Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005003 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 2.5e-203 711.8 343 100.0
Actinidia21731 Actinidia chinensis HOM05D004712 ORTHO05D005306 7.7e-181 637.1 343 88.6
GSVIVG01016906001 Vitis vinifera HOM05D004712 ORTHO05D005306 1.5e-168 596.3 337 83.1
Dinv23416 Davidia involucrata HOM05D004712 ORTHO05D005306 1.1e-166 590.1 338 83.1
Rhsim08G0230100 Rhododendron simsii HOM05D004712 ORTHO05D005306 1.9e-166 589.3 384 75.8
TAR624G0834 Trochodendron aralioides HOM05D004712 ORTHO05D005306 2.4e-166 589.0 331 85.5
GSVIVG01035336001 Vitis vinifera HOM05D004712 ORTHO05D005306 5.0e-164 581.3 338 82.2
Rhsim12G0204300 Rhododendron simsii HOM05D004712 ORTHO05D005306 1.9e-163 579.3 346 79.5
Nn6g35381 Nelumbo nucifera HOM05D004712 ORTHO05D005306 1.2e-162 576.6 338 81.4
QL05p017273 Quercus lobata HOM05D004712 ORTHO05D005306 1.1e-161 573.5 337 81.3
Nn6g35377 Nelumbo nucifera HOM05D004712 ORTHO05D005306 1.4e-161 573.2 331 82.8
QL05p017569 Quercus lobata HOM05D004712 ORTHO05D005306 9.8e-160 567.0 337 80.7
CANSAT25G2372 Cannabis sativa HOM05D004712 ORTHO05D005306 6.4e-159 564.3 338 78.7
QL02p001773 Quercus lobata HOM05D004712 ORTHO05D005306 6.4e-159 564.3 335 81.2
Ciclev10008867m.g Citrus clementina HOM05D004712 ORTHO05D005306 3.2e-158 562.0 336 80.4
Prupe.1G416100 Prunus persica HOM05D004712 ORTHO05D005306 1.2e-157 560.1 338 79.3
Thecc.09G050100 Theobroma cacao HOM05D004712 ORTHO05D005306 5.1e-156 554.7 331 80.4
PGSC0003DMG401002514 Solanum tuberosum HOM05D004712 ORTHO05D005306 1.5e-155 553.1 339 75.8
Atru.chr7.2032 Acer truncatum HOM05D004712 ORTHO05D005306 4.3e-155 551.6 309 83.8
COL.COLO4_21017 Corchorus olitorius HOM05D004712 ORTHO05D005306 2.8e-154 548.9 320 82.8
Nitab4.5_0005661g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 2.8e-154 548.9 339 77.6
Gohir.A05G044400 Gossypium hirsutum HOM05D004712 ORTHO05D005306 3.6e-154 548.5 331 79.8
ClCG08G016850 Citrullus lanatus HOM05D004712 ORTHO05D005306 4.7e-154 548.1 338 75.7
Migut.A00161 Erythranthe guttata HOM05D004712 ORTHO05D005306 4.7e-154 548.1 333 76.9
Manes.03G046000 Manihot esculenta HOM05D004712 ORTHO05D005306 4.7e-154 548.1 332 78.6
Aqoxy7G03946 Aquilegia oxysepala HOM05D004712 ORTHO05D005306 6.2e-154 547.7 321 79.8
CsaV3_2G025770 Cucumis sativus L. HOM05D004712 ORTHO05D005306 8.1e-154 547.4 338 75.4
Duzib168G2010 Durio zibethinus HOM05D004712 ORTHO05D005306 8.1e-154 547.4 337 78.0
MD08G1074400 Malus domestica HOM05D004712 ORTHO05D005306 1.4e-153 546.6 338 78.1
Gohir.D05G046000 Gossypium hirsutum HOM05D004712 ORTHO05D005306 3.1e-153 545.4 331 79.2
CiPaw.15G042700 Carya illinoinensis HOM05D004712 ORTHO05D005306 4.0e-153 545.0 338 77.2
