-19 99.4 77 77.9
Phvul.006G188200 Phaseolus vulgaris HOM05D002794 ORTHO05D003763 2.5e-19 98.6 78 76.9
ClCG11G010460 Citrullus lanatus HOM05D002794 ORTHO05D003763 3.2e-19 98.2 78 76.9
MELO3C008690.2 Cucumis melo HOM05D002794 ORTHO05D003763 3.2e-19 98.2 78 76.9
CsaV3_2G009900 Cucumis sativus L. HOM05D002794 ORTHO05D003763 3.2e-19 98.2 78 76.9
RhsimUnG0043800 Rhododendron simsii HOM05D002794 ORTHO05D003763 3.2e-19 98.2 78 71.8
Medtr2g013350 Medicago truncatula HOM05D002794 ORTHO05D003763 4.2e-19 97.8 77 76.6
Prupe.4G042600 Prunus persica HOM05D002794 ORTHO05D003763 4.2e-19 97.8 78 75.6
CANSAT35G1204 Cannabis sativa HOM05D002794 ORTHO05D003763 5.5e-19 97.4 78 75.6
Ca_00324_v3 Cicer arietinum L. HOM05D002794 ORTHO05D003763 5.5e-19 97.4 78 75.6
DCAR_004112 Daucus carota HOM05D002794 ORTHO05D003763 9.4e-19 96.7 78 74.4
Os02g0827300 Oryza sativa ssp. japonica HOM05D002794 ORTHO05D003763 9.4e-19 96.7 78 75.6
vmacro15890 Vaccinium macrocarpon HOM05D002794 ORTHO05D003763 1.6e-18 95.9 78 74.4
Manes.16G024600 Manihot esculenta HOM05D002794 ORTHO05D003763 2.1e-18 95.5 78 73.1
Aqoxy7G01746 Aquilegia oxysepala HOM05D002794 ORTHO05D003763 2.7e-18 95.1 81 72.8
Manes.17G042900 Manihot esculenta HOM05D002794 ORTHO05D003763 3.6e-18 94.7 78 71.8
Psat1g205880 Pisum sativum HOM05D002794 ORTHO05D003763 3.6e-18 94.7 78 75.6
Hund23693 Selenicereus undatus HOM05D002794 ORTHO05D003763 3.6e-18 94.7 78 73.1
GSVIVG01002655001 Vitis vinifera HOM05D002794 ORTHO05D003763 3.6e-18 94.7 78 73.1
TWI38G2081 Tripterygium wilfordii HOM05D002794 ORTHO05D003763 6.1e-18 94.0 78 73.1
Duzib160G0262 Durio zibethinus HOM05D002794 ORTHO05D003763 8.0e-18 93.6 78 73.1
MD05G1318200 Malus domestica HOM05D002794 ORTHO05D003763 8.0e-18 93.6 78 71.8
Medtr4g089085 Medicago truncatula HOM05D002794 ORTHO05D003763 8.0e-18 93.6 78 74.4
RcHm_v2.0_Chr2g0163041 Rosa chinensis HOM05D002794 ORTHO05D003763 8.0e-18 93.6 80 73.8
Nitab4.5_0003063g0060 Nicotiana tabacum HOM05D002794 ORTHO05D003763 1.8e-17 92.4 78 73.1
Nitab4.5_0003668g0030 Nicotiana tabacum HOM05D002794 ORTHO05D003763 1.8e-17 92.4 78 73.1
Oeu016115.2 Olea europaea HOM05D002794 ORTHO05D003763 1.8e-17 92.4 78 73.1
Oeu050833.1 Olea europaea HOM05D002794 ORTHO05D003763 1.8e-17 92.4 78 71.8
Duzib235G0583 Durio zibethinus HOM05D002794 ORTHO05D003763 2.3e-17 92.0 78 71.8
Gohir.A06G125702 Gossypium hirsutum HOM05D002794 ORTHO05D003763 2.3e-17 92.0 78 71.8
SEGI_02703 Sequoiadendron giganteum HOM05D002794 ORTHO05D003763 2.3e-17 92.0 81 71.6
SEGI_11447 Sequoiadendron giganteum HOM05D002794 ORTHO05D003763 2.3e-17 92.0 81 71.6
Thecc.06G191900 Theobroma cacao HOM05D002794 ORTHO05D003763 3.0e-17 91.7 78 71.8
TWI63G1386 Tripterygium wilfordii HOM05D002794 ORTHO05D003763 4.0e-17 91.3 78 73.1
Ciclev10006607m.g Citrus clementina HOM05D002794 ORTHO05D003763 6.8e-17 90.5 85 64.7
Duzib192G0647 Durio zibethinus HOM05D002794 ORTHO05D003763 8.8e-17 90.1 78 70.5
arahy.Tifrunner.gnm1.ann1.IR33XW Arachis hypogaea HOM05D002794 ORTHO05D003763 2.6e-16 88.6 78 69.2
