Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004710 Camellia sinensis var. sinensis HOM05D005567 ORTHO05D005651 5.1e-54 214.2 109 100.0
CSS0049309 Camellia sinensis var. sinensis HOM05D005567 ORTHO05D005651 1.0e-46 189.9 99 97.0
CSS0035269 Camellia sinensis var. sinensis HOM05D005567 ORTHO05D005651 2.8e-36 155.2 93 87.1
CSS0008572 Camellia sinensis var. sinensis HOM05D005567 ORTHO05D005651 1.4e-35 152.9 81 96.3
Hma1.2p1_1794F.1_g302670 Hydrangea macrophylla HOM05D005567 ORTHO05D005651 1.3e-33 146.4 91 83.5
vmacro03436 Vaccinium macrocarpon HOM05D005567 ORTHO05D005651 2.2e-33 145.6 78 93.6
Dinv32216 Davidia involucrata HOM05D005567 ORTHO05D005651 6.5e-33 144.1 78 91.0
Actinidia13448 Actinidia chinensis HOM05D005567 ORTHO05D005651 1.5e-32 142.9 78 91.0
Rhsim11G0051300 Rhododendron simsii HOM05D005567 ORTHO05D005651 1.5e-32 142.9 91 83.5
Duzib192G0463 Durio zibethinus HOM05D005567 ORTHO05D005651 3.2e-32 141.7 91 81.3
Rhsim13G0117000 Rhododendron simsii HOM05D005567 ORTHO05D005651 5.5e-32 141.0 91 82.4
COL.COLO4_31019 Corchorus olitorius HOM05D005567 ORTHO05D005651 9.4e-32 140.2 91 80.2
Gohir.A05G146500 Gossypium hirsutum HOM05D005567 ORTHO05D005651 1.2e-31 139.8 85 83.5
Gohir.D05G149000 Gossypium hirsutum HOM05D005567 ORTHO05D005651 1.2e-31 139.8 85 83.5
Gorai.009G153000 Gossypium raimondii HOM05D005567 ORTHO05D005651 1.2e-31 139.8 85 83.5
Nitab4.5_0002611g0120 Nicotiana tabacum HOM05D005567 ORTHO05D005651 1.2e-31 139.8 77 90.9
GSVIVG01021538001 Vitis vinifera HOM05D005567 ORTHO05D005651 1.2e-31 139.8 78 87.2
Nitab4.5_0003551g0060 Nicotiana tabacum HOM05D005567 ORTHO05D005651 1.6e-31 139.4 78 89.7
Potri.004G158000 Populus trichocarpa HOM05D005567 ORTHO05D005651 2.1e-31 139.0 85 81.2
TAR626G1087 Trochodendron aralioides HOM05D005567 ORTHO05D005651 2.1e-31 139.0 81 86.4
Oeu054932.1 Olea europaea HOM05D005567 ORTHO05D005651 2.7e-31 138.7 78 89.7
Prupe.4G084900 Prunus persica HOM05D005567 ORTHO05D005651 2.7e-31 138.7 78 88.5
TWI73G0487 Tripterygium wilfordii HOM05D005567 ORTHO05D005651 2.7e-31 138.7 85 81.2
ClCG01G024830 Citrullus lanatus HOM05D005567 ORTHO05D005651 3.6e-31 138.3 85 82.4
Manes.15G124500 Manihot esculenta HOM05D005567 ORTHO05D005651 3.6e-31 138.3 85 80.0
Oeu040093.1 Olea europaea HOM05D005567 ORTHO05D005651 3.6e-31 138.3 99 74.7
Solyc07g005890.3 Solanum lycopersicum HOM05D005567 ORTHO05D005651 4.7e-31 137.9 78 88.5
PGSC0003DMG401011204 Solanum tuberosum HOM05D005567 ORTHO05D005651 4.7e-31 137.9 78 88.5
Cfa000907 Carpinus fangiana HOM05D005567 ORTHO05D005651 8.0e-31 137.1 80 86.2
CiPaw.09G120700 Carya illinoinensis HOM05D005567 ORTHO05D005651 8.0e-31 137.1 81 85.2
Cc11_g02850 Coffea canephora HOM05D005567 ORTHO05D005651 8.0e-31 137.1 78 87.2