Peaxi162Scf00038g01243 Petunia axillaris HOM05D004712 ORTHO05D005306 6.8e-153 544.3 336 77.7
CSS0042817 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 1.2e-152 543.5 324 81.5
Potri.018G058900 Populus trichocarpa HOM05D004712 ORTHO05D005306 2.6e-152 542.3 339 76.7
THA.LOC104803739 Tarenaya hassleriana HOM05D004712 ORTHO05D005306 4.4e-152 541.6 338 74.9
Cc08_g10100 Coffea canephora HOM05D004712 ORTHO05D005306 1.3e-151 540.0 333 75.7
HanXRQChr17g0538901 Helianthus annuus HOM05D004712 ORTHO05D005306 1.3e-151 540.0 338 75.7
RcHm_v2.0_Chr6g0310381 Rosa chinensis HOM05D004712 ORTHO05D005306 1.7e-151 539.7 338 75.4
Hund03367 Selenicereus undatus HOM05D004712 ORTHO05D005306 2.2e-151 539.3 338 76.3
FAN20G0488 Fragaria x ananassa HOM05D004712 ORTHO05D005306 3.7e-151 538.5 328 77.7
SalBow4G3242 Salvia bowleyana HOM05D004712 ORTHO05D005306 1.4e-150 536.6 332 74.7
FAN27G0349 Fragaria x ananassa HOM05D004712 ORTHO05D005306 5.4e-150 534.6 328 77.4
Lalb_Chr22g0355941 Lupinus albus HOM05D004712 ORTHO05D005306 9.2e-150 533.9 338 75.4
Potri.006G234000 Populus trichocarpa HOM05D004712 ORTHO05D005306 9.2e-150 533.9 335 75.2
Duzib150G0899 Durio zibethinus HOM05D004712 ORTHO05D005306 1.6e-149 533.1 331 77.0
FvH4_2g32310 Fragaria vesca HOM05D004712 ORTHO05D005306 2.1e-149 532.7 328 76.8
AUR62009206 Chenopodium quinoa HOM05D004712 ORTHO05D005306 4.6e-149 531.6 338 75.1
Hma1.2p1_1266F.1_g271360 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 4.6e-149 531.6 307 81.4
EL10Ac2g03950 Beta vulgaris HOM05D004712 ORTHO05D005306 6.0e-149 531.2 338 74.9
ATR0789G022 Amborella trichopoda HOM05D004712 ORTHO05D005306 2.3e-148 529.3 336 75.0
ECA246G0363 Erigeron canadensis HOM05D004712 ORTHO05D005306 8.6e-148 527.3 343 72.9
FAN15G0413 Fragaria x ananassa HOM05D004712 ORTHO05D005306 8.6e-148 527.3 328 76.5
Lj5g0015176 Lotus japonicus HOM05D004712 ORTHO05D005306 1.5e-147 526.6 329 78.1
FAN24G2925 Fragaria x ananassa HOM05D004712 ORTHO05D005306 1.9e-147 526.2 328 76.2
Haze_18228 Corylus avellana HOM05D004712 ORTHO05D005306 3.3e-147 525.4 338 76.3
TWI63G0904 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 5.6e-147 524.6 330 77.0
Ca_13194_v3 Cicer arietinum L. HOM05D004712 ORTHO05D005306 9.5e-147 523.9 331 74.6
TPR.G13042 Trifolium pratense HOM05D004712 ORTHO05D005306 6.2e-146 521.2 337 73.0
Peaxi162Scf00840g00117 Petunia axillaris HOM05D004712 ORTHO05D005306 1.1e-145 520.4 335 73.4
BcaB06g29616 Brassica carinata HOM05D004712 ORTHO05D005306 3.1e-145 518.8 339 70.5
VMungo0647G0552 Vigna mungo HOM05D004712 ORTHO05D005306 3.1e-145 518.8 331 74.9
PSO210G7282 Papaver somniferum HOM05D004712 ORTHO05D005306 5.2e-145 518.1 326 75.2
Gohir.D03G057300 Gossypium hirsutum HOM05D004712 ORTHO05D005306 8.9e-145 517.3 339 70.5