arahy.Tifrunner.gnm1.ann1.XZLA7I Arachis hypogaea HOM05D002794 ORTHO05D003763 2.6e-16 88.6 78 69.2
CBR_g29963 Chara braunii HOM05D002794 ORTHO05D003763 4.4e-16 87.8 80 66.2
Peaxi162Scf00535g00054 Petunia axillaris HOM05D002794 ORTHO05D003763 5.7e-16 87.4 72 73.6
Peaxi162Scf00535g00058 Petunia axillaris HOM05D002794 ORTHO05D003763 5.7e-16 87.4 72 73.6
Peaxi162Scf22083g00001 Petunia axillaris HOM05D002794 ORTHO05D003763 5.7e-16 87.4 72 73.6
Thhalv10024772m.g Eutrema salsugineum HOM05D002794 ORTHO05D003763 1.7e-15 85.9 78 70.5
HanXRQChr04g0097251 Helianthus annuus HOM05D002794 ORTHO05D003763 2.8e-15 85.1 78 67.9
PSO541G2705 Papaver somniferum HOM05D002794 ORTHO05D003763 2.8e-15 85.1 75 70.7
FvH4_6g45300 Fragaria vesca HOM05D002794 ORTHO05D003763 6.3e-15 84.0 74 68.9
BcaB03g11685 Brassica carinata HOM05D002794 ORTHO05D003763 8.3e-15 83.6 78 67.9
BcaC01g00687 Brassica carinata HOM05D002794 ORTHO05D003763 8.3e-15 83.6 78 67.9
BcaNung02772 Brassica carinata HOM05D002794 ORTHO05D003763 8.3e-15 83.6 78 67.9
A08p15050 Brassica napus HOM05D002794 ORTHO05D003763 8.3e-15 83.6 78 67.9
C03p83140 Brassica napus HOM05D002794 ORTHO05D003763 8.3e-15 83.6 78 67.9
BraA08t33486Z Brassica rapa HOM05D002794 ORTHO05D003763 8.3e-15 83.6 78 67.9
C01p15590 Brassica napus HOM05D002794 ORTHO05D003763 1.4e-14 82.8 76 68.4
BolC1t01511H Brassica oleracea HOM05D002794 ORTHO05D003763 1.4e-14 82.8 76 68.4
Atru.chr4.2241 Acer truncatum HOM05D002794 ORTHO05D003763 2.4e-14 82.0 65 76.9
A01p12950 Brassica napus HOM05D002794 ORTHO05D003763 2.4e-14 82.0 76 67.1
Lj2C286T5 Lonicera japonica HOM05D002794 ORTHO05D003763 2.4e-14 82.0 78 66.7
Sp7g19760 Schrenkiella parvula HOM05D002794 ORTHO05D003763 2.4e-14 82.0 79 70.9
BraA01t01239Z Brassica rapa HOM05D002794 ORTHO05D003763 4.1e-14 81.3 76 67.1
FAN14G4862 Fragaria x ananassa HOM05D002794 ORTHO05D003763 5.4e-14 80.9 74 67.6
ATR0006G055 Amborella trichopoda HOM05D002794 ORTHO05D003763 7.0e-14 80.5 79 65.8
CDE02G3438 Ceratophyllum demersum HOM05D002794 ORTHO05D003763 7.0e-14 80.5 78 66.7
CDE08G0397 Ceratophyllum demersum HOM05D002794 ORTHO05D003763 7.0e-14 80.5 78 66.7
FvH4_3g04740 Fragaria vesca HOM05D002794 ORTHO05D003763 7.0e-14 80.5 80 67.5
FAN11G0433 Fragaria x ananassa HOM05D002794 ORTHO05D003763 7.0e-14 80.5 80 67.5
FAN16G3580 Fragaria x ananassa HOM05D002794 ORTHO05D003763 7.0e-14 80.5 80 67.5
FAN21G3653 Fragaria x ananassa HOM05D002794 ORTHO05D003763 7.0e-14 80.5 80 67.5
FAN25G2654 Fragaria x ananassa HOM05D002794 ORTHO05D003763 7.0e-14 80.5 80 67.5
Lalb_Chr16g0383541 Lupinus albus HOM05D002794 ORTHO05D003763 1.6e-13 79.3 78 65.4
CARHR228380 Cardamine hirsuta HOM05D002794 ORTHO05D003763 2.0e-13 79.0 79 64.6
FAN02G3067 Fragaria x ananassa HOM05D002794 ORTHO05D003763 2.0e-13 79.0 73 67.1
Pp3c17_13490 Physcomitrium patens HOM05D002794 ORTHO05D003763 2.7e-13 78.6 80 62.5
Cc02_g12900 Coffea canephora HOM05D002794 ORTHO05D003763 3.5e-13 78.2 56 78.6