Eucgr.E02430 Eucalyptus grandis HOM05D005567 ORTHO05D005651 8.0e-31 137.1 85 80.0
PGSC0003DMG400022975 Solanum tuberosum HOM05D005567 ORTHO05D005651 8.0e-31 137.1 78 87.2
PGR035G0006 Punica granatum HOM05D005567 ORTHO05D005651 1.0e-30 136.7 78 87.2
Ciclev10025380m.g Citrus clementina HOM05D005567 ORTHO05D005651 1.4e-30 136.3 78 87.2
CANSAT35G1600 Cannabis sativa HOM05D005567 ORTHO05D005651 1.8e-30 136.0 78 85.9
CAN.G160.8 Capsicum annuum HOM05D005567 ORTHO05D005651 1.8e-30 136.0 78 87.2
MD05G1280500 Malus domestica HOM05D005567 ORTHO05D005651 1.8e-30 136.0 78 83.3
Sopen07g002020 Solanum pennellii HOM05D005567 ORTHO05D005651 2.3e-30 135.6 78 87.2
SGA_v2.0_scaffold1G00200 Striga asiatica HOM05D005567 ORTHO05D005651 2.3e-30 135.6 78 87.2
Oeu008947.1 Olea europaea HOM05D005567 ORTHO05D005651 3.0e-30 135.2 78 85.9
Aqoxy5G03882 Aquilegia oxysepala HOM05D005567 ORTHO05D005651 4.0e-30 134.8 85 80.0
MELO3C007111.2 Cucumis melo HOM05D005567 ORTHO05D005651 4.0e-30 134.8 85 78.8
Sed0009662 Sechium edule HOM05D005567 ORTHO05D005651 4.0e-30 134.8 85 80.0
SGA_v2.0_scaffold58G20438 Striga asiatica HOM05D005567 ORTHO05D005651 5.2e-30 134.4 81 82.7
CsaV3_6G051950 Cucumis sativus L. HOM05D005567 ORTHO05D005651 8.8e-30 133.7 85 78.8
MSTRG.16261 Avicennia marina HOM05D005567 ORTHO05D005651 1.2e-29 133.3 78 82.1
Peaxi162Scf00401g00029 Petunia axillaris HOM05D005567 ORTHO05D005651 1.2e-29 133.3 77 85.7
Lj2C923G5 Lonicera japonica HOM05D005567 ORTHO05D005651 1.5e-29 132.9 70 94.3
MBI18_g03007_MAGBIO Magnolia biondii HOM05D005567 ORTHO05D005651 1.5e-29 132.9 91 76.9
Nn3g20454 Nelumbo nucifera HOM05D005567 ORTHO05D005651 1.5e-29 132.9 91 78.0
ATR0661G527 Amborella trichopoda HOM05D005567 ORTHO05D005651 2.6e-29 132.1 97 72.2
HanXRQChr13g0422501 Helianthus annuus HOM05D005567 ORTHO05D005651 2.6e-29 132.1 78 84.6
Lj2C924T4 Lonicera japonica HOM05D005567 ORTHO05D005651 3.4e-29 131.7 70 92.9
Atru.chr10.1112 Acer truncatum HOM05D005567 ORTHO05D005651 4.4e-29 131.3 81 80.2
Lsat_1_v5_gn_3_121441 Lactuca sativa HOM05D005567 ORTHO05D005651 5.7e-29 131.0 81 81.5
BcaC09g50276 Brassica carinata HOM05D005567 ORTHO05D005651 7.5e-29 130.6 78 82.1
BcaC09g50282 Brassica carinata HOM05D005567 ORTHO05D005651 7.5e-29 130.6 78 82.1
BcaNung00240 Brassica carinata HOM05D005567 ORTHO05D005651 7.5e-29 130.6 78 82.1
A01p21660 Brassica napus HOM05D005567 ORTHO05D005651 7.5e-29 130.6 78 82.1
C01p27020 Brassica napus HOM05D005567 ORTHO05D005651 7.5e-29 130.6 78 82.1
BolC1t02650H Brassica oleracea HOM05D005567 ORTHO05D005651 7.5e-29 130.6 78 82.1
BraA01t02075Z Brassica rapa HOM05D005567 ORTHO05D005651 7.5e-29 130.6 78 82.1
ECA240G2278 Erigeron canadensis HOM05D005567 ORTHO05D005651 7.5e-29 130.6 94 72.3