PSO210G0832 Papaver somniferum HOM05D004712 ORTHO05D005306 1.2e-144 516.9 326 74.8
Glyma.17G231700 Glycine max HOM05D004712 ORTHO05D005306 1.5e-144 516.5 341 73.0
Sabra06G0182200 Salix brachista HOM05D004712 ORTHO05D005306 1.5e-144 516.5 335 73.7
Nitab4.5_0010821g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 2.0e-144 516.2 318 77.4
CARHR115280 Cardamine hirsuta HOM05D004712 ORTHO05D005306 2.6e-144 515.8 339 72.0
A04p20130 Brassica napus HOM05D004712 ORTHO05D005306 3.4e-144 515.4 340 70.6
BraA04t17594Z Brassica rapa HOM05D004712 ORTHO05D005306 3.4e-144 515.4 340 70.6
DCAR_004451 Daucus carota HOM05D004712 ORTHO05D005306 4.4e-144 515.0 332 75.6
Sp4g05810 Schrenkiella parvula HOM05D004712 ORTHO05D005306 4.4e-144 515.0 339 70.8
BcaC02g08320 Brassica carinata HOM05D004712 ORTHO05D005306 5.8e-144 514.6 340 70.3
BolC4t27113H Brassica oleracea HOM05D004712 ORTHO05D005306 5.8e-144 514.6 340 70.3
Glyma.14G091700 Glycine max HOM05D004712 ORTHO05D005306 5.8e-144 514.6 330 74.5
C04p55830 Brassica napus HOM05D004712 ORTHO05D005306 7.6e-144 514.2 340 70.3
AT2G25910 Arabidopsis thaliana HOM05D004712 ORTHO05D005306 9.9e-144 513.8 339 70.8
Phvul.001G032800 Phaseolus vulgaris HOM05D004712 ORTHO05D005306 1.3e-143 513.5 333 72.7
Sc09g0009600 Simmondsia chinensis HOM05D004712 ORTHO05D005306 1.3e-143 513.5 338 72.5
MELO3C010771.2 Cucumis melo HOM05D004712 ORTHO05D005306 2.9e-143 512.3 324 73.5
Thhalv10002033m.g Eutrema salsugineum HOM05D004712 ORTHO05D005306 6.4e-143 511.1 338 70.4
MBI04_g12189_MAGBIO Magnolia biondii HOM05D004712 ORTHO05D005306 8.4e-143 510.8 354 73.2
Psat6g019200 Pisum sativum HOM05D004712 ORTHO05D005306 8.4e-143 510.8 333 73.3
Medtr1g016970 Medicago truncatula HOM05D004712 ORTHO05D005306 1.1e-142 510.4 329 72.3
AL4G17960 Arabidopsis lyrata HOM05D004712 ORTHO05D005306 1.4e-142 510.0 340 71.2
Sabra18G0050600 Salix brachista HOM05D004712 ORTHO05D005306 1.9e-142 509.6 349 71.3
Cfa017921 Carpinus fangiana HOM05D004712 ORTHO05D005306 2.4e-142 509.2 338 73.7
Aa31LG5G9770 Aethionema arabicum HOM05D004712 ORTHO05D005306 4.2e-142 508.4 350 70.3
AUR62040203 Chenopodium quinoa HOM05D004712 ORTHO05D005306 7.8e-141 504.2 338 72.2
Solyc08g065880.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 7.8e-141 504.2 326 72.1
Sopen08g019580 Solanum pennellii HOM05D004712 ORTHO05D005306 1.0e-140 503.8 326 72.1
PGR031G0938 Punica granatum HOM05D004712 ORTHO05D005306 1.3e-140 503.4 321 73.2
Lsat_1_v5_gn_3_27140 Lactuca sativa HOM05D004712 ORTHO05D005306 3.3e-139 498.8 307 75.2
Gorai.009G047400 Gossypium raimondii HOM05D004712 ORTHO05D005306 2.4e-137 492.7 294 80.6
vmacro05273 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 4.0e-137 491.9 333 72.7
Nitab4.5_0005029g0040 Nicotiana tabacum HOM05D004712 ORTHO05D005306 2.6e-136 489.2 329 70.5