AL7G32340 Arabidopsis lyrata HOM05D002794 ORTHO05D003763 4.5e-13 77.8 80 63.8
AT4G21660 Arabidopsis thaliana HOM05D002794 ORTHO05D003763 4.5e-13 77.8 80 63.8
Carub.0007s1975 Capsella rubella HOM05D002794 ORTHO05D003763 4.5e-13 77.8 80 63.8
BolC3t20597H Brassica oleracea HOM05D002794 ORTHO05D003763 5.9e-13 77.4 78 61.5
Cfa004795 Carpinus fangiana HOM05D002794 ORTHO05D003763 7.7e-13 77.0 80 66.2
Pp3c14_10510 Physcomitrium patens HOM05D002794 ORTHO05D003763 1.0e-12 76.6 80 61.2
Ah.09g235770 Amaranthus hybridus HOM05D002794 ORTHO05D003763 1.3e-12 76.3 78 62.8
Carub.0007s2870 Capsella rubella HOM05D002794 ORTHO05D003763 1.3e-12 76.3 80 62.5
Ca_25735_v3 Cicer arietinum L. HOM05D002794 ORTHO05D003763 2.3e-12 75.5 54 79.6
Lalb_Chr05g0218331 Lupinus albus HOM05D002794 ORTHO05D003763 2.3e-12 75.5 78 62.8
Lalb_Chr09g0327551 Lupinus albus HOM05D002794 ORTHO05D003763 2.3e-12 75.5 78 62.8
Gorai.010G152200 Gossypium raimondii HOM05D002794 ORTHO05D003763 6.6e-12 73.9 54 75.9
Hma1.2p1_0191F.1_g083110 Hydrangea macrophylla HOM05D002794 ORTHO05D003763 6.6e-12 73.9 54 77.8
Lsat_1_v5_gn_1_127401 Lactuca sativa HOM05D002794 ORTHO05D003763 6.6e-12 73.9 55 74.5
Ah.14g089250 Amaranthus hybridus HOM05D002794 ORTHO05D003763 8.6e-12 73.6 78 61.5
Zm00001eb229010 Zea mays HOM05D002794 ORTHO05D003763 8.6e-12 73.6 78 62.8
COL.COLO4_31514 Corchorus olitorius HOM05D002794 ORTHO05D003763 1.9e-11 72.4 54 74.1
ECA248G2629 Erigeron canadensis HOM05D002794 ORTHO05D003763 5.5e-11 70.9 73 64.4
DCAR_001736 Daucus carota HOM05D002794 ORTHO05D003763 1.2e-10 69.7 73 64.4
MD10G1297600 Malus domestica HOM05D002794 ORTHO05D003763 2.8e-10 68.6 54 70.4
Rhsim02G0211400 Rhododendron simsii HOM05D002794 ORTHO05D003763 4.7e-10 67.8 73 61.6
CSS0005467 Camellia sinensis var. sinensis HOM05D002794 ORTHO05D110402 1.0e-09 66.6 73 63.0
vmacro04586 Vaccinium macrocarpon HOM05D002794 ORTHO05D003763 3.0e-09 65.1 77 58.4
vmacro23256 Vaccinium macrocarpon HOM05D002794 ORTHO05D003763 5.2e-09 64.3 69 59.4
AagrBONN_evm.TU.Sc2ySwM_344.3345 Anthoceros agrestis HOM05D002794 ORTHO05D003763 6.8e-09 63.9 80 56.2
COL.COLO4_31110 Corchorus olitorius HOM05D002794 ORTHO05D003763 6.8e-09 63.9 54 66.7
HanXRQChr16g0518241 Helianthus annuus HOM05D002794 ORTHO05D003763 8.9e-09 63.5 73 58.9
Lj1g0004029 Lotus japonicus HOM05D002794 ORTHO05D003763 2.0e-08 62.4 76 56.6
Mapoly0051s0020 Marchantia polymorpha HOM05D002794 ORTHO05D003763 2.6e-08 62.0 80 55.0
Lj4g0023033 Lotus japonicus HOM05D002794 ORTHO05D003763 4.4e-08 61.2 75 56.0
Zm00001eb271720 Zea mays HOM05D002794 ORTHO05D003763 7.5e-08 60.5 77 55.8
Nitab4.5_0000960g0150 Nicotiana tabacum HOM05D002794 ORTHO05D003763 1.3e-07 59.7 80 55.0
Rhsim07G0122000 Rhododendron simsii HOM05D002794 ORTHO05D003763 2.2e-07 58.9 71 59.2
Nitab4.5_0007957g0040 Nicotiana tabacum HOM05D002794 ORTHO05D003763 6.3e-07 57.4 76 55.3
Rhsim08G0091600 Rhododendron simsii HOM05D002794 ORTHO05D003763 1.4e-06 56.2 71 54.9


User provided reference genes

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