AT4G15850 Arabidopsis thaliana HOM05D005567 ORTHO05D005651 9.8e-29 130.2 81 77.8
arahy.Tifrunner.gnm1.ann1.EWV0WN Arachis hypogaea HOM05D005567 ORTHO05D005651 9.8e-29 130.2 77 79.2
arahy.Tifrunner.gnm1.ann1.JRZ00F Arachis hypogaea HOM05D005567 ORTHO05D005651 9.8e-29 130.2 77 79.2
Lj4g0007029 Lotus japonicus HOM05D005567 ORTHO05D005651 9.8e-29 130.2 77 79.2
SHI38399 Sapria himalayana HOM05D005567 ORTHO05D005651 9.8e-29 130.2 78 79.5
THA.LOC104802575 Tarenaya hassleriana HOM05D005567 ORTHO05D005651 9.8e-29 130.2 82 78.0
AL7G39430 Arabidopsis lyrata HOM05D005567 ORTHO05D005651 1.3e-28 129.8 81 77.8
CARHR290380 Cardamine hirsuta HOM05D005567 ORTHO05D005651 1.3e-28 129.8 81 77.8
Sp7g14250 Schrenkiella parvula HOM05D005567 ORTHO05D005651 1.3e-28 129.8 81 80.2
EL10Ac8g19315 Beta vulgaris HOM05D005567 ORTHO05D005651 1.7e-28 129.4 78 79.5
Aa31LG10G6270 Aethionema arabicum HOM05D002639 ORTHO05D005651 2.2e-28 129.0 81 77.8
Lalb_Chr02g0156151 Lupinus albus HOM05D005567 ORTHO05D005651 2.2e-28 129.0 77 79.2
Lj2A322G63 Lonicera japonica HOM05D005567 ORTHO05D005651 3.7e-28 128.3 78 84.6
AUR62027404 Chenopodium quinoa HOM05D005567 ORTHO05D005651 4.8e-28 127.9 78 79.5
Carub.0007s2580 Capsella rubella HOM05D005567 ORTHO05D005651 6.3e-28 127.5 81 76.5
Sc05g0006010 Simmondsia chinensis HOM05D005567 ORTHO05D005651 1.1e-27 126.7 78 79.5
AUR62031319 Chenopodium quinoa HOM05D005567 ORTHO05D005651 1.4e-27 126.3 78 79.5
DCAR_003891 Daucus carota HOM05D005567 ORTHO05D005651 1.4e-27 126.3 84 79.8
QL05p055424 Quercus lobata HOM05D005567 ORTHO05D005651 1.4e-27 126.3 85 72.9
Ah.14g086310 Amaranthus hybridus HOM05D005567 ORTHO05D005651 1.8e-27 125.9 78 78.2
Hund12175 Selenicereus undatus HOM05D005567 ORTHO05D005651 1.8e-27 125.9 92 69.6
SEGI_23194 Sequoiadendron giganteum HOM05D005567 ORTHO05D005651 2.4e-27 125.6 85 76.5
Thhalv10024904m.g Eutrema salsugineum HOM05D005567 ORTHO05D005651 3.1e-27 125.2 78 79.5
Medtr5g077690 Medicago truncatula HOM05D005567 ORTHO05D005651 3.1e-27 125.2 84 71.4
TPR.G21614 Trifolium pratense HOM05D002142 ORTHO05D005651 3.1e-27 125.2 84 71.4
TPR.G9554 Trifolium pratense HOM05D005567 ORTHO05D005651 3.1e-27 125.2 84 71.4
Ca_18163_v3 Cicer arietinum L. HOM05D005567 ORTHO05D005651 4.1e-27 124.8 84 69.0
Os02g0795900 Oryza sativa ssp. japonica HOM05D005567 ORTHO05D005651 4.1e-27 124.8 78 79.5
Psat7g080400 Pisum sativum HOM05D005567 ORTHO05D005651 4.1e-27 124.8 84 71.4
FAN25G0576 Fragaria x ananassa HOM05D005567 ORTHO05D005651 5.4e-27 124.4 78 78.2
FAN16G1390 Fragaria x ananassa HOM05D005567 ORTHO05D005651 9.1e-27 123.6 78 76.9
Zm00001eb257820 Zea mays HOM05D005567 ORTHO05D005651 9.1e-27 123.6 78 79.5
FAN11G3281 Fragaria x ananassa HOM05D005567 ORTHO05D005651 1.2e-26 123.2 80 76.2