TWI34G1658 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 4.4e-136 488.4 316 75.3
arahy.Tifrunner.gnm1.ann1.QZ1T53 Arachis hypogaea HOM05D004712 ORTHO05D005306 9.9e-136 487.3 338 69.5
Nitab4.5_0000359g0220 Nicotiana tabacum HOM05D004712 ORTHO05D005306 9.9e-136 487.3 329 70.5
SEGI_23712 Sequoiadendron giganteum HOM05D004712 ORTHO05D005306 1.7e-135 486.5 315 72.4
Os01g0566900 Oryza sativa ssp. japonica HOM05D004712 ORTHO05D005306 5.4e-134 481.5 319 69.6
arahy.Tifrunner.gnm1.ann1.289CQF Arachis hypogaea HOM05D004712 ORTHO05D005306 9.3e-134 480.7 338 68.9
Dinv30410 Davidia involucrata HOM05D004712 ORTHO05D005306 1.2e-133 480.3 265 87.5
Gohir.A02G116301 Gossypium hirsutum HOM05D004712 ORTHO05D005306 2.7e-133 479.2 307 70.7
Lj5A50G64 Lonicera japonica HOM05D004712 ORTHO05D005306 2.7e-133 479.2 290 79.3
Solyc03g121250.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 1.7e-132 476.5 283 78.8
Lj7A695G32 Lonicera japonica HOM05D004712 ORTHO05D005306 3.0e-132 475.7 318 72.6
Sopen01g026340 Solanum pennellii HOM05D000014 ORTHO05D005306 3.6e-130 468.8 313 71.2
vmacro17006 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 3.6e-130 468.8 403 60.5
Sed0015351 Sechium edule HOM05D004712 ORTHO05D005306 4.0e-129 465.3 330 68.8
HPP92_009150 Vanilla planifolia HOM05D004712 ORTHO05D005306 4.0e-129 465.3 331 66.2
CAN.G20.6 Capsicum annuum HOM05D004712 ORTHO05D005306 1.2e-128 463.8 299 72.9
Ah.10g034640 Amaranthus hybridus HOM05D004712 ORTHO05D005306 7.6e-128 461.1 355 63.4
AUR62040198 Chenopodium quinoa HOM05D004712 ORTHO05D005306 2.9e-127 459.1 319 70.2
Zm00001eb356940 Zea mays HOM05D004712 ORTHO05D005306 1.1e-126 457.2 330 67.6
Zm00001eb159970 Zea mays HOM05D004712 ORTHO05D005306 1.6e-125 453.4 319 68.7
AUR62031977 Chenopodium quinoa HOM05D004712 ORTHO05D005306 2.7e-125 452.6 303 68.0
Eucgr.C00628 Eucalyptus grandis HOM05D004712 ORTHO05D005306 4.8e-122 441.8 264 79.5
Sopen03g040060 Solanum pennellii HOM05D004712 ORTHO05D005306 2.4e-121 439.5 287 74.6
AagrBONN_evm.TU.Sc2ySwM_228.3302 Anthoceros agrestis HOM05D004712 ORTHO05D005306 9.0e-121 437.6 323 63.8
MD15G1062100 Malus domestica HOM05D004712 ORTHO05D005306 3.4e-120 435.6 338 64.2
Mapoly0072s0029 Marchantia polymorpha HOM05D004712 ORTHO05D005306 3.4e-120 435.6 314 66.2
Manes.16G077100 Manihot esculenta HOM05D004712 ORTHO05D005306 6.9e-113 411.4 244 80.3
Pp3c15_8210 Physcomitrium patens HOM05D004712 ORTHO05D005306 4.5e-112 408.7 317 61.2
CAN.G1143.35 Capsicum annuum HOM05D004712 ORTHO05D005306 1.8e-108 396.7 250 73.6
SMO174G0103 Selaginella moellendorffii HOM05D004712 ORTHO05D005306 1.9e-107 393.3 312 59.9
COL.COLO4_30565 Corchorus olitorius HOM05D004712 ORTHO05D005306 2.4e-105 386.3 260 70.4