RcHm_v2.0_Chr5g0014641 Rosa chinensis HOM05D005567 ORTHO05D005651 1.2e-26 123.2 78 76.9
FvH4_3g05121 Fragaria vesca HOM05D005567 ORTHO05D005651 1.6e-26 122.9 78 76.9
FAN21G1630 Fragaria x ananassa HOM05D005567 ORTHO05D005651 2.0e-26 122.5 78 78.2
VMungo0251G3629 Vigna mungo HOM05D005567 ORTHO05D005651 2.7e-26 122.1 82 76.8
HPP92_028168 Vanilla planifolia HOM05D005567 ORTHO05D005651 3.5e-26 121.7 84 72.6
Migut.M00885 Erythranthe guttata HOM05D005567 ORTHO05D005651 1.7e-25 119.4 82 75.6
Glyma.14G115100 Glycine max HOM05D005326 ORTHO05D006734 7.2e-24 114.0 79 74.7
AagrBONN_evm.TU.Sc2ySwM_344.3570 Anthoceros agrestis HOM05D005567 ORTHO05D005651 9.5e-24 113.6 84 69.0
Mapoly0149s0031 Marchantia polymorpha HOM05D017422 ORTHO05D005651 9.5e-24 113.6 80 70.0
Pp3c6_13920 Physcomitrium patens HOM05D005567 ORTHO05D005651 1.2e-23 113.2 84 69.0
PSO384G1189 Papaver somniferum HOM05D005567 ORTHO05D005651 1.6e-23 112.8 99 63.6
PSO675G8008 Papaver somniferum HOM05D005567 ORTHO05D005651 1.6e-23 112.8 110 60.0
Glyma.08G231300 Glycine max HOM05D005567 ORTHO05D005651 2.1e-23 112.5 79 74.7
PSO339G4780 Papaver somniferum HOM05D005567 ORTHO05D005651 2.1e-23 112.5 99 63.6
PSO541G2802 Papaver somniferum HOM05D005567 ORTHO05D005651 2.1e-23 112.5 100 64.0
FAN16G0453 Fragaria x ananassa HOM05D005567 ORTHO05D005651 4.7e-23 111.3 70 78.6
Oeu054930.1 Olea europaea HOM05D005567 ORTHO05D005651 1.4e-22 109.8 75 76.0
Cfa004323 Carpinus fangiana HOM05D013114 ORTHO05D005651 2.3e-22 109.0 57 93.0
Mapoly3797s0001 Marchantia polymorpha HOM05D005567 ORTHO05D005651 4.0e-22 108.2 68 75.0
Phvul.002G179500 Phaseolus vulgaris HOM05D005567 ORTHO05D005651 1.2e-21 106.7 82 68.3
SMO139G0134 Selaginella moellendorffii HOM05D005567 ORTHO05D005651 9.8e-21 103.6 74 68.9
PGR031G2076 Punica granatum HOM05D005567 ORTHO05D005651 3.7e-20 101.7 56 85.7
CBR_g39259 Chara braunii HOM05D000019 ORTHO05D000002 2.4e-19 99.0 77 67.5
RcHm_v2.0_Chr5g0014671 Rosa chinensis HOM05D005567 ORTHO05D005651 2.9e-17 92.0 55 76.4
Cre07.g319750 Chlamydomonas reinhardtii HOM05D005567 ORTHO05D005651 3.6e-15 85.1 85 54.1
Cpa.g.sc17.43 Carica papaya HOM05D005567 ORTHO05D005651 1.3e-12 76.6 85 55.3
MCO01G746 Micromonas commoda HOM05D000032 ORTHO05D005651 1.3e-12 76.6 96 47.9
vmacro03355 Vaccinium macrocarpon HOM05D005567 ORTHO05D005651 2.2e-12 75.9 39 89.7
CAN.G2122.3 Capsicum annuum HOM05D005567 ORTHO05D005651 4.6e-10 68.2 48 77.1
PRCOL_00000824 Prasinoderma coloniale HOM05D000032 ORTHO05D005651 2.3e-09 65.9 72 48.6
vmacro01647 Vaccinium macrocarpon HOM05D000032 ORTHO05D004701 1.2e-07 60.1 86 46.5
PGR031G0768 Punica granatum HOM05D000032 ORTHO05D004701 2.1e-07 59.3 96 43.8
Actinidia17725 Actinidia chinensis HOM05D000032 ORTHO05D004701 8.0e-07 57.4 100 41.0