AUR62022272 Chenopodium quinoa HOM05D004712 ORTHO05D005306 1.4e-94 350.5 226 69.9
Carub.0004s0573 Capsella rubella HOM05D004712 ORTHO05D005306 1.2e-93 347.4 221 73.8
Glyma.04G087900 Glycine max HOM05D004712 ORTHO05D005306 1.8e-89 333.6 317 56.8
Solyc01g060200.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 2.7e-85 319.7 305 54.1
unitig_748.g8268 Utricularia gibba HOM05D004712 ORTHO05D005306 2.8e-82 309.7 302 51.3
Pp3c9_13080 Physcomitrium patens HOM05D004712 ORTHO05D005306 3.7e-82 309.3 232 62.5
unitig_32.g10885 Utricularia gibba HOM05D004712 ORTHO05D005306 1.1e-73 281.2 268 54.5
Cpa.g.sc1834.1 Carica papaya HOM05D004712 ORTHO05D005306 1.8e-73 280.4 175 76.0
Gorai.003G060400 Gossypium raimondii HOM05D004712 ORTHO05D005306 2.1e-69 266.9 186 69.9
CDE06G1081 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 6.3e-66 255.4 167 71.9
Cpa.g.c30793.3 Carica papaya HOM05D004712 ORTHO05D005306 1.1e-57 228.0 130 81.5
SGA_v2.0_scaffold88G27214 Striga asiatica HOM05D004712 ORTHO05D005306 1.7e-55 220.7 139 70.5
CDE06G1637 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 6.8e-52 208.8 125 79.2
Glyma.20G062400 Glycine max HOM05D004712 ORTHO05D005306 2.2e-34 150.6 92 77.2
ATR0626G141 Amborella trichopoda HOM05D004712 ORTHO05D005306 6.0e-32 142.5 171 49.7
Cpa.g.sc131.9 Carica papaya HOM05D004712 ORTHO05D005306 5.8e-27 125.9 75 69.3
Cc04_g02330 Coffea canephora HOM05D004712 ORTHO05D005306 2.9e-26 123.6 169 42.6
TAR636G2080 Trochodendron aralioides HOM05D000850 ORTHO05D000266 2.9e-26 123.6 80 77.5
Cpa.g.sc131.11 Carica papaya HOM05D004712 ORTHO05D005306 3.5e-24 116.7 64 82.8
Hma1.2p1_0051F.1_g029750 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 6.6e-23 112.5 66 77.3
Cpa.g.sc131.8 Carica papaya HOM05D004712 ORTHO05D005306 4.3e-22 109.8 77 70.1
MSTRG.22613 Avicennia marina HOM05D004712 ORTHO05D005306 1.3e-15 88.2 68 63.2
COL.COLO4_30564 Corchorus olitorius HOM05D004712 ORTHO05D005306 3.9e-15 86.7 55 70.9
Nn4g24691 Nelumbo nucifera HOM05D004712 ORTHO05D005306 1.2e-11 75.1 41 78.0
EL10Ac9g21163 Beta vulgaris HOM05D004712 ORTHO05D005306 1.3e-10 71.6 78 50.0
Cre03.g152425 Chlamydomonas reinhardtii HOM05D004712 ORTHO05D005306 3.8e-10 70.1 212 26.4
MCO15G238 Micromonas commoda HOM05D015906 ORTHO05D005306 1.2e-08 65.1 95 33.7
MCO09G663 Micromonas commoda HOM05D015906 ORTHO05D005306 1.0e-07 62.0 171 27.5
Cre03.g152400 Chlamydomonas reinhardtii HOM05D015906 ORTHO05D028597 3.9e-07 60.1 211 26.5
FAN23G2178 Fragaria x ananassa HOM05D002024 ORTHO05D004352 3.3e-06 57.0 153 28.1
Psat3g086680 Pisum sativum HOM05D002024 ORTHO05D004352 3.3e-06 57.0 213 24.9
SMO351G0038 Selaginella moellendorffii HOM05D002024 ORTHO05D004352 9.6e-06 55.5 217 27.2


User provided reference genes

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