Cfa022888 Carpinus fangiana HOM05D000032 ORTHO05D005651 8.0e-07 57.4 73 45.2
Ciclev10027858m.g Citrus clementina HOM05D000032 ORTHO05D004701 1.1e-06 57.0 85 42.4
Lj5A313T75 Lonicera japonica HOM05D000032 ORTHO05D004701 1.1e-06 57.0 89 41.6
Rhsim11G0111300 Rhododendron simsii HOM05D000032 ORTHO05D004701 1.1e-06 57.0 86 45.3
CSS0029675 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D004701 1.4e-06 56.6 88 43.2
CSS0042177 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D004701 1.4e-06 56.6 88 43.2
Zm00001eb211400 Zea mays HOM05D000032 ORTHO05D004701 1.4e-06 56.6 92 41.3
CSS0005571 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D004701 2.3e-06 55.8 95 42.1
CSS0049197 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D004701 2.3e-06 55.8 95 42.1
Cre17.g727700 Chlamydomonas reinhardtii HOM05D000032 ORTHO05D004701 2.3e-06 55.8 98 40.8
Dinv24534 Davidia involucrata HOM05D000032 ORTHO05D004701 2.3e-06 55.8 89 42.7
Haze_22652 Corylus avellana HOM05D000032 ORTHO05D006669 3.1e-06 55.5 104 37.5
HanXRQChr16g0513351 Helianthus annuus HOM05D000032 ORTHO05D004701 3.1e-06 55.5 98 39.8
Lj9A239T57 Lonicera japonica HOM05D000032 ORTHO05D004701 3.1e-06 55.5 95 41.1
GSVIVG01031360001 Vitis vinifera HOM05D000032 ORTHO05D004701 3.1e-06 55.5 95 41.1
Actinidia22841 Actinidia chinensis HOM05D000032 ORTHO05D004701 4.0e-06 55.1 81 43.2
Eucgr.A00214 Eucalyptus grandis HOM05D000032 ORTHO05D006669 4.0e-06 55.1 106 39.6
Phvul.001G220500 Phaseolus vulgaris HOM05D000032 ORTHO05D004701 4.0e-06 55.1 110 37.3
Sabra13G0000200 Salix brachista HOM05D000032 ORTHO05D004701 4.0e-06 55.1 95 40.0
Solyc08g042050.3 Solanum lycopersicum HOM05D000032 ORTHO05D004701 4.0e-06 55.1 94 40.4
Sopen08g012480 Solanum pennellii HOM05D000032 ORTHO05D004701 4.0e-06 55.1 94 40.4
Atru.chr12.1497 Acer truncatum HOM05D000032 ORTHO05D004701 5.2e-06 54.7 85 42.4
AL6G38380 Arabidopsis lyrata HOM05D000032 ORTHO05D004701 5.2e-06 54.7 104 37.5
AT5G26742 Arabidopsis thaliana HOM05D000032 ORTHO05D004701 5.2e-06 54.7 104 37.5
CANSAT54G1128 Cannabis sativa HOM05D000032 ORTHO05D004701 5.2e-06 54.7 99 39.4
Carub.0006s2418 Capsella rubella HOM05D000032 ORTHO05D004701 6.8e-06 54.3 104 37.5
ClCG03G017990 Citrullus lanatus HOM05D000032 ORTHO05D004701 6.8e-06 54.3 97 41.2
Glyma.03G226600 Glycine max HOM05D000032 ORTHO05D004701 6.8e-06 54.3 108 37.0
Manes.18G012300 Manihot esculenta HOM05D000032 ORTHO05D006669 6.8e-06 54.3 96 39.6
Sabra05G0186800 Salix brachista HOM05D000032 ORTHO05D006669 8.9e-06 53.9 96 40.6
THA.LOC104822292 Tarenaya hassleriana HOM05D000032 ORTHO05D004701 8.9e-06 53.9 95 38.9
GSVIVG01009935001 Vitis vinifera HOM05D000032 ORTHO05D006669 8.9e-06 53.9 96 39.6


User provided reference genes

Program Settings